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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                                                                      ------>NtERF2
                                                                                     --------->DEAR3(1)
                                                                                     --------->RAP2.3(3)
                                                                                    --------->ERF1
                                                                                   --------->At4g35610
                                                                                  --------->DEAR3(1)
                                                                              --------->MYB46(3)
                                                 <---------YAB1             --------->ARR14(2)
                                               <---------ICU4               ------->TEIL
                     <---------At4g35610       --------->YAB1          --------->MYB52(1)     ------
                     --------->ZAT2 <---------GLK1(1)              --------->ANAC46--------->ZAT14
                     <---------ZAT2 --------->GLK1(1)              --------->ANAC58<---------At4g35610
------->LBD16        --------->At4g35610  <----------DOF2          --------->ANAC58--------->ABI4(1)
------->At5g28300   ----------->RAV1(1)   <---------DAG2  ---------->DOF2   <---------ARR14(2)------
-->ZAT18    <---------At4g35610---------->DOF2<---------YAB1     <---------ALFIN1--------->ANAC46
 
ccgtgaaacagtcgctgcttctccagcagaactcaaaagaattccctttattattattcacaaaagcctcacccaaacgaatccaccgcagccaaaacct  37400
                                   <---------ARR11(1)
                                <---------ANAC58
                                <---------ANAC58
                                <---------ANAC55(2)
                                --------->ANAC55(2)
                               <-------TEIL
                             <---------ARR14(2)                                                    -
  <---------ARR11(3)         <---------GLK1(2)                                                    --
  --------->ARR11(3)         --------->ARR14(2)                                                 <---
  --------->ARR14(2)   --------->YAB1                                    <---------AHL20(2)     ----
  <---------ARR14(2)  <---------ATHB12                                ----------->GT1           ----
 <---------CCA1(2)    --------->MYB46(3)          <----------DOF2 --------->ARR11(3)            <---
--->TOE1(3)         --------->WOX13(1)     <---------YAB1       <---------TOE2(3)  --------->HSFB2a(2)
--->TOE2(3)       <---------ATHB12<---------CCA1(2)      <---------At4g35610       <---------HSFB2a(2)
 
tcacaaatcttcatatcagtaatcaatcaccagattcgtatcatttatgctaacttttagagctaataagatttagttaatcgcttctataagtttctca  37500
            ------>ZmHOX2a(2)
            ======================HOX2a_HOX2a
            ============================HOX2a_HOX2a
           <------ZmHOX2a(2)
           =======================HOX2a_HOX2a
           =============================HOX2a_HOX2a
          --------->ARR11(3)
         <---------GLK1(1)
         --------->GLK1(1)
   --------->MYB52(1)
-------->At4g35610
------->RAP2.6(2)                                ----------->GT1
------ZAT2--------->AGP1         --------->HSFB2a(2)                                      --------->ANAC58
----->At4g35610                  ------>ZmHOX2a(1)                                        --------->ANAC58
----->ZAT2<---------ARR11(3)     <---------HSFB2a(2)    ----------->GT1              <----------ID1
------At4g35610            <------ZmHOX2a(1)--------->YAB1   <-----------GT1        <------ZmHOX2a(1)
 
gcagccaaacagagatcttagtatgttataggaatcctagaaactgctcataatgtaaactgttatacccttgagagtagccatggaggagacaagtatg  37600
                             --------->LBD16
                            --------->ANAC46
                            --------->LBD16                                                  <------
                           --------->HSFB2a(2)                                               -------
                           <---------LBD16                                                   <------
                           --------->LBD16           --------->YAB1                          -------
                      <---------GLK1(1)             --------->ICU4                          <-------
                      --------->GLK1(1)        --------->LBD16                              --------
                  --------->LBD16             --------->ANAC46                            --------->YAB1
                 <---------LBD16              --------->HSFB2a(2)                --------->ARR11(3)
                <---------LBD16               --------->LBD16                   --------->RVE1(1)
             ----------->HVH21               <---------LBD16                    --------->CCA1(1) <-
           --------->At4g35610               <---------HSFB2a(2)              --------->AHL20(2) ---
           <---------At4g35610               --------->HSFB2a(2) --------->ANAC58--------->GLK1(2)--
         --------->YAB1    <---------HSFB2a(2)<---------HSFB2a(2)--------->ANAC58<---------ARR11(3)
 
