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Chromosome 1
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Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved binding sites (0-100)
1 10 20 30 40 50 60 70 80 90 100
--
<-----------
GT1
--
<----------
DOF2
<--------
--------------->
AGL15
<----------
DOF2
--------------->
AtSPL8
tgtctacctcttttattaacgtttatttaattttgttttgaacaaaacttcttttattaactaagaactaaaaataatataatgccacgtactcctttga
1231400
-------->
ABF1
--------->
O2
============
============
==============================
bZIP_DOF
------>
NtERF2
===================================
bZIP_DOF
------->
ALFIN1
----------->
RAV1(1)
<---------
O2
--------->
HVH21
---------->
DOF2
---------->
DOF2
--------->
TGA1a
--
DOF2
<----------
DOF2
<-------
TEIL
---------->
DOF2
<---------
TGA1a
tgtgccgcgtagtccatcttctactctctgtttctttcagatttctaaaaagaagatacaacatattaaagaaaaggtcgagttttcaaacacgtgtctt
1231500
<----------
DOF2
<----------
DOF2
--------------->
AtSPL8
<-----------
GT1
<---------------
AtSPL3
<<<<<<<<<<
GT-3b
---------->
ID1
--------------->
AtSPL3
====================
bZIP_DOF
<------
NtERF2
=========
====================
bZIP_DOF
<--------
P
--------->
ALFIN1
------>
ZmHOX2a(2)
caacatatttttctttccaacttttcgtttaatattatcgagaatatcatggttgtttgagaatatcatggggtgtcgtacttattcttcatgatcttca
1231600
<----------
DOF2
------>
ZmHOX2a(1)
<----------
DOF2
<-----------
GT1
<-----------
HVH21
------->
TEIL
==============
HOX2a_HOX2a
<----------
DOF2
<-------
TEIL
ctatattatcctactttacgaccaatgtcactcactttacatagtgttttgattctctatctatgaatagagatacgatatgaactttgaaatcatcata
1231700
*
TSS
----------->
GT1
<-----------
TBP
aaaaactcatcgtaaaaaaaaaaaacactacactaagttttctcttatata
gaaacactcgttattctaatttgccactatatccattttttgcttattt
1231800
----------------->
AGL1
---------
<-----------------
AG
--------->
ALFIN1
<------
NtERF2
atttatttgaatttttttaaattatattaatctctggaaagattgcaagattgggtatgattgaatgtggaactgtgtatcgcaacaactcggcgtgttt
1231900
--------------
<---------
ALFIN1
<-------------
<-------
TEIL
--------->
PCF2
<--------
P
<--------
ATHB1
>
ALFIN1
<-----------
HVH21
<----------
ID1
-------->
HAHB4
cacgttcaagatatgtcccagtcccacctctataaataaaacgactaagaggtagcctccctaaacaacatacccatattataataattctcgttttaga
1232000
---------->
ID1
->
AGL15
<-----------
GT1
<-------
TEIL
--
AGL15
<-------
TEIL
------->
GAMYB
aattttttgtcttcaaatagtggagaa
atggattcaagattcaccgattccacaactaccttaag
gttcttctcaccaattcatcttcacatcatatagt
1232100
------->
TEIL
>>>>>>>>>
ARR1
<-
>>>>>>>>>
ARR2
---
----------------------->
TaNAC69(2)
--------->
AtLEC2
----------->
GT1
tgtatatgtgaatttgacatagatgtattcatattggtatgattgtatacgtatttgtttatgtgatgcatgcag
atgtaatggtaagagtgaaaatgag
1232200
----------->
GT1
<------
ZmHOX2a(1)
-----
ZmHOX2a(1)
<----------
DOF2
--------->
ALFIN1
-------->
GT1
----------->
GT1
<---------
AtLEC2
aggaaaaacggcgatgaagaaagaattagtaaatactcctttgtgagtccactgtgtatgcgtggaggagatggatacaatagttactccagcaattctc
1232300
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AGI:
At5g04370.1
Description:
NAMT1; S-adenosylmethionine-dependent methyltransferase. similar to BSMT1, S-adenosylmethionine-dependent methyltransferase [Arabidopsis thaliana] (TAIR:AT3G11480.1); similar to methyl transferase [Arabidopsis lyrata subsp. lyrata] (GB:AAP57211.1); contains InterPro domain SAM dependent carboxyl methyltransferase (InterPro:IPR005299)
Range:
from: 1231752
to: 1234148
Orientation: Forward
Links:
TAIR
MIPS