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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
--------->
ARR14(2)
<-----------
GT1
<---------
AHL20(2)
--------->
AHL20(2)
<---------
AHL20(1)
----------->
GT1
<---------
AHL20(2)
<---------
ARR11(3)
--------->
AHL20(1)
<---------
YAB1
<---------
AHL20(1)
<-------
TEIL
<----------
DOF2
----->
GT1
--------->
AHL20(2)
--------->
CCA1(2)
<---------
CCA1(2)
--------->
ARR11(3)
---
TOE2(3)
<---------
AHL20(2)
<---------
ARR14(2)
--------->
DAG2
<---------
ARR11(3)
---
TOE1(3)
--------->
AHL20(2)
--------->
At4g35610
---------->
DOF2
--------->
YAB1
ttttttataagtgctaaaatttttaatttttttaaactaatcagatacaatatccaaaatactaaaaagtgtctctatctttttctattcaaaatattga
78600
--------->
AHL20(2)
----------->
GT1
<---------
ATHB12
--------->
TOE1(3)
<---------
AHL20(1)
<---------
ATHB12
<----------
DOF2
--------->
AHL20(2)
--------->
WOX13(1)
<---------
ICU4
<---------
AHL20(2)
--------->
AHL20(1)
----------->
RAV1(1)
--------->
ICU4
<---------
ARR11(3)
<---------
ARR11(3)
--------->
ANAC46
--------->
MYB52(1)
--------->
ARR11(3)
<----------
DOF2
<-----------
GT1
--------->
ANAC46
--------->
AHL20(2)
--------->
TOE2(3)
gttgtctttgacaatattttaaactagttgtaaatcacagagataaacaccacataaatcaataaataactgtaatctttaccttgaagattttattcat
78700
<-
<--
---------->
DOF2
<----
--------->
ANAC58
------
<---------
ANAC58
----------->
GT1
-------
--------->
HSFB2a(2)
--------->
ANAC58
-------
<---------
HSFB2a(2)
<-------
TEIL
--------->
ANAC58
<------
<---------
ARR11(3)
<---------
ANAC58
--------->
ANAC58
<------
--------->
AHL20(1)
--------->
MYB52(2)
--------->
MYB52(1)
<------
ZmHOX2a(2)
--------->
ARR11(3)
<---------
MYB52(1)
<---------
AHL20(2)
--------->
DAG2
<---------
ARR14(2)
--------->
CCA1(1)
--------->
DOF5.7(2)
--------->
AHL20(2)
---------->
DOF2
--------->
ARR14(2)
--------->
RVE1(1)
--------->
TOE2(3)
<---------
AHL20(2)
--------->
ANAC46
--------->
DAG2
------>
ZmHOX2a(2)
atgaaatatcttatagaaaatacttcgttagcttgaaaatgcatatttagtttaaatacaaataaacgaaacaaaaagcaaaaagcatagacggatccgt
78800
---------->
DOF2
----------
ARR10
---------->
DOF2
-------
CCA1(2)
--------->
ANAC58
-----
MYB52(1)
--------->
ANAC58
--------->
AHL20(2)
--->
LBD16
--------->
ANAC58
--------->
ANAC58
<--
---->
GT1
--------->
ANAC58
--------->
LBD16
<-----
-->
ANAC55(2)
--------->
AtLEC2
<----------
DOF2
--------->
ANAC58
<------
---
ANAC55(2)
--------->
ANAC58
<-------
TEIL
------>
MYB83
<---------
LBD16
----------->
GT1
---
ANAC46
--------->
ANAC58
--------->
CCA1(2)
------>
MYB46(1)
--------->
ANAC46
--------->
AHL20(2)
aaatctactcttaagaagccatgcaagaaagattcaaagtcatcacaaaaaccaagcttttgtaatttgcgcaagtaattaacaaaaaaaaatgtaacaa
78900
--------->
ARR14(2)
<---------
ARR14(2)
<------
ZmHOX2a(1)
<xxxxxxxxxxxxxxxx
smallRNA(s)
----------->
RAV1(2)
<xxxxxxxxxxxxxxxx
smallRNA(s)
<xxxxxxxxxxxxxxxx
smallRNA(i)
<xxxxxxxxxxxxxxxx
smallRNA(s)
<xxxxxxxxxxxxxxxx
smallRNA(i)
xxxxxxxxxxxxxxxx>
smallRNA(i)
<xxxxxxxxxxxxxxxx
smallRNA(s)
<xxxxxxxxxxxxxxxx
smallRNA(i)
<xxxxxxxxxxxxxxxx
smallRNA(s)
<xxxxxxxxxxxxxxxxxx
smallRNA(se3)
<xxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<xxxxxxxxxxxxxxxx
smallRNA(s)
<xxxxxxxxxxxxxxxxx
smallRNA(fl3)
<xxxxxxxxxxxxxxxx
smallRNA(s)
<xxxxxxxxxxxxxxxxxx
smallRNA(fl3)
<xxxxxxxxxxxxxxxxxxx
smallRNA(se3)
<xxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
<xxxxxxxxxxxxxxxxxxx
smallRNA(le3)
<xxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<xxxxxxxxxxxxxxxxxxx
smallRNA(i2)
<xxxxxxxxxxxxxxxxxx
smallRNA(fl3)
