Home
Tools
- Search
- Colocalization
- Gene Analysis
- Gene Identification
- Small RNA Targets
- MicroRNA Targets
Description
Documentation
Citations
Downloads
Publications
History
Contact
Links
Disclaimer
For complete usage of AthaMap please enable JavaScript in the settings of your browser!
Search
Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
Go to graphical and table display
1 10 20 30 40 50 60 70 80 90 100
<---------
ARR14(2)
--------->
ARR11(3)
<---------
ARR11(3)
--------->
YAB1
---->
TEIL
<---------
ARR11(1)
----->
P
--------->
ARR14(2)
->
ZmHOX2a(2)
--->
CCA1(2)
-
ZmHOX2a(2)
-->
ARR14(2)
---
ARR11(3)
<----------
ID1
-----
ARR10
<----------
DOF2
<---------
ICU4
-->
ARR11(3)
------>
ZmHOX2a(1)
<---------
ATHB12
-->
AGP1
<---------
CCA1(2)
------>
ZmHOX2a(1)
<---------
ANAC55(2)
---
ARR14(2)
<---------
ATHB12
--------->
AHL20(2)
----------
tacctagtatcatatcttcatacaactccaatccttcctctttggttatcaa
ctatttcaaattacttaaatcaatacaacaaatctcacaacttgtaaa
48900
<------
MYB46(1)
----------->
GT1
<-----------
RAV1(2)
--------->
SPL7
-
--------->
ZAT18
<---------
ANAC58
<
<---------
SPL7
--------->
ATHB51
<--
<-----------------------
TaNAC69(2)
<---------
WOX13(1)
<-----
---------->
DOF2
<------
ZmHOX2a(1)
<------
MYB83
<---------
ANAC58
<------
<---------------
AGL15
<---------
ANAC58
--------->
ATHB12
==========================
<---------
HSFB2a(2)
--------------->
AtSPL3
<---------
ANAC58
--------->
LBD16
-------
--------------->
AGL15
<------
ZmHOX2a(1)
<---------
YAB1
<---------
ANAC58
------>
ZmHOX2a(1)
--------
->
GT1
<------
ZmHOX2a(1)
<---------
ANAC58
-------->
ATHB1
----------->
HVH21
----------->
HVH21
attccaaaagaaggagacgaggagaggaagcgtac
caggctggtattattggtggattgcttctccttgacaacttcctggacagagacgacgggagatc
49000
---------->
DOF2
==================================
HOX2a_HOX2a
<------
ZmHOX2a(1)
<---------
LBD16
=================================
HOX2a_HOX2a
<---------
LBD16
------>
ZmHOX2a(2)
<-------
GAMYB
--------->
LBD16
<------
ZmHOX2a(2)
<---------
ANAC46
<---------
TOE2(1)
--------->
ARR14(2)
<---------
ANAC58
<---------
TOE1(1)
<---------
ARR14(2)
<---------
ANAC58
=======================
HOX2a_HOX2a
<------
NtERF2
------>
ZmHOX2a(2)
--------->
ATERF1(1)
<---------
DEAR3(1)
==========================
HOX2a_HOX2a
--------->
ALFIN1
=============
HOX2a_HOX2a
--------->
MYB52(1)
--------->
ALFIN1
===========================
HOX2a_HOX2a
<---
-------->
MYB55(2)
========================
HOX2a_HOX2a
----
---------
MYB46(3)
<------
ZmHOX2a(2)
<------
ZmHOX2a(1)
<---
-------
LBD16
<---------
ARR14(2)
===================
HOX2a_HOX2a
-
ZmHOX2a(2)
--------->
ARR14(2)
====================
HOX2a_HOX2a
---
ARR14(2)
<---------
MYB46(3)
--------->
ALFIN1
------
=
HOX2a_HOX2a
----------->
ARR10
<------
ZmHOX2a(1)
--------
-->
ARR14(2)
<---------
WOX13(1)
--------->
ALFIN1
======================
HOX2a_HOX2a
->
GLK1(1)
--------->
ATHB12
