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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                                                  <---------MYB59
                                                                 --------->ANAC46
                                                               <-----------GT1
                                                             <----------DOF2
                                                            ------>ZmHOX2a(2)
                                                           <------ZmHOX2a(2)
                                                           <---------RVE1(1)
                                                          <---------ARR14(2)
<----------DOF2                                           --------->ARR14(2)
--------At4g35610                                         --------->ARR11(3)
------->At4g35610                                         <---------ARR11(3)
------->ZAT2                                              --------->ARR14(3)                    ----
---->ZAT2                                                 <---------ARR14(3)                 <------
-----ZAT2                          ------->GAMYB         --------->RVE1(1)                  <-------TEIL
---->At4g35610                     ----------->RAV1(1)---------->DOF2                      ---------
-----At4g35610           <---------At4g35610       --------->ANAC58                       <---------ARR14(2)
--->ANAC46   <------NtERF2        --------->ANAC46 --------->ANAC58                       --------->ARR14(2)
 
cagctttcaccaaggtcgcgattttgtcagcctatcaacgacataaacaaacacaagtaaagatctttacccaattcaaaacacatttagacagatacat  50700
                                               --------->ANAC58
                                               --------->ANAC58
                                               --------->ANAC46
                                             <-----------GT1
                                             --------->ZAT6
                                     --------->ARR14(2)          --------->ZAT6
                          --------->ZAT6--------->TOE1(3)        <-----------GT1
                          <-----------GT1------>ZmHOX2a(1) <--------HAHB4
                        --------->YAB1  --------->TOE2(3)  <---------ICU4
                     ------>MYB83    <---------ARR14(2)    --------->YAB1
----->AHL20(2)       ------>MYB46(1)------>MYB46(1)      --------->GLK1(2)                     -----
---ANAC55(2)       <---------MYB59  ------>MYB83        --------->YAB1                        ------
>CCA1(2)       ------>ZmHOX2a(1)  <---------MYB59    --------->YAB1                       ----------
 
aaaatacttgttcaattcctgaccaaataatactataccaaatccttatcactccataagaatcattttcactaagtttctaactatcaagtcaaaagaa  50800
                                                                               --------->LBD16
                                                                              <---------ANAC46
                                    --------->YAB1                            <---------ANAC58
                                   <---------ATHB12                   ---------->DOF2
   --------->HSFB2a(2)            ------>MYB46(1)                ---------->DOF2
   <---------HSFB2a(2)           --------->WOX13(1)    --------->ANAC58     <---------At5g28300
<---------ARR14(2)      ---------->DOF2  --------->CCA1(2)      <---------WRKY12
---->MYB52(1)        --------->ANAC58   --------->ARR11(3)      <---------WRKY38(1)
--->ARR11(1)         --------->ANAC58   <---------ARR11(3)  <------ZmHOX2a(1) <---------ANAC58
>DOF2              ---------->DOF2------>MYB83         --------->ANAC58   --------->ARR11(3)
 
acggttccaaaaccctactgactaaagcaaagagaccaatcaagatttagaaatagacaagcaggagtcaaaggaaagataccgtgatagcgataccctc  50900
                    --------->At4g35610
                    <---------At4g35610
                    <---------ZAT2
                    --------->ZAT2       ------->GAMYB
           --------->MYB52(1)           <------------AtMYB77
        --------->YAB1          <---------ARR11(3)                                              <---
       <------ZmHOX2a(2)      --------->ANAC58     <---------AHL20(2)                           <---
      <---------ARR11(3)      --------->ANAC58     --------->AHL20(2)                           <---
      --------->ARR11(3)  --------->ANAC46   <---------DDF1                                ---------
     <------ZmHOX2a(1)    --------->ANAC58  --------->ETT(2)                              --------->AHL20(2)
==============HOX2a_HOX2a --------->ANAC58  <---------ETT(2)--------->LBD16               <---------AHL20(2)
------>ZmHOX2a(1)  <---------ARR14(2)   <<<<<<<<<TAC1       ------>ZmHOX2a(1) --------->At5g28300
<---------HSFB2a(2)--------->ARR14(2)>>>>>>>>>>AtWER      ----------->RAV1(2)----------->GT1 <------
 
gtcctcgaggatcataacagcgtagctgcaagcaagctctccaactgtcgacatttttttatcctgaaacgattcaaaaacagtaacaatagattaattg  51000
                                                                    --------->YAB1
                                                                    xxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)
                                                            <-----------RAV1(2)
------ANAC58       --------->AHL20(2)                    -------->P--------->ICU4           --------
------ANAC46     --------->TOE2(3)                       --------->ANAC58               --------->YAB1
------ANAC58     --------->TOE1(3)                       --------->ANAC58             ----------->GT1
>ATHB12  <----------ID1                                --------->MYB46(3)         --------->YAB1
---WOX13(1)      <----------DOF2            <---------ZAT6 ------->GAMYB         <---------ATHB12 <-
 
cttattcacaaaaaaacaaactttaaatccgttttaaaccaaaattagagtaagtcgaacaacccagacgatgatgaaatgccaataacaagtataaacg  51100
                                                        <------NtERF2
                                                        --------->ATERF1(1)
                                                       <---------ORA47(2)
                                                       <---------ATERF1(1)
                                                       <---------DEAR4(2)                          -
                                                       <---------RAP2.3(1)                         <
                                                       <---------ERF1                              -
                                                       ------>NtERF2                          ======
                                                      <---------RAP2.3(3)                     <-----
                                 <------ZmHOX2a(2)    <---------RAP2.3(2)                     <-----
                     <---------MYB59       <---------DAG2<---------ANAC46                  ---------
         --------->GLK1(2)      --------->ARR11(3)    <---------RAP2.6(2)                  ---------
       *TSS          --------->TOE2(2)     <----------DOF2                                 <--------
    ----------->GT1  --------->TOE1(2)    <---------ANAC58                               --------->LBD16
->MYB52(1) --------->YAB1       <---------ARR11(3)    <---------DEAR3(1)                <---------ANAC46
-----ZmHOX2a(2)      --------->TOE2(3)    <---------ANAC58     <----------ID1          <---------LBD16
 
