Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved binding sites (0-100)   1        10        20        30        40        50        60        70        80        90        100                                                                            ---------->DOF2 ---------->DOF2 ----DOF2                              ------>ZmHOX2a(1)      <-------GAMYB     ----------->GT1   agatgttgttttaattcccttgtgagtttggtttttttttcctaggggaaaacattatgagttcagttgtataaacaaaagaaggaaatttaaaaagaga  26256300                                                       <-----------RAV1(1)                 ---------->DOF2             ----------->GT1              <-----------GT1      ------>ZmHOX2a(1)                   ---------->DOF2    <----------DOF2                     <---   tgtttctcctaaattatatcaaagaacaaattgagatataaaataaaaggttatattatgttgctttgagggaaataaaccacttcgataattgaaatta  26256400        ----------->HVH21                                                ---------->DOF2 <-------TEIL ----------->HVH21  <-------TEIL                      ----------->GT1 ------------AtSPL8           <------ZmHOX2a(1) ---------->DOF2  ---------->DOF2   gggttcgtatatgacagtgaccgatgttcgaaggatgcatcatcaaataaaaaagctgtattaatcaaaaagttataaaggctaatcataagcgtgatta  26256500                                               <------NtERF2                                           <-----------RAV1(1)                                     <--------HAHB4    <-----------HVH21                ------>NtERF2    <-------TEIL ------>NtERF2                                        >>   taatgttaatgactgtgcctccaccaatcaacgcattcatcattactgcggcacttacgtcaacgaattaatcttttatcgataaaattccaagaggccc  26256600                                                             <---------------AGL15                             <---------------AtSPL3          --------------->AGL15                            ---------->DOF2                  <----------DOF2                <--------ATHB1                              <-----------------AGL3                <------------ATHB5                <------ZmHOX2a(2) >>>>>>>MYB98   -------->ATHB1                   --------->AGP1                  <----------DOF2   taacttaggcttaatcaattattgggcctataaagaacggcaactgatgtagatccaaatgggctttatttagtaagcccaaactttatgttttctctta  26256700                                                                                            <--------                                                                                          ------>NtERF2                                                            <-----------HVH21             -----------                                                     ------>ZmHOX2a(1)                   ----------->HVH21     ------>ZmHOX2a(1)      *TSS       ----------->GT1    --------->ALFIN1          ------>ZmHOX2a(2)   tatcttcctgctctgttattagaaagaatctccgatttagatagaaacaacaatcctccggtggtcactcgctaatctccgtttgatctcgccgacactc  26256800                                                                 ----------->HVH21                                                                <-----------HVH21                                                            ------>NtERF2                                                           <---------O2                                                           ----------->HVH21                                                           --------->O2                                                          <------NtERF2                                                         ------>NtERF2                                                        ----------->HVH21                                                       ------>NtERF2  <----------DOF2                                      <------NtERF2 -ALFIN1                    ------>ZmHOX2a(1)    <-----------HVH21                   ----------->GT1 >RAV1(1)       <------ZmHOX2a(1)  ---------->DOF2   <------NtERF2      ---------->DOF2 <----------TaMYB80   gagccttttaccgatgaaggatggagattccttaccaataagcacttcttccgtcgcggcgacgacggtgaccggaaagaaggaaaccggttattccgct  26256900                                                                                        <-------GAMYB      ---------->DOF2                                <----------DOF2          <--------ZAP1        --   ctcttctcgaaaggccggtacaagttttgggccttagctgcgattctgttactcgctttctggtcaatgctcactggcacggtcaatctccgttggtctg  26257000                                                  ------>ZmHOX2a(2)                                                 <------ZmHOX2a(2)                          ------>ZmHOX2a(2)     <-----------ARR10                          ============================HOX2a_HOX2a                         =============================HOX2a_HOX2a        <-----------GT1  <------ZmHOX2a(2)      <---------AGP1                           ------>ZmHOX2a(2) --------->GT1  <-----------GT1 <----------DOF2<------ZmHOX2a(1)                        <------ZmHOX2a(2)   ccggtaacattaaccatttcaccgacgatctcgtctttcccatccacgaggatctcgatgttcttgtgagtcttcttcttcttcttcgcgatctgttttc  26257100                                                                                 <---------TGA1a                                                                                 --------->TGA1a                                                                     --------->ALFIN1                                                                 ---------->DOF2 <---------O2                                      ----------->GT1   <------ZmHOX2a(1)        --------->O2                        <-----------RAV1(1)    <------ZmHOX2a(1) ==========================bZIP_DOF   tgatttctgtgaattacgtttgatttgtgttgtgttgatgaggttattaggaaatggaggagagggagaaagtggtgaagcacatgtgggatgtgtataa  26257200  Previous    Next  AGI:  At5g65640.1    Description:  BHLH093 (BETA HLH PROTEIN 93); DNA binding / transcription factor. similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT5G10570.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO38705.1); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598) Range:  from: 26254281    to: 26256310    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g65650.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G36660.1); similar to unknown [Populus trichocarpa] (GB:ABK93535.1); contains InterPro domain Protein of unknown function DUF1195 (InterPro:IPR010608) Range:  from: 26256728    to: 26258741    Orientation: Forward Links:  TAIR  MIPS