--------->
MYB52(1)
=======================
HOX2a_HOX2a
gacgggtggcgttggagtgattgagtctgcgaagggagagggaacgggtggatccgaggaaagaagaaggaggagccaatcggatcgggagcaagagacg
49100
<---------
YAB1
=================
HOX2a_HOX2a
--------------->
AGL15
------>
ZmHOX2a(2)
<---------------
AGL15
<------
ZmHOX2a(2)
<------
NtERF2
<---
==================
HOX2a_HOX2a
--------->
DEAR3(1)
----
--------->
ARR14(2)
<---------
ETT(2)
----
<---------
ARR14(2)
<---------
ZAT2
<------
NtERF2
<---
<---------
YAB1
<---------
At4g35610
--------->
ATERF1(1)
-------
------
ARR14(2)
--------->
ARR14(2)
<---------
ATERF1(1)
--------->
YAB1
----->
ARR14(2)
<---------
ARR14(2)
--------->
At4g35610
<-----------------
AGL3
<---------
------
GLK1(2)
<------
ZmHOX2a(1)
<---------
PCF2
------>
NtERF2
<---------
ATHB12
----->
ARR10
--------->
AtLEC2
--------->
At4g35610
--------->
DEAR3(1)
<---------
GLK1(1)
--------
->
CCA1(2)
<-------
TEIL
<---------
ZAT18
---------->
DOF2
<-----------------
AGL2
--------->
MYB52(1)
attctcatgggatccatgcagaggaaccgtggcagtgagcttagtgggagcgaaagccgtcgccat
tgctatcaatggaaaccccaatgagattaacgga
49200
------
------
-------
<-------
<------
ZmHOX2a(2)
<------
NtERF2
*
TSS
<---------
ARR14(2)
----------->
GT1
<---------
DEAR3(1)
<---------
At4g35610
------
GLK1(1)
---------->
DOF2
<---------------------
WRI1
<-----------
RAV1(2)
----->
ARR14(2)
--------->
AHL20(2)
<---------
LBD16
==================
HOX2a_HOX2a
----->
GLK1(1)
--------->
LBD16
--------->
At4g35610
<------
ZmHOX2a(1)
------
ARR14(2)
--------->
HSFB2a(2)
--------->
ALFIN1
--------->
At4g35610
>
GAMYB
<---------
HSFB2a(2)
--------->
CCA1(2)
<---------
At4g35610
--
GT1
<---------
LBD16
<---------
At4g35610
<------
NtERF2
--------->
ARR14(2)
->
ANAC46
<----------
DOF2
<---------
ZAT14
--------->
CCA1(2)
<------
NtERF2
attcggaaaaaaaaaaaaaaaactttctgggaaaataaaagagagcagagatgggcggagagaacaagagatgagaggcagaggag
gcagacgatcccgg
49300
------>
MYB46(1)
<---------
ALFIN1
<---------
AHL20(2)
--------->
AHL20(2)
<---------
YAB1
<---------
AHL20(2)
<---------
ALFIN1
<----------------
<---------
AHL20(2)
--------->
AHL20(2)
------>
MYB83
<---------
ATHB12
<---------
AHL20(2)
--------->
AHL20(2)
<---------
MYB55(2)
------------>
CBF
<---------
AHL20(2)
<---------
AHL20(1)
--------->
MYB46(3)
>>>>>>>>>>>>>>>>>
LFY
--->
LBD16
<---------
AHL20(1)
--------->
AHL20(1)
<---------
TCP20
<---------
DOF5.7(2)
>
NtERF2
--------->
AHL20(1)
<---------
ARR11(3)
<---------
TCP15(1)
--------->
ZAT6
<-----
-->
LBD16
<---------
AHL20(2)
--------->
ARR11(3)
--------->
PCF2
--------->
DOF5.7(2)
<---------
--
LBD16
<-----------
TBP
<---------
MYB46(3)
<---------
ATHB12
--------->
TOE2(3)
<-----------
GT1
ctctaaatacttatatatatttttatttgtttgttcgaaaaatatttaatcaattttggacccacccttcttcgttaacaccaatgtttttttctttctt
49400
--------->
AHL20(2)
<---------
AHL20(1)
--------->
AHL20(1)
<------
ZmHOX2a(2)
--------->
AGP1
<---------
ARR14(2)
--------->
