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Chromosome 1
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Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<------
NtERF2
--------->
RAP2.6(2)
--------->
At4g35610
<---------
At4g35610
--------->
ZAT2
--------->
AtLEC2
--------->
At4g35610
------------>
CBF
--------->
ZAT2
------>
ZmHOX2a(2)
<---------
At4g35610
<---------
GLK1(1)
--------->
At4g35610
--------->
GLK1(1)
----------->
RAV1(1)
------------>
CBF
<---------
ARR11(3)
--------->
At4g35610
<------
ZmHOX2a(2)
--------->
ARR11(3)
<---------
At4g35610
<---------
ZAT2
==============================
HOX2a_HOX2a
<---------
ZAT2
<<<<<<<
ZML2
----------->
RAV1(2)
--------->
ARR14(2)
--------->
ZAT2
--------->
HSFB2a(2)
<---------
ANAC46
------->
TEIL
---------->
CDC5
<---------
MYB111(1)
------>
MYB83
<---------
ARR14(2)
-------->
P
<---------
At4g35610
--------->
ANAC58
------>
MYB46(1)
<---------
AGP1
----------->
RAV1(1)
<---------
ZAT2
<---------
HSFB2a(2)
<----
--------->
RAV1(2)
<---------
WOX13(1)
<---------
ALFIN1
----------->
RAV1(1)
--------->
ANAC58
--------
GT1
<---------
ATHB12
------>
ZmHOX2a(1)
--------->
TOE2(3)
--------->
MYB46(3)
<------
ZmHOX2a(1)
aacctgcctggatcaatggttcttgatggatctccttcaatgcaacacttacctcagcagcagcagcggcaactactagaacagcaagcaggacaaggtt
13028400
-------
<-----------
GT1
--------->
ARR11(3)
<---------
GLK1(2)
--------->
ARR14(2)
<---------
ARR11(3)
<---------
ARR14(2)
--------->
At4g35610
<---------
At4g35610
<---------
MYB52(1)
----------->
RAV1(1)
----------->
GT1
--------->
At4g35610
-
------------>
MYB.PH3(1)
<---------
At4g35610
=
<---------
ATHB12
<---------
TOE2(3)
<-----------
RAV1(1)
<---------
At5g28300
----------------->
AGL1
--------->
ANAC58
--------->
ANAC58
<---------
ZAT2
<------
---
TEIL
----------->
GT1
--------->
ANAC58
--------->
ANAC58
--------->
ZAT2
<---------
At4g35610
cagttccaatgagggaaaacagttattcccatgtagataagaaactgagattagaagtgaagcaagaagacttgttgcagcagcagattttacagcagtt
13028500
<---------
GLK1(1)
--------->
GLK1(1)
--------->
ANAC46
<---------
LBD16
--------->
MYB52(1)
<----------
DOF2
--------->
ANAC58
<-------
TEIL
<---------
ZAT2
--------->
ANAC58
<---------
At4g35610
<---------
At4g35610
--------->
PCF2
<---------
ARR14(2)
--------->
ZAT2
<------
ZmHOX2a(1)
--------->
LBD16
<---------
At4g35610
<-------
<-----------
RAV1(2)
--------->
ARR14(2)
<---------
ANAC58
<---------
GLK1(2)
------>
NtERF2
--------->
ANAC58
--------->
ANAC58
<---------
At4g35610
--------->
DEAR3(1)
--------->
ANAC58
--------->
ANAC58
----------->
RAV1(1)
---------
-->
At4g35610
<---------
ALFIN1
<---------
At4g35610
--------->
At4g35610
<---------
At4g35610
----->
ZmHOX2a(2)
--------->
O2
--------->
At4g35610
--------->
At4g35610
--------->
REM1(1)
---------
================
HOX2a_HOX2a
<---------
LBD16
<---------
ANAC58
--------->
ALFIN1
--------->
At4g35610
---
At4g35610
----------->
HVH21
--------->
At4g35610
----------->
RAV1(1)
--------->
At4g35610
<-----
gatccagcgccaggaccccacgggaagaaatccgcagatgcaagctttgcttcagcagcagagagtgaggcaacatcagcagatgcttcaatccatgtca
13028600
<---------
ZAT14
<---------
At4g35610
<---------
GLK1(1)
------------>
AtMYB77
----------->
RAV1(1)
--------->
ZAT2
------>
MYB83
<---------
ZAT2
------>
MYB46(1)
----------->
RAV1(2)
--------->
MYB52(1)
--------->
At4g35610
--------->
MYB46(3)
================================
RAV
--------->
GLK1(1)
<---------
At4g35610
--------->
ANAC58
<-----------
RAV1(2)
--------->
ANAC58
--------->
At4g35610
<---------
MYB52(2)
<---------
At4g35610
--------->
ANAC58
------>
ZmHOX2a(1)
----
HVH21
================
RAV
--------->
ANAC46