<XXXXXXXXXXXXXXXXXXXX
MIR165A/B
<XXXXXXXXXXXXXXXXXXXX
MIR166A-G
<xxxxxxxxxxxxxxxxxxxx
smallRNA(i2)
<xxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
<xxxxxxxxxxxxxxxxxxxx
smallRNA(l2)
<xxxxxxxxxxxxxxxxxxxx
smallRNA(s2)
<xxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
<xxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
<xxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
<xxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<xxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<xxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
<xxxxxxxxxxxxxxxxxxx
smallRNA(se3)
<xxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
<xxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
<xxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
------->
MYC3
<xxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
--------->
YAB1
<---------
ANAC46
<---------------------
WRI1
<--------
HAHB4
<---------
MYB46(3)
--------->
LBD16
-------->
ATHB1
--------->
ANAC58
<xxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
--------->
ATHB12
--------->
ANAC58
<---------
ANAC46
<---------
TOE2(1)
<---------
ICU4
<-----
--------->
At4g35610
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
<---------
ATHB12
------->
TEIL
-------
AHL20(2)
<---------
LBD16
<---------
TOE1(1)
<---------
ANAC55(2)
<-------
MYC3
----------
AGL15
=============================
RAV
--------->
YAB1
<-------
TEIL
------
-----------
AGL3
<-----------
RAV1(1)
<-----------
HVH21
<---------
YAB1
--------->
TOE2(3)
<------
taaatggtgatcagaggcaataacatgttgg
gggggatgaagcctggtccgaggatactctctatgatcacttgaatcattaacatacacatgtatatat
79000
XXXXXXXXXXXXXXXXXXXX>
MIR166A-G
<------
ZmHOX2a(2)
<---------
ARR14(2)
<xxxxxxxxxxxxxxxxxxxx
smallRNA(i2)
<xxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
<xxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
<xxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<xxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
<xxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
<xxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
<xxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
<xxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
<xxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
<xxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
------>
ZmHOX2a(1)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
--------->
ARR11(3)
<-------
TEIL
<---------
ARR11(3)
<---------
ARR14(2)
--------->
ARR14(2)
------->
GAMYB
------>
ZmHOX2a(2)
<---------
ARR14(2)
--------->
At4g35610
<---------
YAB1
--------->
ARR14(2)
--------->
YAB1
--------->
ANAC46
--------->
YAB1
<---------
GLK1(2)
----
ARR11(3)
--------->
ANAC46
*
TSS
------->
GAMYB
--------->
ARR11(3)
<---
--->
ARR11(3)
<xxxxxxxxxxxxxxxx
smallRNA(s)
--------->
TOE1(3)
<---------
ARR11(3)
<-----------
RAV1(1)
---
CCA1(2)
--------->
ARR14(2)
<---------
At4g35610
<---------
YAB1
<---------
At4g35610
<---------
REM1(1)
ctataatatcctcgatccagacaacattcccc
tcaactgaaatagcttaaccctcatgataatcgatcttagcagattcacaaatttttgttgtagagag
79100
--------->
ICU4
<---------
ARR14(2)
xxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
--------->
ARR14(2)
--------->
YAB1
--------->
ATERF1(1)
<------
MYB83
<---------
YAB1
<------
NtERF2
<------
MYB46(1)
--------->
LBD16
<---------
MYB46(3)
<---------
ANAC58
--------->
MYB46(2)
<---------
ANAC46
--------->
MYB55(2)
<---------
ANAC58
--------->
MYB111(2)
--------->
ALFIN1
<---------
MYB46(3)
--------->
ATHB12
---
--------->