gatcaaatggagaatcatagactacctaagagtaagatcgaaaatgcttttcgcaaggcggcgagagagacaaaatttctagggtttggatgcggagacg  51200
                                          <------NtERF2
                             --------->ATHB12
                             <---------ICU4
                             -------->ATHB1
  <-------TEIL               <--------HAHB4
-------->GLK1(1)             --------->ATHB51
---------At4g35610           <---------AHL20(2)
-------->At4g35610           --------->AHL20(2)
========================bZIP_DOF         --------->RAP2.3(2)
----O2                      <---------ATHB12      <---------ARR14(2)
----TGA1a                   --------->ICU4--------->LBD16                        <---------AHL20(2)
-->HVH21              <-----------GT1    --------->RAP2.6(2)               <-----------GT1
>ARR14(2)         <----------DOF2        ----------->RAV1(1)         --------->AHL20(2)
-ARR14(2)    ---------->DOF2<---------ATHB51      --------->ARR14(2) <---------AHL20(2)
 
ggagatgcagagtttataaagcttttatccaattatttgatgggccgcataaatattcgctaggcccattttttaattttacatatatttgttttcagta  51300
                                                                                  --------->MYB52(2)
                                                                                  <------MYB83
                                                                                  <------MYB46(1)
                                                                                 <---------AtMYB61
                                                                                <--------P
                                                                               <---------ANAC58
                                                                              <------MYB83
                                                                              --------->MYB55(2)
                                                                              <---------MYB46(3)
                                                                              --------->MYB52(2)
                                                                              --------->ATHB12     <
                   --------->LBD16                                            <------MYB46(1)      -
                   --------->At5g28300                          <---------WRKY18(1)      <---------LBD16
             ---------->DOF2                                   --------->WRKY12<-------GAMYB      --
            ------>MYB83--------->AHL20(2)                     --------->WRKY45<---------ANAC58-----
            ------>MYB46(1)        --------->CCA1(2)           --------->WRKY38(1)<---------MYB46(3)
          --------->TOE2(3)   ---------->DOF2                <----------DOF2 <---------AtMYB61<-----
          <---------MYB59    --------->AHL20(2)        --------->CCA1(2)  <-----------RAV1(1) ------
 
ttgggccttcaaacctaatagccgtgaataaataaaagataagagcccaaattaagagatttgactttgaccagaaattgttggttggtttctagggaac  51400
                                        --------->ANAC58
                                        --------->ANAC58
                                       --------->WOX13(1)
                                   <------MYB46(1)
                             ------->MYC2
                             ------->PIF5
                   <-----------HVH21<-----------HVH21
              <---------YAB1 <-------MYC3
       --------->PCF5  <---------bZIP60(1)
    --------->ALFIN1   --------->bZIP60(1)                   <---------DAG2
  --------->DEAR3(1)----------->HVH21--------->WRKY18(1)     ------>ZmHOX2a(1)
---------ALFIN1    <-------MYC3    <------MYB83         <---------GLK1(1)
-------->AtMYB61   ------->MYC3--------->ZAT2          ------->TEIL
------->MYB46(3) ------->TEIL<-------MYC2           <---------WOX13(1)
---->MYB46(3) --------->AtLEC2 <---------ZAT2  --------->ANAC55(2)                    --------->ATHB12
----KAN4(2)<---------ATHB12  ------->MYC3      <---------ANAC55(2)         >>>>>>>>>MYB98
--->SPL7 --------->WOX13(1)  <-------PIF5    --------->ICU4  <----------DOF2--------->YAB1----------
 
gaccaccgtggtccatcatgcatgtgacagcacgagcttggtcaagcaatacttgatggatgtccttttcgcactagtaacataattcttcatttgacat  51500
                                                  <---------ANAC46
                                                  <---------ANAC58
                                         <---------YAB1
                                        <-----------GT1
                                    <---------AHL20(2)
                                   --------->ARR11(3)
                                   --------->AHL20(1)
                                   <---------AHL20(2)
                                   <---------ARR11(3)                                 --------->ATHB12
                                   --------->AHL20(2)                                <---------YAB1
                    --------->YAB1 <---------AHL20(1)      <-------TEIL   --------->YAB1
->HVH21     --------->YAB1   <------ZmHOX2a(2)    <---------ANAC58       ---------->DOF2       <----
 
atttatagtcttcaataaacatatcatatgcgatccaatatattttcattttttcttgtacattcgtcttggtccaaaaatcacgagtttgattagttct  51600
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AGI:  At1g01100.1   
Description:  60S acidic ribosomal protein P1 (RPP1A). Identical to 60S acidic ribosomal protein P1-1 (RPP1A) [Arabidopsis Thaliana] (GB:Q8LCW9;GB:Q9MAM5); similar to 60S acidic ribosomal protein P1 (RPP1C) [Arabidopsis thaliana] (TAIR:AT5G47700.2); similar to 60S acidic ribosomal protein P1 (RPP1C) [Arabidopsis thaliana] (TAIR:AT5G47700.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ62657.1); contains InterPro domain Ribosomal protein 60S; (InterPro:IPR001813)
Range:  from: 50090    to: 51108    Orientation: Reverse
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

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