Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                         --------->CCA1(2)                          <---------ANAC58                                             <------ZmHOX2a(2)                          ----------->GT1                                             --------->ARR14(2)                          <---------ANAC58                                            --------->ARR11(3)                          <---------ANAC46                               --------->ARR11(3)                      xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)        ----------->GT1     <---------ARR11(3)                   --------------->AGL15                      ------->TEIL            <---------ARR14(2)                   <---------------AGL15                      --------->GLK1(2)       --------->AGP1                --------->ARR14(2)                    <------ZmHOX2a(1)  <---------ARR11(3)  <-------                <---------ARR14(2)           <---------ZAT14 <---------ARR14(2)  --------->STY1(2)            ------>ZmHOX2a(1)                <---------ZAT18 --------->ARR14(2)------>ZmHOX2a(1)    < ------->DOF2  ------>ZmHOX2a(1)             --------->ZAT18 --------->ARR11(3)===============HOX2a_HOX2a   taaagtctcttatcctcctatccacattgagtgaaacatgcctagagtgctcatgaggatgaagaacctggttaaaatctcctagcaagatccaaggtct  13332000                                                                                 ----------->RAV1(1)                        <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)                 <xxxxxxxxxxxxxxxxsmallRNA(s)                     --------->AtMYB61                                       <---------ARR14(2)                --------->At4g35610                                          --------->ARR14(2)                <---------HSFC1(2)                                         ---------->TaMYB80               --------->ANAC58  ------>ZmHOX2a(2)                       <------NtERF2               --------->ANAC58<---------ARR11(3)                       --------->RAP2.6(2)          --------->LBD16      --------->ARR11(3)                   --------->WRKY12        <---------LBD16 <xxxxxxxxxxxxxxxxsmallRNA(i)                --------->WRKY38(1)     ----------->HVH21---------->DOF2                         xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3) ---------->DOF2--------->HSFC1(2)                            xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                     --------->YAB1xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3) --ARR11(3)<---------------------WRI1   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)<----------TaMYB80 ---------AHL20(2) -------->P --------->ZAT14   <----------DOF2    <---------MYB52(1)      <xxxxxxxxx   attaaaagtgaccggagaagctaccaaagcagtgatctctctccataactcttttctcttatcatcttcgttggccgcatataccacagagataacaatc  13332100                                                                                             <xxxxxxx                                                                                             <-------                                                                                             <-------                                                                                             <-------                                                                 --------->TOE2(3)     ------->GAMYB                                                                 --------->TOE1(3)  xxxxxxxxxxxxxxxxx                                                                 --------->AtMYB61<xxxxxxxxxxxxxxxxxx                                                                xxxxxxxxxxxxxxxxxxx>smallRNA(se3)                                                               -------->P         <xxxxxxxxxxxxxxxxxx                                                     ----------->RAV1(1)          <xxxxxxxxxxxxxxxxxx                                             --------->ATHB12  xxxxxxxxxxxxxxxx>smallRNA(i)  <-------                                     --------->At4g35610      ------->GAMYB   <---------TCP15(1)                                     ----------->RAV1(2)     --------->MYB46(3)   <xxxxxxxxxxxxxxxxxx                                     ============================RAV----------->RAV1(1)<xxxxxxxxxxxxx                                   xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)      --------->PCF2 --------                         --------->ANAC46   <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) <xxxxxxxxxxxxxxxxxxx                         --------->ANAC58 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)  <xxxxxxxxxxxxxxxxxxx                         --------->ANAC58 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)  <xxxxxxxxxxxxxxxxxxx                        xxxxxxxxxxxxxxxx>smallRNA(s) <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)    --------                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3) <---------MYB111(2) <xxxxxxxxxxxxxxxxxxx                     ------->TEIL <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)      --------->TCP15(1)                    --------->ARR14(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)  <---------PCF2 <--------                    <---------GLK1(2)<---------At4g35610   --------->YAB1    <-----------HVH21      <                ---------->DOF2 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3) xxxxxxxxxxxxxxsmallRNA(i2)xxxxxxxxxxxxxxxx>smallRNA(s) --------->YAB1--------->MYB46(3)    xxxxxxxxx   