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Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved binding sites (0-100)
1 10 20 30 40 50 60 70 80 90 100
<xxxxxxxxxxxxxxxx
smallRNA(i)
<xxxxxxxxxxxxxxxx
smallRNA(i)
---------->
DOF2
----------->
RAV1(1)
<----------
ID1
<------
ZmHOX2a(1)
<----------
DOF2
--------->
DOF2
<xxxxxxxxxxxxxxxx
smallRNA(i)
---------->
DOF2
--------
ggtaaagggagcaacatctcgaaataagataatgggccaagcttcgaggaatccacaaaacaaataaaaacattcagagaaagactttaaagtattaaag
15158600
<-------
TEIL
-->
DOF2
<-------
TEIL
----------->
GT1
<-------
TEIL
<-----
ttgagaatcaaaacagatacattccagaaaattaattgtaccagtgatcaataaatataaatcatattgtataaatatggggttcacaagtacataaggg
15158700
<-------
TEIL
<----------
DOF2
-----
ID1
<-----------
GT1
<-----------
GT1
<-----------
GT1
acaaatgcattctaatttacaaggctaatactatgttattttctattcttacttatatttactcgtaactttgcttatcgaatatatattatattttgat
15158800
<----------
DOF2
<-----------
GT1
<----------
DOF2
--------------->
AtSPL8
<-----------
GT1
------->
TEIL
<----------
<----------
DOF2
------>
ZmHOX2a(1)
<---------------
AtSPL8
tttaagtacttttgcttatcgaatatataaataaatatttgaatgtgccaatcctatatttacgcatgagtaaggtgtactttttacacttttatcccat
15158900
<-----------
TGA1
<-----------
HVH21
--------->
TGA1a
--------->
O2
<---------
O2
=============================
bZIP_DOF
<---------
TGA1a
=============================
bZIP_DOF
----------->
STF1
<-----------
STF1
----------->
TGA1
----------->
GT1
----------->
HVH21
----------->
STF1
------------>
CBF
<----------
DOF2
-
GT1
----------->
TGA1
<------------
CBF
>>>>>>>>>>
HY5
<-----------
GT1
<----------
DOF2
ttacttaatgacgttacttgtagtcattgtccaatcagtgacgtcatagataattttccttttgtttatcttttaaactgttatgactgagtgaaggaaa
15159000
<---------------
AGL15
--------------->
AGL15
----------------->
AGL2
<-----------
RAV1(2)
<-----------------
AGL1
----------->
TGA1
-------->
P
*
TSS
<-----------------
AG
<------
NtERF2
------->
GAMYB
---------->
ID1
<-----------
GT1
<-----------------------
TaNAC69(2)
------>
ZmHOX2a(2)
ctattatcttcgtccct
atcaaatttttcagcaccgaaa
atggcaaacatcggcgtagtgacgacagcgactaacaaccaggtgatcttccgtaactacg
15159100
<-------
TEIL
------>
ZmHOX2a(2)
<-------
GAMYB
<------
ZmHOX2a(2)
---------->
DOF2
<---------
ABI4(2)
------->
TEIL
<-------
GAMYB
tgaatggattccctaaagaatccgacctctacattgcagcaagcaccgttgacttacgtgtacctcccggatccatggcggttctagtgaagaatctcta
15159200
------>
ZmHOX2a(1)
----------->
RAV1(2)
--------->
TGA1a
====================================
bZIP_DOF
<---------
ALFIN1
--------->
O2
---------->
DOF2
------>
ZmHOX2a(2)
===========================================
bZIP_DOF
<-----------------
AGL1
------>
ZmHOX2a(1)
==================
HOX2a_HOX2a
<----------
DOF2
<------
ZmHOX2a(2)
----------->
RAV1(2)
<---------
AtLEC2
----------->
GT1
cttatcttgcgatcctcatagccgcactcgcatggggaagcctgatccctcgtctcctgcttccatggctcatgctttcactatcggcaag
gtaaaaata
15159300
<-------
GAMYB
------->
TEIL
<-----------
RAV1(1)
---------->
DOF2
------->
TEIL
------->
TEIL
<-----------
RAV1(1)
--------->
ALFIN1
<-------
TEIL
ttcgaatctctagtgaacgtatttcagtatgattatttcattgtgttgtgtgtgttgtag
ccaatctctgggtttggagtggctaaagcaatagattcag
15159400
<--------
P
<----------
DOF2
<-------
GAMYB
<------
ZmHOX2a(1)
----------->
ARR10
<-----------
GT1
<-----------
GT1
<-----------
GT1
<--------
P
----------->
GT1
------>
ZmHOX2a(1)
<------
ggcacccaaattacaaaacaggagatttactttggggaagagttggttgggaagagtatagtgttattactccaactccttcttcacatttcaagattca
15159500
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AGI:
At5g38000.1
Description:
NADP-dependent oxidoreductase, putative. similar to NADP-dependent oxidoreductase, putative [Arabidopsis thaliana] (TAIR:AT5G37940.1); similar to NADP-dependent oxidoreductase, putative [Arabidopsis thaliana] (TAIR:AT5G37980.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN61471.1); contains InterPro domain NAD(P)-binding; (InterPro:IPR016040); contains InterPro domain GroES-like (InterPro:IPR011032); contains InterPro domain Alcohol dehydrogenase, zinc-binding (InterPro:IPR013149); contains InterPro domain Alcohol dehydrogenase superfamily, zinc-containing; (InterPro:IPR002085)
Range:
from: 15159018
to: 15160722
Orientation: Forward
Links:
TAIR
MIPS