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   Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved binding sites (0-100)
 
1        10        20        30        40        50        60        70        80        90        100 
           ------>ZmHOX2a(1)
         ----------->RAV1(2)
        ------>ZmHOX2a(1)
        ==================HOX2a_HOX2a
    <-----------GT1<------ZmHOX2a(2)                                  ----------->RAV1(1)       <---
-------GT1 ===============HOX2a_HOX2a                        ---------->DOF2      ------>ZmHOX2a(2)
  
accggtttttcctcctggttcgatccaatgtagcatgagagaacttcttctcttgttacaaacgcaaagtctgcaacattatcgatctgcttctgatcag  26541900
  <------NtERF2
 ------>NtERF2
------->GAMYB                                                    -------->P
------ALFIN1                               ---------->DOF2      <-----------GT1
  
cacccgccgaaacatccacaatcacaacctcaacctgttattccaataaaacggctcacaaaaatatcaaccattcacaatcttccaattctccagaaaa  26542000
                                                                 <-----------HVH21
                         ----------->GT1        <-----------RAV1(2)        <-----------ARR10
                ------>ZmHOX2a(1) ----------->GT1                <-----------TGA1
  
cttaaaattgagtcaaatccttcatatttcgtaaaattggtcaatagtgattcaggtgagtctttcttcgtcagagctaatcttaccttggaagacgagt  26542100
                                                                          ----------->HVH21
                      ------>ZmHOX2a(2)                               <-------GAMYB
          <------NtERF2                                              --------->ABI4(2)            <-
       <---------ABI4(2)       ------>ZmHOX2a(2)                  ------------>AtMYB77<<<<<<<<<TAC1
  
ttttggagaatgcgccgatatttgatcgcactgatccagcaaggaatcgtagctcatcaagcttggtatcggcggttccgacacagaacactcgataagt  26542200
                                          <---------ALFIN1
                                     <------ZmHOX2a(2)
                                ------>ZmHOX2a(1)------>NtERF2            <-------GAMYB
  <----------DOF2      <------ZmHOX2a(2)----------->RAV1(1)              <-----------RAV1(1)
----------GT1          ================HOX2a_HOX2a    *TSS        --------->ALFIN1
  
ttcacctttcatattcgtctccacagatcaaaatcctccgatccaacactgccgtctgatttctatgcggtgttgtttgttggatttgaagcaaaaaaac  26542300
                                                    <---------TGA1a
                                                <-----------HVH21
                                             =================MYC_MYB
                                            ==================MYC_MYB
                                            <-------GAMYB
                                        ======================MYC_MYB
                                        ------------>AtMYB77
                                       <-----------RAV1(1)
                                     <------------CBF                  ----------->GT1
                          =========================RAV        <--------ATHB1
                          <-----------RAV1(2)<--------P       <------------ATHB5
  
gtagtagcaaatagtagtaagttgttaagtcagctgttcttattgtcggttggtcacgttcccaataattcgccgtgtaaatttgttttattgcaaaatt  26542400
                                                           <----------DOF2
                                                        ------->TEIL
                                                   ---------->DOF2
              ----------->GT1                  <-----------GT1             <-----------GT1      <---
  
gcctaaatgtttttgttttgtgaaaaaacattcccagtggtttttgtttttaacgaaagtacctttaaattttgtttattacataatacaccctgtaatt  26542500
                                                                                            ------>ZmHOX2a(1)
--------GT1                                   ----------->GT1 ------->TEIL        <-----------GT1
  
ttctgtattagaaaactgcccttgagttatgtttaattcccccagagtacagtttattacatatgtaccaaatacacatatcatataacattttcctagt  26542600
                                            ---------->DOF2
                                   <----------DOF2              ------->GAMYB                 ------
  
ctcaacatgaaatctaaaaaatctacattgacagattactttcgtatcaaagaaacgactagagtaacagtcgttttgttcgtgcagctagcatgttgtg  26542700
                                                                        ------>NtERF2
----->HVH21                                     <-----------HVH21      ----------->HVH21
  
acacatggtatgcaaatttcttaaacaatgtgtccataatgtctactccgaagtcagctacaagcattgattcgctgaccgctcttatacagttggcttc  26542800
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AGI:  At5g66420.1   
Description:  similar to tm-1^GCR26 protein [Solanum lycopersicum] (GB:BAF75725.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO48327.1); similar to hypothetical protein [Thellungiella halophila] (GB:ABB45848.1); contains InterPro domain Protein of unknown function UPF0261 (InterPro:IPR010647)
Range:  from: 26538900    to: 26542255    Orientation: Reverse
Links:  TAIR  MIPS 
 
AGI:  At5g66430.1   
Description:  S-adenosyl-L-methionine:carboxyl methyltransferase family protein. similar to NAMT1 [Arabidopsis thaliana] (TAIR:AT5G04370.2); similar to NAMT1, S-adenosylmethionine-dependent methyltransferase [Arabidopsis thaliana] (TAIR:AT5G04370.1); similar to methyl transferase [Arabidopsis lyrata subsp. lyrata] (GB:AAP57211.1); contains InterPro domain SAM dependent carboxyl methyltransferase (InterPro:IPR005299)
Range:  from: 26542636    to: 26544025    Orientation: Reverse
Links:  TAIR  MIPS