caagtgcgagaattagggaaaagaacctcgcaagtgatcatctgcaacgatttggcaacaataacaacctcaacagatgggtcccataacacccatatct  13332200                                                                                     ------->PIF5                                                                                     <-------MYC4                                                                                     ------->MYC4                                                                                     <-------PIF5                                                                                     <-------MYC2                                                                                     <-------PIF4                                                                                     ------->PIF4                                                                                     <-------MYC3                                                                                     ------->MYC3                                                                                     ------->MYC2                                                                                    <---------ANAC58   <---------CCA1(2)                                                                --------->ANAC55(2)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)                                             <---------ANAC55(2)  xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)                                             <---------ANAC58 xxxxxxxxxxxxxxxsmallRNA(fl3)                                                       --------->TGA1a ----ARR10                                                                      <----------DOF2 --ARR11(3)                                  --------->ZAT2                     ==============bZIP_DOF --ARR11(1)                                  --------->At4g35610               <---------ANAC58 xxxxx>smallRNA(le3)                         <---------ZAT2                    <---------ANAC58 xxxxxsmallRNA(si3)                          <---------At4g35610            <--------P xxxxsmallRNA(fl3)                           <------NtERF2                  ==================MYC_MYB xxxxxsmallRNA(le3)                         ----------->RAV1(1)            xxxxxxxxxxxxxxxx>smallRNA(i) --ARR14(2)                               <xxxxxxxxxxxxxxxxsmallRNA(s)     ===================MYC_MYB xxxxsmallRNA(se3)                        <xxxxxxxxxxxxxxxxsmallRNA(i)     <---------ANAC58 xxxsmallRNA(s)                          --------->ANAC46                  <---------ANAC58         - ->ARR11(3)                          ------>MYB46(1)                       <-------GAMYB            < xxxsmallRNA(fl3)                    -------->P                          <---------AtMYB61          < xxxxsmallRNA(se3)         <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)        <---------MYB52(1)         -- xxxsmallRNA(le3)          xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)       =======================bZIP_DOF ->ARR14(2)                <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)        ------>ZmHOX2a(1)<---------ANAC58 xxxxsmallRNA(si3)       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)         <----------DOF2  <---------ANAC58 -CCA1(2)      --------->TOE2(3)   --------->AtMYB61                ---------->ID1  <---------TGA1a-- xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(si3)------>MYB83          <-----------GT1<---------MYB46(3)    ----- xxxxxxxxxxxxxx>smallRNA(le3)     --------->MYB46(3)   --------->YAB1xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(i2)   tccctaaatctgagaaaccatagttctcatcaaaaaaccaaccaggcagcagagcattaataaacttcttgtcctttggttgcttcacgtgcttctctat  13332300                                                                                                    <    ----------------->AGL3                                                                --------->AHL20(2)   ------>NtERF2                                                                    ----------->RAV1(1) ----->NtERF2                                                 ----------->GT1       *TSS  <---------AHL20(2) ---------RAP2.3(1)                              <---------YAB1----------->GT1 --------->KAN4(2)<---- ---------ATERF1(1)                           <---------MYB52(1)              <---------HSFB2a(1) <-- ------->ANAC58                        ---------->DOF2     <------ZmHOX2a(1)  --------->HSFB2a(1) --- ------->ANAC58         --------->TOE1(3)    <---------RAP2.6(3)            <------ZmHOX2a(1)   ----- ------>HVH21           --------->TOE2(3)------------>MYB.PH3(1)       --------->AtMYB61  <---------AHL20(1)   gacgcctccaaaaataggcctattgaccttaaaccattttttaaagccgttacgatgactaggaatgttaaaaccacaggacattccaacaaaaaatttg  13332400         --------->YAB1         <---------ICU4                                                          <---------ZAT14       <---------AHL20(2)                                                        --------->ZAT14 ---------ZAT14                --------->HSFB2a(2)                        --------->AtMYB61 -----------AtSPL8             <---------HSFB2a(2)                    <-------TEIL -------ZAT18  --------->TOE2(3)       --------->ARR11(3)           <---------GLK1(2)<----------DOF2 ------>ZAT14  --------->TOE1(3)       <---------ARR11(3)           --------->ARR14(2) ---------->AtSPL8         <----------DOF2       <-----------GT1    <---------ARR14(2)   