Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                     <---------ICU4                   --------->ATHB12                                                 ------->GAMYB                  <---------YAB1                                                    --------->TOE2(3)       <---------ICU4                                <----------DOF2                --------->YAB1  --------->ARR11(3)    --------->At4g35610       --------->ANAC58                 --------->MYB46(3)  <---------ARR11(3)--------->TOE2(3)             --------->ANAC58                -------->P --ZmHOX2a(1)  ------>MYB83                   --------->ANAC58                   --------->WOX13(1) ----->GT1     ------>MYB46(1)                --------->ANAC58                 <------ZmHOX2a(2)    - ->AGL15      ----------->RAV1(1)             --------->ANAC46        <---------KAN4(2)          ==== --AGL15    --------->MYB46(3)         ----------->RAV1(1) --------->AtLEC2   --------->AGP1     ----   ataatatcatcttcaccaacatcattagctcaagtttcagacaacaaaacgcaagctttctatgcaaatgcgaataaacagatcaaccaaaatttgcctc  13346300                                                                  --------->YAB1              --------->YAB1     --------->AtLEC2                 <---------AHL20(2) --------->DOF2  <---------GLK1(1)  ---------->DOF2               --------->AHL20(2) ==============================================MADS_MADS    ----------->GT1 ----------->AGL15             --------------->AGL15  <---------YAB1   tataaagagataacaatagaaatcagggctaatccatgaaaagaaaactctcaattctcatggagtaattaaaacaaaacaaatacaaaaacaaaccttg  13346400                                                        ------>ZmHOX2a(2)                                                       --------->GLK1(1)                                                       <------ZmHOX2a(2)                                                       <---------GLK1(1)                                                      <---------ARR11(3)                     <---------HSFB2a(2)              --------->ARR14(2)                   <------ZmHOX2a(2)                  --------->ARR11(3)                   --------->CCA1(2)                  <---------ARR14(2)                   =================================HOX2a_HOX2a                   ==============================HOX2a_HOX2a                  --------->ARR11(3)            <----------DOF2                  <---------ARR14(2)         ==================HOX2a_HOX2a                  <---------ARR11(3)      ------>ZmHOX2a(1)  --------->ANAC46                  --------->AGP1          ====================HOX2a_HOX2a                  --------->ARR14(2)      =====================HOX2a_HOX2a               ---------->ID1                 --------->GLK1(1) --------->ARR11(3) <---------AGP1               <---------AHL20(2)                 <---------GLK1(1) <---------ARR11(3)<---------CCA1(2)            <---------AHL20(2)          <----------DOF2    --------->ANAC58------>ZmHOX2a(1)                <---------DAG2      ---          <---------DAG2     --------->ANAC58=================HOX2a_HOX2a     <----------DOF2     <--   taaatgttcttacttttggagatccagagggaagaaatgtcttcctccttcttttagatctccacgaagataaatgagagcttttttatttgtcttcttc  13346500                                                                                                    -                                                                                                    -              ------------------------>ANAC81                                                       -         <---------MYB46(3)                                                                        <-        --------->ALFIN1                                                                      -------        <---------ANAC46                                                                      -------  <---------ARR14(2)                   ---------->DOF2              --------->DAG2       <---------At4g35610  --------->ARR14(2)               <------ZmHOX2a(1)               --------->DAG2        --------->At4g35610 ------>At4g35610          <------ZmHOX2a(1)                      ---------->DOF2      --------->ZAT18 -------At4g35610    ---------->DOF2  <------ZmHOX2a(1)    ------------------------>ANAC81 --------->DEAR3(1)   tgcagaaatggtgggagacgaagaaaagaggaatgaaggaggaaaggaagacgaagatgaagacgaagaaaagggaatgtaatgtatagttcgcagaccc  13346600                                        --------->LBD16      *TSS      ------->GAMYB  ---------->DOF2  --------->YAB1   ---------->DOF2            <---------AHL20(2)--------->TOE2(3) -------->TOE2(3)           <-----------TBP  <---------CCA1(2) -------->TOE1(3)--------->LBD16      --------->ATERF1(1) -------->YAB1  --------->ANAC46      <---------LBD16             ------>MYB83 --------ATHB12 --------->RAP2.6(2)   <------NtERF2            *TSS -->ANAC58     --------->MYB46(3)    --------->ZAT2<-----------GT1------>MYB46(1) -->ANAC58    <---------At5g28300   <---------ARR14(2)    --------->AHL20(2)                   <-----   aatcttaaagcccattaaccgcaaactgatatataaaggagccgggtctatcttaaccatttaaaaccaacttctaatttggaatcaaattgaaccgaat  13346700                                                                                          --------->DOF5.7(2)                                                                                         <-----------HVH21                                                                                         <----------DOF2                                                                                      --------->LBD16                                                                                     --------->DEAR3(1)                                                                                     ------->GAMYB                                                                                    --------->DEAR3(2)                                                                                    <------------AtMYB77                                                                                    --------->MYB46(3)                                                                                   --------->MYB52(1)                              <---------ANAC58    ----------->GT1              --------->ANAC46                           --------->DAG2   <---------HSFB2a(2)                --------->ANAC58    --                         ---------->DOF2--------->LBD16                        --------->ANAC58   ---                     <------ZmHOX2a(1) <---------ANAC58--------->ARR14(2)<---------ARR14(2)      <---                    ----------->GT1    <---------ANAC58<---------ARR14(2)--------->ARR14(2) <-------- ------ARR10  ---------->DOF2 <---------ANAC58 ---------->DOF2   <----------CDC5   -------->P    <---   cgaaccggttgaagttgaaagaaggagaaaaggcgttgtctccgtgcgagaaaggcaaatcggagacgatgagcgaaaccgaagcaaccggcgttaccga  13346800      ------>NtERF2                                            <---------MYB46(3)    <---------At4g35610                                        ----------->GT1    --------->At4g35610                                       --------->ALFIN1                <------ ------->ARR11(1)                                             <---------AtMYB61               ------- ------>ATHB12                                           ==============================HOX2a_HOX2a ------YAB1                                             ===============================HOX2a_HOX2a -DOF5.7(2)                              --------->ALFIN1------>ZmHOX2a(2)                  <------ZmHOX2a(1) ------ATHB12                     <---------At4g35610   <------ZmHOX2a(2)       <------ZmHOX2a(1)   tgattcggctccagcgattgagactgaaactgtttctgatgcgatggagcatacagcgatcggagtggttgaatcggtggaaggagccatagaaggagca  13346900            --------->ATHB12         <------MYB46(1)--------->SPL7         <---------ANAC58         ----------->GT1<---------ORA47(1)         <------MYB83 ----------->HVH21         <---------ANAC58<---------DEAR3(1)        --------->MYB111(2)        <---------DEAR3(1)        --------->MYB55(2)        <---------MYB46(3) --------->At5g28300       --------->ALFIN1--------->MYB52(1)             <---------ANAC58     <---------ANAC58 <---------SPL7                  <---------ANAC58     <---------ANAC58 ------->GAMYB        --------->ARR14(2) --------->CCA1(2)   <---------MYB52(2)    <---------ARR14(2)            --------->LBD16     -------- ---At4g35610        --------->MYB46(3)   <------ZmHOX2a(1)             <---------ANAC46     <------- -->At4g35610       <---------At4g35610 <---------TOE1(2)   <---------At4g35610    <-----------GT1   gagaaatgggtgggtgatttgcaacggacggtgaaggaatcgaaggataccgcaatgcgttctgctcgttccctccgtgaaaattctacctctcagttcc  13347000                                                 <---------ARR14(2)                                              <---------ANAC58                                              <---------ANAC58           --------->MYB46(2)      ------>MYB83  --------->GLK1(2)                              -----         <--------P                ------>MYB46(1)                                             <-----  <---------ZAT14                <---------MYB46(2)                               <---------GLK1(1)  --------->ZAT14      <----------DOF2   <---------ICU4                           --------->GLK1(1) ->ARR14(2)--------->MYB52(2)    --------->MYB46(3)                             <------ZmHOX2a(1) <-- --ARR14(2)----------->GT1      --------->ANAC46 --------->ARR14(2)          <---------LBD16   ------   gctctatacaggttagttaatctctcttttgttcaccaaacaatttttgcgaatcgagattgtttaccaaaaaacattttcaggatttcaaaccatggat  13347100                                <---------HSFC1(1)                                <---------HSFB2a(2)                                --------->HSFB2a(2)             --------------->AGL15            --------->ARR11(3)  --------->HSFC1(1)        <---------CCA1(1) ---->CCA1(2)            <---------YAB1                   <---------RVE1(1) ----ARR14(2)       --------->ANAC58                     <---------ARR11(3) -------AtMYB61     --------->ANAC58                     --------->ARR11(3)      --------->ANAC55(2) --->ARR14(2)   <---------ANAC55(2)      --------->At4g35610    <---------------AGL15  --------->ATHB12   atggtggaatttagtatctcgtaagctataatttctagaaatgagctcgattcagaacagatatttctccaattagcagttttatgtattgaatggtgct  13347200  Previous    Next  AGI:  At4g26400.1    Description:  zinc finger (C3HC4-type RING finger) family protein. similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G56340.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO22124.1); contains InterPro domain Zinc finger, RING/FYVE/PHD-type (InterPro:IPR013083); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) Range:  from: 13344817    to: 13346606    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g26410.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G45060.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO22126.1); contains InterPro domain Uncharacterised conserved protein UCP022280 (InterPro:IPR016803) Range:  from: 13346663    to: 13349025    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.