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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
--------->
TOE2(3)
<---------------
AGL15
--------->
TOE1(3)
--------------->
AGL15
----------------->
AG
----------------->
AGL2
--------->
PCF2
<-----------------
AGL2
<---------
ATHB12
------->
ARR11(3)
<-----------------
AG
--------->
GLK1(2)
------>
YAB1
--------->
YAB1
--------->
GLK1(2)
--------->
DAG2
-----
WOX13(1)
<---------
YAB1
<------
NtERF2
--------->
AHL20(2)
--------->
YAB1
-->
ATHB12
--------->
YAB1
<---------
WOX13(1)
<---------
ATHB12
---------->
DOF2
--
ATHB12
------->
TEIL
<-----------------
AGL1
--------->
WOX13(1)
<---------
AHL20(2)
--------->
ANAC46
tgatattgactgaatctaacatcataaccctaattggcagagagagaatcaatcgaatcaagagtattaaatggaaaaagcgaatcaagaccccacaagg
32800
<--
<--
<---------
ATHB51
------->
TEIL
---
--------->
ANAC58
--------->
ANAC55(2)
---------
<---------
At4g35610
--------->
ANAC58
<---------
TOE2(3)
<--------
---------->
DOF2
--------->
KAN4(2)
--------->
DOF5.7(2)
------>
MYB83
------>
ZmHOX2a(1)
--------->
YAB1
--------->
ARR11(3)
------>
MYB46(1)
============================
HOX2a_HOX2a
<---------
AHL20(1)
<---------
MYB59
========================
HOX2a_HOX2a
<---------
CCA1(2)
---------->
DOF2
---------
--------->
TOE1(3)
<------
ZmHOX2a(2)
<-------
TEIL
<---------
TOE1(3)
-------------
--------->
TOE2(3)
<------
ZmHOX2a(2)
<---------
TOE2(3)
<---------
DOF5.7(2)
-------------
gaaaacaatccttaaagcagacttgagatcgatcatacccaaattatggattcatatattgttaacgtatcgattactgaaaagatgtataccaaatctg
32900
<----------
DOF2
<---------
DAG2
-------
ZAT14
--------->
ANAC58
-------
ZAT18
--------->
ANAC46
------>
ZAT14
--------->
CCA1(2)
>
GLK1(2)
<---------
TOE2(3)
--------->
ANAC58
------>
ZmHOX2a(2)
-
ARR14(2)
<---------
WOX13(1)
<---------
HSFB2a(2)
--------->
ANAC58
<---------
ARR11(3)
>
ARR14(2)
--------->
ATHB12
----------->
RAV1(1)
--------->
DAG2
--------->
ARR11(3)
---->
AGL1
<---------
YAB1
--------->
ANAC58
---------->
DOF2
--------->
YAB1
---->
AG
<---------
MYB46(3)
<----------
ID1
--------->
AHL20(2)
<----------
DOF2
ttcactttttctctatagactcgatggatgattgagatttgaagcaacaaaatacccagaagattaaacatggaaaagcatcaaactttgatgatcttag
33000
<---------
MYB52(1)
--------->
MYB46(3)
--------->
YAB1
---------->
DOF2
--------->
ICU4
--------->
ANAC58
--------->
ANAC58
----------->
GT1
------>
ZmHOX2a(2)
<---------
MYB46(3)
--------->
ANAC58
---------->
DOF2
------->
TEIL
--------->
ANAC58
<----------
DOF2
-------
aacgatgacaaaagaaaaaaaaacgtac
ctttggatcgaaacgaaacagccgattgttgttttctttatcgcaaggatgatgaagaaactttgggagaga
33100
--------->
ANAC55(1)
--------->
ANAC46
<---------
STY1(2)
--------->
ANAC55(2)
--------->
STY1(2)
<---------
LBD16
--------->
ANAC58
--------->
CCA1(2)
<--
<------
MYB83
<---------
ARR11(3)
---
<------
MYB46(1)
----------->
GT1
*
TSS
--------->
ARR11(3)
<---------
YAB1
<--
<---------
AtMYB61
<---------
ALFIN1
<------
ZmHOX2a(2)
--------->
YAB1
<---------
MYB52(1)
------->
TEIL
--------->
AtMYB61
<---------
TOE2(3)
---------->
DOF2
--------->
ANAC58
----------->
GT1
--------->
DEAR3(1)
<---------
AHL20(2)
--
---->
GT1
<-------
GAMYB
--------->
ATHB12
--------->
MYB46(3)
<----------
DOF2
--------->
ZAT6
aacaagtgaagcccgttggtctagcaagtgattgtaaaatgtatatatgagtc
accaccgagatatacggatcaaacttttatattatcgtaacactcac
33200
--------->
AHL20(2)
<---------
ATHB12
--------->
ICU4
<---------
ATHB51
------------>
CBF
<---------
ATHB12
--------->
ANAC55(2)
--------->
ANAC58
<---------
ANAC55(2)
--------->
ANAC46
--------->
CCA1(2)
--------->
ANAC58
--------->
ANAC58
<---------
ARR11(3)
--------->
ANAC46
--------->
ZAT6
--------->
ARR11(3)
<-----------
GT1
------>
ZmHOX2a(1)
-------
ZAT14
<---------
AHL20(2)
<---------
YAB1
<-----------
HVH21
------>
ZAT14
<--------
HAHB4
<----------
DOF2
--------->
YAB1
<---------
ANAC58
-------
ZAT18
-------->
ATHB1
<-----------