tgtacacatattaatgaccttaaaccattctttatagaagagaccttgattttacttactcttgctccaagattcaccaaaactacactttctcaatact  13332500                                   >>>>>>>>>ARR1                                   <---------GLK1(2)                            ------>NtERF2                           --------->LBD16                     --------->HSFB2a(1)                     <---------HSFC1(2)                     <---------HSFB2a(1)                   <---------ARR11(3)                                      --------->bZIP60(2)                   --------->ARR11(3)         <------MYB46(1)              --------->ANAC58               ---------->DOF2     >>>>>>>>>ARR2                 <---------WOX13(1)           <---------ICU4 --------->HSFB2a(2) <------MYB83     --------->ATHB12        --------->TOE1(2)          <---------------AGL15  <---------YAB1 --------->WRKY18(1)        --------->ANAC46          --------------->AGL15  <---------TOE2(3)--------->WOX13(1)       --------->ANAC58          ===========================================================================================       <-----------GT1<----------DOF2        --------->MYB59<---------At4g35610      ------->TEIL   --------->AHL20(2)--------->HSFC1(2)    <---------MYB52(1) <---------YAB1----------->RAV1(1)   agtcattttatactcattaaagaactttcccgactaagattgtctgtttggtcaatctatttagatgattggattccacgacatatgtaccagcgagtga  13332600                                                                                             <-------                                                                                             <-------                                                                                             <-------                                                                                           ------>NtERF2                                        <---------YAB1                                  --------->At4g35610                   <---------MYB46(3)--------->ARR14(2)                             --------->ANAC58             ----------->RAV1(2)     <---------ARR14(2)                             --------->ANAC58  <---------------AGL15              <---------MYB52(1)        --------->YAB1    --------->At4g35610  <----------DOF2 <---------AtMYB61--------->LBD16             <---------ICU4    <---------ZAT2   ---  --------------->AGL15          <---------LBD16       <---------ZAT18           --------->ZAT2   <-- <-----------------AGL3     <---------AHL20(2)         --------->ZAT18           <---------At4g35610 =================MADS_MADS <-----------GT1  <---------TOE2(3)<---------ATHB12<--------P<---------At4g35610   tgctctttttttggtacctggtggttctatttacttccggttatgttaagaattttgtgaactaatcatgttttttttgggttagctcgcctctgccgtg  13332700                                                                                     <---------TOE2(3)      ----------->HVH21                                                              <---------TOE1(3) --ANAC58                                                                            --------->MYB59 --ANAC58                                                                      --------->AHL20(2)   - --ANAC46                                                                      <---------AHL20(2) <-- ------>HSFB2a(2)                                                          <---------TOE2(3)      <-- -------HSFB2a(2)     <---------ZAT6                                <-------TEIL<---------AHL20(2)---   ctcgaagtctgactggtttggctagagttactgaaacagagtttatttgctattgtttaaaatgtttaggctcatctaagattaatttaggttgaactaa  13332800                                   <---------YAB1                                         ------>ZmHOX2a(2)                                   --------->ICU4                                        <------ZmHOX2a(2)                                 -------->HAHB4                                         <---------ARR14(3)                                 --------->YAB1                                         --------->ARR11(3)                                 <---------ICU4                                         --------->ARR14(2)               <---------TOE2(3)--------->ICU4                                          <---------ARR11(3)    ------>ZmHOX2a(1)           <---------ATHB51                                        --------->AGP1    --------->LBD16           --------->YAB1                                            --------->ARR14(3)   <---------LBD16           --------->AHL20(2)                  ----------->GT1        <---------ARR14(2)  ----------->RAV1(2)        <---------AHL20(2)         <--------P                     --------->GLK1(1) -------->ARR11(3)          <---------AHL20(2)        <------MYB83                     <---------GLK1(1) -------AHL20(1)            --------->AHL20(2)        <------MYB46(1)             <------NtERF2 <---- -------ARR11(3)            <---------AHL20(1)       --------->MYB111(1)         <xxxxxxxxxxxxxxxxsmallRNA(le3) ------>ARR11(3)            --------->AHL20(1)       <---------AtMYB61           <xxxxxxxxxxxxxxxxxxx   tatatcctggagagtttatggatgaactaatttaataatgagtatcaaatatgagttggtagataaacagtagaaaactaaggcctcagagatcttggtg  13332900  Previous    Next  AGI:  At4g26360.1    Description:  transposable element gene. non-LTR retrotransposon family (LINE), has a 4.9e-40 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus) Range:  from: 13328772    to: 13332384    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g26365.1    Description:  snoRNA. snoRNA Range:  from: 13332843    to: 13332920    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.