caatctgacttatcatctcaccgggaactccccggagaagtcatcgttcccggaaataatcaaatcggaagcaaaacaaaaaaaaatctctaaaaataaa  37700
   --------->MYB52(1)                                >>>>>>>>>TBF1
---AHL20(2)                                    >>>>>>>>>TBF1  >>>>>>>>>TBF1
-->AHL20(2)                                 >>>>>>>>>TBF1  >>>>>>>>>TBF1
---AHL20(1)                              >>>>>>>>>TBF1  >>>>>>>>>TBF1
-->AHL20(1)                             xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)
--AHL20(2)                            >>>>>>>>>TBF1------------------------>ANAC81
->AHL20(2)                           xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)
--------AHL20(2)                   >>>>>>>>>TBF1  >>>>>>>>>TBF1
------>AHL20(2)            --------->MYB52(1) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)
------->AHL20(2)         <---------ARR11(3)xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)<---------TOE2(3)
 
tttaaaaaacagagagaagaaggaagaagataactgaagaagaagaagaagaagaagaagaagaagaagaaggaagactgttttaggctgaagaagactg  37800
                                                                           ----------->GT1
                                                                     <---------WOX13(1)
                               ----------->RAV1(1)                  <------------CBF
            --------->ANAC58   --------->RAP2.6(2)                <---------AHL20(2)
            --------->ANAC58--------->ANAC46                      <---------YAB1
   >>>>>>>>>TBF1   --------->ANAC58       <-----------GT1        <---------AHL20(2)             ----
>>>>>>>>>TBF1      --------->ANAC58    *TSS                      --------->AHL20(2)  <---------TOE2(3)
 
gaagaagaagaagagaagccagaagcaatctcagccacaacaatttttcccctaatttttggaaaaattttaattgaaaagtttatttgaggctggaaca  37900
                                                  --------->ARR11(3)
                                              ----------->GT1
                                             --------->ALFIN1
                                            <-------PIF5
                                            ------->PIF5
                                            ------->MYC4
                                            <-------MYC4
                                            ------->MYC3
                                            ------->MYC2                   <----------DOF2
                                            <-------MYC3                   <---------DAG2
                                            <-------MYC2                 <---------------AGL15
                                           --------->ANAC55(2)           --------------->AGL15
                                           --------->TGA1a              <-----------------AG
                                           ===========================================bZIP_DOF
                                           <---------O2                <---------ZAT18
                                           --------->O2                <---------ZAT14
                                           <---------ANAC55(2)         --------->ZAT18
                                           <---------TGA1a             --------->ZAT14
                                          ------------>OsbHLH66      --------->ANAC46
                                         <---------ALFIN1           --------->At4g35610         <---
             ----------->GT1        --------->ARR14(2)            --------->ETT(2)              <---
        ----------->TBP             <---------ARR14(2)            <---------ZAT14    --------->ARR11(3)
    ----------->GT1                 <-----------ARR10             <---------ETT(2)   <---------ARR11(3)
----->At4g35610    --------->MYB52(1)<------ZmHOX2a(2)            --------->ZAT14   <---------CCA1(2)
 
