Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved binding sites (0-100)   1        10        20        30        40        50        60        70        80        90        100                                                                                                ------>ZmHOX2a(2)                     <-----------GT1                                                          <------                  ------->TEIL                                                               <------ZmHOX2a(2)       <-----------GT1       ------>ZmHOX2a(1)                                              ------->TEIL   tgtgactatttacactcatgtatttccaatcctatttatattagtgttttttattttataaatgttttcatttatacatatgaattgttcaatggatcca  15963600                                          =========================================================MADS_MADS         ------->GAMYB                    --------------->AGL15        <----------ID1              ----------->GT1 -TEIL<-----------GT1             ---------->DOF2                                  <---------------AGL15   tattttaataaccacaaatttgcaaataaaattagaaaaagttactaaaaatatatattatcttaagattgattttaatttatttatatatttagcataa  15963700                                <-----------GT1                        ---------->DOF2                    <-----------RAV1(1)                   ------------>CBF                      <------------CBF                  <-----------GT1                <------------CBF            <-----------GT1   gatttgtagatttttttttttaacaataaagtttttactcttatcataagtaattgtctaattgttgcgagcaaattataaacccttgtagaacaaaaat  15963800                                                                                 --------------->AGL15                 ---------->ID1   <---------ALFIN1                               <---------------AGL15         <-----------GT1       <---------ALFIN1        <-----------RAV1(2)      <-----------------AGL3    ----------->GT1  <----------DOF2   ------>ZmHOX2a(1)    <-------TEIL      <-----------GT1 <------   agtgtagggtttatcatttctcgctttaaacgcccaccatcctctctatatctctctccaggtacgcttcgagctcgtttttactatttttagtctcttt  15963900                        ------>NtERF2                      <------NtERF2               ---------->DOF2  <-----------GT1       ----------->GT1 ----DOF2 <------------CBF <----------DOF2          <------------CBF  <----------DOF2   tgaatccaaaaccattgtaaaggagccgactttttttccaactgtactctacaaaattgtcaaatttcaaaactttttgattcgagttcgtgaaccatgg  15964000                                                                                                   --                                                                                                  <<<                                                                                                  <--                                                                                                  <<<                                                                                                  <<<                                                                                                  <<<      <------NtERF2                                                         <----------DOF2      <---    --------->ALFIN1   ----------->ARR10   <-----------GT1           <-----------GT1 <-----------ARR10   cgagaggcgtagctggagttttgcgtagagcctatagttcaagagttacggttctattctcgacacgaaatttacattcttttagagaatctgagtctag  15964100  <----------DOF2 ---->ZmHOX2a(2) <<<<<<GATA-2 ----ZmHOX2a(2) <<<<<<GATA-3 <<<<<<GATA-1 <<<<<<GATA-4 ------AGP1                     ------->TEIL             <-------TEIL  <---------AtLEC2          <---   atctctttgtaattctgattttgatgtgcccacgaaccggttttgttcgggtaatcgggttcggattcagtttccatggaatgattacagatttgggtgc  15964200                                                                         <--------P         ---------->DOF2                                               --------->ALFIN1      ----------->GT1<----------DOF2         ------->GAMYB             <-----------RAV1(1) -------DOF2     <------ZmHOX2a(1) ----------->GT1                 ---------->DOF2   tttgagattggtaaagttaggagcttttcgtctactgtggataataacggcgaaaatgatgatattgaagaaagtgttggttctgagagtgatgattatg  15964300                                                                  ----------->HVH21  <------ZmHOX2a(1)------->TEIL                             <--------P                              <   atgaggaaggtttgattaatgaacttagtgatgtagatgaaggcttgttgaatgattcagtggttgctgagacggatgagattggtagcgaggctgctcg  15964400                        ------>ZmHOX2a(1)          ------>ZmHOX2a(2)          =====================HOX2a_HOX2a         <------ZmHOX2a(2)--------->ALFIN1         ======================HOX2a_HOX2a ----------DOF2       ------>ZmHOX2a(2)                     <-------TEIL   tgctttgaacgatcggtatcatgatcctgtggagttgtacagggagcttaggggaagtgaagtgcgttctaagcttcagcatagtgaatgggatagtcta  15964500  Previous    Next  AGI:  At5g39840.1    Description:  ATP-dependent RNA helicase, mitochondrial, putative. similar to ATSUV3 (embryo sac development arrest 15) [Arabidopsis thaliana] (TAIR:AT4G14790.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN60906.1); similar to hypothetical protein OsJ_014453 [Oryza sativa (japonica cultivar-group)] (GB:EAZ30970.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO14959.1); contains InterPro domain Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); contains InterPro domain DEAD-like helicase, N-terminal (InterPro:IPR014001); contains InterPro domain DNA/RNA helicase, C-terminal; (InterPro:IPR001650) Range:  from: 15963997    to: 15966414    Orientation: Forward Links:  TAIR  MIPS