GT1
<---------
DAG2
--------->
ANAC58
<---------
RAP2.6(2)
------->
ZAT6
--------->
ATHB51
<----------
DOF2
<---------
AHL20(2)
<---------
ANAC58
tacactaccactcaattatttacaaagatttacatctttttaaaaatactttattttttattacgaaacatagtttgtgtttttgcggtcactcctataa
33300
<------
MYB83
<------
MYB46(1)
<---------
MYB46(3)
<---------
AtMYB61
--------->
MYB59
--------->
MYB46(2)
<------
--------->
MYB111(2)
<---------
ARR11(3)
--------->
MYB111(1)
<-----------
ARR10
<------
MYB83
--------->
ARR14(2)
<------
MYB46(1)
<---------
ARR14(2)
--------->
AHL20(2)
--------->
ARR11(3)
--------->
AHL20(1)
<---------
CCA1(2)
<---------
ANAC58
<---------
AHL20(2)
----------->
GT1
<---------
ANAC58
<---------
ATHB12
--------->
CCA1(2)
<---------
AHL20(2)
<---------
ARR14(2)
<---------
ATHB51
<---------
ARR14(2)
--------->
AHL20(2)
--------->
ARR14(2)
--------->
AHL20(2)
--------->
ARR11(3)
--------->
AHL20(1)
<------
ZmHOX2a(1)
<---------
AHL20(2)
--------->
ARR14(2)
--------->
AHL20(2)
--
tctatgtaggatacttgcattacatttttcacaaataatttggtttggtagcaaggatatggctcattcagtgagaacaaaaaaattgtatatctactca
33400
------>
MYB83
------>
MYB46(1)
--------->
STY1(2)
<---------
YAB1
---
ATHB12
<---------------
AGL15
----------->
GT1
<---------
ANAC55(2)
------->
YAB1
----------->
GT1
<---------
STY1(2)
<----------
DOF2
--------->
ANAC55(2)
ttcatcagtaaaccaaattaagagattgaaatattgtataaactagctacacaatataagccttctttaggcctctattacttaagcttgtaatagggaa
33500
------->
GAMYB
<---------
MYB52(2)
--------->
MYB46(3)
<---------
WRKY38(1)
<----------
DOF2
<---------
MYB52(1)
<---------
ARR11(3)
<-------
GAMYB
--------->
ARR11(3)
<---------
ANAC58
<---------
ANAC46
<---------
ANAC58
<---------
ZAT6
---------->
DOF2
<----------
DOF2
--------->
ALFIN1
<---------
REM1(1)
----------->
GT1
<---------
DAG2
<---------
ANAC46
<
aatgttgtaatgtaggcccaagtagtgtgagtaaaatctttaaggcccagcctagcacctttgggcatttggcgttgggcaacgagcgccttcaagtttg
33600
<---------
ICU4
<---------
YAB1
<-----------
GT1
--------->
ICU4
--------->
YAB1
--------->
YAB1
<---------
YAB1
-------->
ATHB1
<--------
HAHB4
<---------
ICU4
<---------
ICU4
<--------
HAHB4
<----------
DOF2
--------->
YAB1
-
--------->
ICU4
<-----------
GT1
<---------
YAB1
<--
--------->
GLK1(2)
---------->
DOF2
<---------
REM1(1)
--------->
YAB1
---
--------->
MYB52(1)
--------->
AtMYB61
----------->
GT1
<----------
DOF2
<----
---------
MYB52(2)
<---------
YAB1
<---------------------
WRI1
<-----------
GT1
<-----------
GT1
-------
aaacaaacagagagaatcattatgaagaaacaccaaaagacaaaactttctaagttgtaactttt
gtacagttcatcttttatcattataaactatttat
33700
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AGI:
At1g01050.1
Description:
ATPPA1 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 1); inorganic diphosphatase/ pyrophosphatase. similar to ATPPA3 (ARABIDOPSIS THALIANA PYROPHOSPHORYLASE 3), inorganic diphosphatase/ pyrophosphatase [Arabidopsis thaliana] (TAIR:AT2G46860.1); similar to unknown [Populus trichocarpa] (GB:ABK94595.1); contains InterPro domain Inorganic pyrophosphatase; (InterPro:IPR008162)
Range:
from: 31170
to: 33153
Orientation: Reverse
Links:
TAIR
MIPS
AGI:
At1g01060.1
Description:
LHY (LATE ELONGATED HYPOCOTYL); DNA binding / transcription factor. similar to CCA1 (CIRCADIAN CLOCK ASSOCIATED 1), transcription factor [Arabidopsis thaliana] (TAIR:AT2G46830.1); similar to late elongated hypocotyl [Castanea sativa] (GB:AAU20773.1); contains InterPro domain SANT, DNA-binding; (InterPro:IPR001005); contains InterPro domain Homeodomain-like (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding (InterPro:IPR014778); contains InterPro domain Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447)
Range:
from: 33666
to: 37840
Orientation: Reverse
Links:
TAIR
MIPS
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publications
when using AthaMap.
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