MYB111(1)
--------->
YAB1
---
<---------
AtMYB61
--------->
YAB1
--------->
ALFIN1
------
<---------
MYB55(1)
--------->
ICU4
--------->
ATHB12
---------
<--------
P
xxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
<---------
LBD16
--------->
YAB1
<------
ZmHOX2a(1)
<---------
DEAR3(1)
<---------
YAB1
<---------
YAB1
--------->
AHL20(2)
------
ZAT6
<---------
MYB46(3)
<---------
ZAT6
--------->
ICU4
<----------
DOF2
tgatagaggagagagagagagaggttggtgaatggtgatgatggtgttatgatgagggaatgatgagtggcggagacgaagatgggcttttaataagaca
79200
--------->
YAB1
--------->
AHL20(2)
<---------
AHL20(1)
<---------
AHL20(2)
--------->
AHL20(1)
--------->
YAB1
<---------
YAB1
<---------
AHL20(2)
--------->
AHL20(2)
<---------
AHL20(2)
<---------
AHL20(1)
<---------
AHL20(2)
--------->
ARR11(3)
<---------
ARR11(3)
<---------
ANAC46
<---------
AHL20(2)
<---------
ARR14(2)
<---------
AHL20(1)
--------->
ARR14(2)
--------->
AHL20(1)
----------->
TGA1
------->
GAMYB
--------->
AHL20(2)
--------->
WOX13(1)
-------->
RAV1(1)
<---------
DAG2
--------->
AHL20(2)
----------->
HVH21
-
------>
MYB52(1)
<----------
DOF2
<---------
AHL20(2)
<---------
ATHB12
---
--->
ANAC46
------>
ZmHOX2a(1)
--------->
AHL20(2)
<---------
YAB1
<---------
At5g28300
<--
>
ANAC46
--------->
TOE2(3)
--------->
AHL20(2)
<---------
YAB1
--------->
At5g28300
---
caacagaaacaggtcgtcattcctaaaccctagctttttcaaaaatatattttatttattataatatcaatgacgcagttactgcttatattttcgaatg
79300
<---------
TOE1(2)
<---------
TOE2(2)
<-----------
TGA1
<-----------
HVH21
--------->
ANAC58
--------->
ANAC46
<---------
O2
--------->
TGA1a
<---------
ARR14(2)
--------->
O2
--------->
ARR11(3)
<---------
TGA1a
--------->
ARR14(2)
--------->
bZIP60(2)
--------->
ANAC58
<--
--------->
ANAC55(2)
--------->
GLK1(2)
-----
--------->
ANAC58
<---------
YAB1
<---------
ARR14(2)
<---------
ARR11(3)
<---------
ANAC55(2)
<---------
ICU4
------->
TEIL
<---------
ARR11(3)
<-
--------->
ANAC55(1)
--------->
AHL20(1)
--------->
ANAC46
--------->
ARR14(3)
<-----------
STF1
<---------
AHL20(2)
<---------
MYB52(2)
--------->
ANAC58
<------
<---------
ALFIN1
--------->
AHL20(2)
--------->
ATHB12
--------->
ANAC58
--------->
ARR11(3)
---------->
HVH21
--------->
ANAC58
--------->
YAB1
--------->
ANAC58
<---------
ARR14(3)
------>
At4g35610
----------->
GT1
--------->
ICU4
--------->
LBD16
--------->
GLK1(2)
---
-------
bZIP60(2)
--------->
ANAC58
<---------
YAB1
<-----------
GT1
----------->
GT1
--------->
ARR14(2)
-------->
GT1
<-----------
GT1
--------->
AHL20(2)
----------->
GT1
--------->
ARR14(2)
--------->
GLK1(2)
aggtgacacgtcatacgtttaacttggcaagaaaaaaattgattttgattatgatttgtaactaatccacgaatcggtaagaaaatctacaaaatcttca
79400
<----------
DOF2
--------->
YAB1
--------->
ANAC58
--------->
GLK1(2)
<---------
AtMYB61
--------->
ANAC58
-------
AHL20(2)
--------->
ANAC46
--------->
ANAC46
---->
TOE2(3)
<---------
AHL20(1)
<-----------
HVH21
--------
AHL20(2)
--------->
AHL20(2)
--------->
TOE2(3)
---
YAB1
<---------
GLK1(2)
<---------
AHL20(2)
--------->
TOE1(3)
------>
ZmHOX2a(2)
------>
AHL20(2)
<-----------
GT1
<---------
At4g35610
<---------
YAB1
<---------
CCA1(2)
--
ttaatttgaaacagcttctggtctaattttctattttatttcagcaacttgtggtctaattagactatgaaaccttcacgcataactttctggtgatcca
79500
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AGI:
At1g01183.1
Description:
MIR165/MIR165A; miRNA
Range:
from: 78932
to: 79032
Orientation: Reverse
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.
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