gcaccaagggtataaatggaaaaaacagaagtcatcgcagatcgacacgtggtgatattgtagtggctgtctactgcactttttggtatatctcaagttg  38000
                                         --------->DAG2  --------->ZAT18
                                        ---------->DOF2  <---------ZAT18
                                    <------MYB46(1)     --------->PCF5
                                    <------MYB83  --------->ALFIN1                   ---------------
                                   <---------TOE2(2)  <---------MYB46(3)         <---------YAB1
                                   <---------TOE1(2) <---------AtMYB61           --------->ICU4
                                <---------TGA1a   <---------AtMYB61         <---------DOF5.7(2)
                                --------->ANAC46 --------->ZAT18         --------->REM1(2)
                                --------->O2     <---------ZAT14      <---------ANAC58
                                --------->TGA1a  --------->ZAT14      <---------ANAC46
                           --------->At4g35610  --------->ALFIN1      <---------ANAC58
              <---------HSFC1(2)<---------O2  <---------ANAC58        <---------ANAC55(1)
         <-----------RAV1(2)    ===================bZIP_DOF       <---------ANAC58   <--------------
      --------->ANAC46     <---------At4g35610<---------ANAC58    <---------ANAC58--------->ATHB12
------ANAC58  --------->HSFC1(2)--------->ANAC55(2)  --------->ALFIN1 --------->ANAC55(2)
------ANAC58<---------GLK1(2)   <---------ANAC55(2)<---------ANAC46   <---------ANAC55(2)
 
cttctctacgagccagaagcttcaatgtgaagctcacgtaggtaaaagtgagtgtggtggtccacaattgcttacgtgtaaacgattattggtacaaact  38100
                          --------->ZAT2
                          <---------ZAT2
                          <---------At4g35610
                         ------>NtERF2
                        <-----------RAV1(2)
                        --------->ATERF1(2)
                        <---------ATERF1(2)
                       --------->ATERF1(1)
                       <------NtERF2
                      ------>NtERF2
                      --------->ABI4(2)
                  <---------DEAR3(1)
                 <-------TEIL                    <---------ARR14(2)
                 --------->SPL7               <---------ANAC46          ----------->GT1
               <---------ARR14(2)             --------->ANAC55(2)     <---------ANAC58
               <---------SPL7        --------->ZAT14                  <---------ANAC58
               <---------PCF2        <---------ZAT14           <---------AGP1
              <------MYB83--------->At4g35610 <---------ANAC55(2)------>ZmHOX2a(2)
              <------MYB46(1)        --------->ZAT18           --------->ARR14(2)
             <---------------AtSPL3<---------------AtSPL8      <---------ARR14(2)                  <
             <---------MYB46(3)  <---------AtMYB61             --------->ARR11(3)               <---
>AtSPL8      <---------------AtSPL8<---------------AtSPL3      <---------ARR11(3)--------->ARR11(3)<
-AtSPL8     --------->ALFIN1  ----------->HVH21  --------->ARR14(2)   <---------ANAC46         <----
 
tggacgactaaacaagtgggtacggtgccagctgtgatggtgtactgctacgtattggctatgctggatctgggcttgtaataagacattgtatgggcct  38200
                                <---------TOE2(3)
                                <---------YAB1                                              --------
                               <-----------GT1                   <---------ZAT2<---------ANAC46
                         <---------ANAC58               --------->ZAT2--------->LBD16       <-------
                         --------->ANAC55(2)           --------->ANAC58        <---------ANAC58
    --------->ANAC46     <---------ANAC46              --------->ANAC58  <---------ARR14(2) --------
---------DAG2            <---------ANAC58         <---------ETT(1)   <---------LBD16       ---------
------ALFIN1       <---------AHL20(2)             --------->ANAC46  <---------LBD16      <---------AHL20(2)
----------DOF2   <---------AHL20(2)           <-----------GT1    --------->ZAT2<---------ANAC58
--NtERF2         --------->AHL20(2)         --------->AHL20(2)   <---------ZAT14        --------->YAB1
 
cacttttacgcctattctatataaatttgcgtattaacatagttgaattaaacccgacaagcttggactgctcggggaacttgcgtctgtataaaaatct  38300
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AGI:  At1g01060.1   
Description:  LHY (LATE ELONGATED HYPOCOTYL); DNA binding / transcription factor. similar to CCA1 (CIRCADIAN CLOCK ASSOCIATED 1), transcription factor [Arabidopsis thaliana] (TAIR:AT2G46830.1); similar to late elongated hypocotyl [Castanea sativa] (GB:AAU20773.1); contains InterPro domain SANT, DNA-binding; (InterPro:IPR001005); contains InterPro domain Homeodomain-like (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding (InterPro:IPR014778); contains InterPro domain Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447)
Range:  from: 33666    to: 37840    Orientation: Reverse
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.

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