Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved binding sites (0-100)   1        10        20        30        40        50        60        70        80        90        100                                                                         ================HOX2a_HOX2a                                                                       <------ZmHOX2a(2)                       <----------DOF2                       <-----------HVH21  ------>ZmHOX2a(1)   aaaattggccaagactacgagtttacttttggtgataacatttggcaaacgactagtttctcatgtcaaatggatcagggtcctaattttaagcatcacc  1221100    <-----------RAV1(1)      ---------->DOF2<-------TEIL                                            -   tagattttgtggcatatgagacttcgtggagcaaagctcttgaagcttcgtgtaagtggataggtagagaagatggaatctatttttctcaagatggagt  1221200                                                                                                  ===                                                                                                  ---                                                            ------>ZmHOX2a(1)                   <----                                       ---------->DOF2    ------>ZmHOX2a(2)                  <-------         ---------->DOF2      ===================================HOX2a_HOX2a                <-------GAMYB ----->ZmHOX2a(1)             ------>ZmHOX2a(1)       ----------->ARR10                 <----------DOF2   tcctcccaccaaaaagtaccaagatggagttcctcccaccaaaaagtaccaatgggatgatcctcattgaaaattagagttttatattatctttggttga  1221300                                                        ------->TEIL ===================HOX2a_HOX2a                     --------------->AtSPL8 --->ZmHOX2a(2)                                   ------>ZmHOX2a(2) -----AGP1                                      <---------AGP1 -P          ------>ZmHOX2a(1)          <----------DOF2<-----------GT1  ---------->DOF2      <-------   tctgaagaattggtcctcatatgaaaattagggttttatattctttggtggatctttgtacctcttattatgaataaagttatcgataaaattttcttta  1221400                                                          ---------->DOF2                                              ----------->TBP                                  <------ZmHOX2a(1)  <-------TEIL                          --------------->AGL15 ----------->TBP                        ----------->GT1 ---DOF2                  <----------DOF2----------->GT1----------->HVH21          ---------->DOF2   ataacaaacattccattgatatggatttctttgaaaggataagtagttatataaatacgtgaaagatataagaaatttgagggactaaagagcaaaaata  1221500                               *TSS                                                 -------->P                              ----------->RAV1(2)                           ----------->HVH21  <-----                   <-----------HVH21                                  ----------->HVH21    ----------   tagatattttgaagaacaaacggtcgaagaacatctgaaactatcatcaatcggagaagaagaagaatggcactgacactgacaccaacaagttccgttc  1221600                                                                            <------NtERF2                                                                        <-----------HVH21                                                                       --------->O2                                                                       <---------TGA1a                                                                       --------->TGA1a                                                                       <---------O2                                                                      <------NtERF2                                         ------>NtERF2               ------>NtERF2                                 <----------TaMYB80                 ----------->HVH21                                 <------ZmHOX2a(2)                 <------NtERF2                                <-----------ARR10                 ------>NtERF2<------NtERF2                            =============HOX2a_HOX2a             --------->ALFIN1 --TEIL                     ------>ZmHOX2a(1)                   <---------ABI4(1)  <-----------HVH21 ----->AtSPL3    <-----------HVH21------>ZmHOX2a(2)         ------>ZmHOX2a(2) ------>NtERF2   atcttctcagttccatatccgtcgcgcgtcctcggatcttcgccgctgattttaatcttcgatcgcggtggcgacgtcgtcggcctgttacgtcaatttc  1221700                                                                        <-----------HVH21                                                                       <-----------RAV1(1)                                                                     ------>ZmHOX2a(1)                                <----------DOF2             <----------DOF2                         <   taacttccgtctcagacttccttcgaaaacttcgcttcactgtctctgttcttcgtcttccgcttcatctcctatgtcgctcgaagtctccagtcccaat  1221800                                          <------ZmHOX2a(2)       <-----------GT1                 ------>ZmHOX2a(2)           <-----------GT1      <-----------GT1             <--------P                  <----------DOF2 -----------RAV1(2) <-----------GT1<-------TEIL <-----------GT1   <-----------GT1   tctcaggtttacccctcttaattttcgagctagaaggttgatcgatcatgttactggttttgctctttttaacgttttgtgtcaaaattttggtcagttt  1221900                                                                                    <----------DOF2                                                              <-----------RAV1(1)<-----------GT1           ------>ZmHOX2a(2)                     <---------AtLEC2             ----------->GT1    ----   cttgattgtttgatctattcaagagcgtattgggttacccaaggcgtgattgcatggaatgtggatgttggtgaagggtcttgttacttttacgcgagca  1222000  Previous    Next  AGI:  At5g04350.1    Description:  self-incompatibility protein-related. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G04347.1); similar to self-incompatibility [Papaver nudicaule] (GB:CAA06689.1); contains InterPro domain Plant self-incompatibility S1 (InterPro:IPR010264) Range:  from: 1220830    to: 1221270    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g04360.1    Description:  ATLDA/ATPU1 (PULLULANASE 1); alpha-amylase/ limit dextrinase. similar to ATISA3/ISA3 (ISOAMYLASE 3), alpha-amylase [Arabidopsis thaliana] (TAIR:AT4G09020.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO68873.1); similar to H0806H05.4 [Oryza sativa (indica cultivar-group)] (GB:CAC09471.2); similar to pullulanase [Spinacia oleracea] (GB:CAA58803.1); contains InterPro domain Glycoside hydrolase, family 13, N-terminal; (InterPro:IPR004193); contains InterPro domain Alpha-1,6-glucosidases, pullulanase-type; (InterPro:IPR011839); contains InterPro domain Immunoglobulin E-set (InterPro:IPR014756); contains InterPro domain Glycosyl hyd Range:  from: 1221531    to: 1228612    Orientation: Forward Links:  TAIR  MIPS