ARR14(2)
--------------->
AGL15
--------->
ARR14(1)
<---------------
AGL15
--------->
CCA1(2)
--------->
AHL20(2)
<------
ZmHOX2a(2)
<---------
AHL20(2)
--------->
AGP1
--------->
YAB1
<---------
AHL20(1)
--------->
ARR14(2)
--------->
AHL20(1)
<---------
ARR14(2)
--------->
AHL20(2)
--------
ANAC81
--------->
ARR11(3)
<---------
AHL20(2)
<----
-----
DOF2
<---------
ARR11(3)
<---------
ANAC55(2)
<-----------
GT1
-----------
-
DOF2
<---------
CCA1(2)
------>
ZmHOX2a(2)
<---------
YAB1
--------->
YAB1
<----------
DOF2
-------
ttcatttcatctcttaatttcaagatccgatctacaaatataatccttgttaagtatgctcaacataatttattttcttctttaactcgaattggttaat
49500
<---------
AHL20(2)
--------->
AHL20(2)
<---------
At4g35610
----------->
GT1
--------->
At4g35610
------>
ZmHOX2a(2)
--------->
YAB1
--------->
YAB1
--------->
At4g35610
--------->
TOE2(3)
-----
ATHB12
<---------
ARR11(3)
--------->
TOE1(3)
<----------
DOF2
>
GT1
--------->
ICU4
--------->
ARR11(3)
<-----------
GT1
<---------
ANAC58
-->
WOX13(1)
<-----------
GT1
<-----------
RAV1(2)
<-----------
GT1
<---------
ANAC58
<-
caatagtggaatcatcaaattaacaaaatgatctgaacaaattcaggtgaataaccataaaattctaaccatttagaaatatggcttttcaattgagttt
49600
<---------
MYB52(1)
<-------
TEIL
<---------
TOE1(3)
------>
ZmHOX2a(2)
<------
ZmHOX2a(2)
--------->
AGP1
<---------
TOE2(3)
--------->
ARR14(2)
<----------
DOF2
---------->
DOF2
<---------
ARR14(2)
----------->
GT1
--------->
ARR11(3)
<----------
DOF2
-----
----------->
ARR10
--------->
ARR11(3)
<---------
ARR11(3)
<---------
MYB111(1)
-------
--------
TOE2(3)
<----------
DOF2
<---------
AHL20(2)
<--------
P
<-------
TEIL
--------->
ZAT6
taagaatagatccgttttctttaagatttgtatataatcccataaatcttttgttatcaggtagagctatagatgcaactacttttgactctaaaagaaa
49700
<---------
YAB1
<---------
MYB52(1)
------>
MYB46(1)
--------->
YAB1
------>
MYB83
<---------
YAB1
-------->
P
-------->
ATHB1
------>
ZmHOX2a(1)
<---------
ICU4
------>
MYB46(1)
--------->
AHL20(2)
------>
MYB83
<---------
AHL20(2)
------>
ZmHOX2a(1)
--------->
AHL20(2)
<-------
GAMYB
--------->
YAB1
<-----------
GT1
---
------>
GT1
<---------
MYB59
--------->
ICU4
<---------
AHL20(2)
------>
ZmHOX2a(1)
--->
DOF2
--------->
TOE2(3)
<---------
ATHB51
--------->
AHL20(2)
<<<<<<<<<
MYB2
---
gaaaattgaatttaaaacctaattcctaccgttactactaaattattatgaaacatatttaatcctctaaacaacattttttggttttcctatttctctt
49800
Previous
Next
AGI:
At1g01090.1
Description:
PDH-E1 ALPHA (PYRUVATE DEHYDROGENASE E1 ALPHA); pyruvate dehydrogenase (acetyl-transferring). similar to AT-E1 ALPHA (pyruvate dehydrogenase complex E1 alpha subunit), pyruvate dehydrogenase (acetyl-transferring) [Arabidopsis thaliana] (TAIR:AT1G59900.1); similar to unknown [Populus trichocarpa] (GB:ABK95003.1); contains InterPro domain Dehydrogenase, E1 component; (InterPro:IPR001017)
Range:
from: 47485
to: 49286
Orientation: Reverse
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.
printer-friendly version