Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved binding sites (0-100)   1        10        20        30        40        50        60        70        80        90        100                                                                          --------->AGP1      <------NtERF2                                                                    ------>ZmHOX2a(2)      ------>NtERF2                                                                    ======================HOX2a_HOX2a                                                                   <------ZmHOX2a(2)      ------->GAMYB                                                                   =======================HOX2a_HOX2a                                                                 <------ZmHOX2a(1) ------>ZmHOX2a(1)   agcttcttccaatttccctgtgcttgaatatatattggctagtgttacaaatgcagtttcagaagtaggatccagctctagaatcctctcagccgccctt  26553600                                              --------->PCF5      <-------TEIL                         --------->ALFIN1          <---------AtLEC2               < <---------ALFIN1<----------DOF2         --------->ALFIN1      ------>ZmHOX2a(1)                  ---   cttccacgttcagtgtctcctttcgccttacacgcattgagaagtgtggtccagactacatcgtccttcttccatggcatctcattgatcatctgctctg  26553700          <------NtERF2         -------->P         ------>NtERF2         <-----------GT1 ---------ALFIN1             <------ZmHOX2a(2)           <--------P -------->RAV1(1)   <---------ALFIN1     <-------TEIL   <-------GAMYB  <-----------GT1          -----   caacacttggccggcctgctctacacagcagatcaaccatacatccatagtgttccttggttggtctgataatatacttctcttgcatcaagttgagata  26553800                              ---------->DOF2                     ------>ZmHOX2a(1)   >>>>>>>>>MYB2    --------------->AGL15 ------>GT1        ----------------->AGL1           ---------->DOF2            -------->P   gtgaaaaccaaggtcatgatgtcctgaatgagtaaagggcgagagaatgctgatgaaagttacagagtcgggtctgagaccaaccttcagactcttctca  26553900           <----------DOF2    ------>ZmHOX2a(2)   <------ZmHOX2a(2)  --------->AGP1                                                                            *TSS  <---------AGP1     <----------DOF2            ---------->DOF2                       <----------DOF2   aacagatctatagctttttaggtctttccatgttctgcatatccattgatcaaagaaacaatatcatctctgtctatttctgcgaatactttgaagcttc  26554000                    <-------TEIL                --------------->AtSPL8                <---------------AtSPL8                                 ---------->DOF2  ------->TEIL   ttcgatacttccacattttgagtacatattaatcagagcactacgaatagtagagttctgttctaaactaagataaagagcaagcgcatgaacttgcctg  26554100                                                               <-----------GT1                                                              ----------->HVH21             ---------                       ------>ZmHOX2a(1)            <------ZmHOX2a(1)     ---------->ID1   <-------TEIL   ccttgctcaagaactgccatggttcctgaaacactcagcaaactagtaagagcaggatttggttttgaccctgcttgtctcatccatgagaaatacgtaa  26554200              ----------->RAV1(2)                                                     <-------TEIL -->GT1   ------>ZmHOX2a(1)                                              ----------->RAV1(2)   aaacttcttctcctaaacctggctgagtgcctgagagtaccctcgagtaatcgtgctccacgaaataatgtgaacacctgattcgagatacggacaatgt  26554300                                                                                                  ---                                                                          <-------GAMYB  ------>ZmHOX2a(2)                      ----------->TGA1                                   ----------->GT1<------ZmHOX2a(2)                    -------->HAHB4                                 -------->HAHB4     <---------PCF2   tctcgaccggtttctcgagtaatgatgacgcatttgtacaaaaacatgttgaatttgtggaatcgctaatgattacggttaaatggtgggatccaaaatc  26554400                                                         ---------->DOF2                                                   ----------->GT1                                                 ---------->DOF2 -------->GT1 <-----------TGA1      ----------->GT1<----------ID1                                   -   tggttatatttcaaaacgtcattttaatttagtatgtatagaaaaaaatcaaaaagaaaaaaagagttgaaaactttttaagaaaaaaaaattaaaaata  26554500  Previous    Next  AGI:  At5g66455.1    Description:  pseudogene of pentatricopeptide (PPR) repeat-containing protein Range:  from: 26553267    to: 26553992    Orientation: Reverse Links:  TAIR  MIPS