<-------
TEIL
>
ANAC46
----------->
RAV1(1)
--------->
ANAC58
------->
TEIL
>
bZIP60(2)
<---------
At4g35610
----------->
RAV1(1)
------>
ZmHOX2a(1)
<
------
GT1
--------->
At4g35610
<---------
At5g28300
<---------
GLK1(2)
--------->
ICU4
ccctctcagagactccaacttcagaaacagcagcagctgagacagcagttacagcaacaaggaacccaacagatttctcctaatgtacgtccttatgaag
13028700
<---------
LBD16
<---------
ZAT2
--------->
ZAT2
--------->
ZAT2
<---------
ZAT2
--------->
At4g35610
<---------
ZAT14
------->
GAMYB
--------->
ZAT14
<---------
At4g35610
<---------
DEAR3(1)
--------->
At4g35610
<------
NtERF2
<---------
At4g35610
<---------
At4g35610
<---------
ANAC58
<---------
CCA1(2)
<---------
At4g35610
--------->
TOE2(2)
<---------
RAP2.6(2)
------->
TEIL
--------->
At4g35610
--------->
ANAC58
<---------
ANAC58
--------------->
AtSPL8
--------->
MYB46(3)
-------->
P
<---------
ANAC46
<---------------
AtSPL8
--------->
MYB52(1)
--------->
ZAT6
<--------
------
NtERF2
<---------
TOE2(3)
----------->
RAV1(2)
--------->
ANAC58
------->
TEIL
<---------
AHL20(2)
ttggcgtctgtgctcggaaattgatgatgtacttgtatcatctgcagcaacggcctgctgtaagctaatactaacctatggacttctagttattttatca
13028800
--------->
ATHB12
<---------------
AGL15
--------------->
AGL15
*
TSS
<---------
ANAC55(2)
<
<---------
ATHB12
<------
ZmHOX2a(1)
<-----------
RAV1(1)
--------
--------->
ARR11(3)
<----------
DOF2
--------->
ANAC55(2)
------->
PIF5
---
GT1
<---------
ARR11(3)
<---------
DAG2
<------------
CBF
<------
ZmHOX2a(1)
<-------
PIF5
catctattcaagttctcccatcactgataccttttctgtag
gaaaattgcattacttattggaggaaatttgtggcagaatactttcacctcgtgcaaag
13028900
<-----------
HVH21
<---------
MYB52(1)
--------->
LBD16
<---------
LBD16
--------->
ARR14(2)
<---------
ARR14(2)
---------->
DOF2
<---------
At4g35610
--------->
ANAC58
--------->
ATERF1(1)
--------->
ZAT6
<------
NtERF2
<-----------
GT1
<---------
ZAT18
--------->
ZAT2
<-----------
HVH21
--------->
ALFIN1
<---------
ATERF1(1)
<---------
ANAC58
--------->
ALFIN1
--------->
ANAC46
<---------
YAB1
--------->
ANAC58
<---------
ALFIN1
--------->
ANAC58
<---------
ARR14(2)
--------->
ALFIN1
--------->
SPL7
<------
NtERF2
--------->
ANAC58
--------->
ARR14(2)
---------
AtMYB61
<---------
SPL7
--------->
ZAT18
<---------
ANAC58
--------->
At4g35610
<---------
ANAC46
-->
DOF2
<---------
ANAC58
<-----------
RAV1(1)
<---------
ANAC58
<---------
ZAT2
<----------
DOF2
<---
cagaggttgtgcttgtcacagtacgaaagtgttgggcaccatgcccttggc
atgtttccacaggcagctccg
gtcagtatcgtctttgctctgtgtgttt
13029000
--------->
ANAC46
<----------
DOF2
<---------
ARR11(3)
<---------
ARR11(3)
--------->
ARR11(3)
<---------
ARR14(2)
--------->
GLK1(1)
--------->
ARR11(3)
--------->
ZAT14
<---------
GLK1(1)
<---------
GLK1(1)
----------->
RAV1(2)
<---------
ZAT14
--------->
YAB1
--------->
GLK1(1)
<---------
ALFIN1
--------->
ANAC46
<---------
YAB1
<---------
ARR14(1)
--------->
ANAC46
<-----------
GT1
<--
<---------
MYB52(1)
<---------
CCA1(2)
<-----------
GT1
------->
TEIL
<----
<-------
GAMYB
<---------
ZAT14
<---------
ARR11(1)
<----------
DOF2
<---------
YAB1
<-----
------
AtMYB61
--------->
ZAT14
--------->
ARR14(2)
<---------
ICU4
----------------------->
TaNAC69(2)
tggtctgttatgatatctgtgttctgcatcagcatatctttagctatacacatctttactccacctgtactatttatgaatttcacttcactgatttttt
13029100
<------
NtERF2
--------->
LBD16
<---------
RAP2.3(1)
<-----------
RAV1(1)
--------->
ANAC46
<---------
GLK1(1)
<---------
RAP2.6(2)
--------->
GLK1(1)
<---------
RAP2.3(2)
--------->
CCA1(2)
--------->
RAP2.6(3)
----------->
GT1
--------->
ARR14(2)
<---------
LBD16
<------
MYB46(1)
<---------
ARR14(2)
<----------
DOF2
<------
MYB83
<---------------
AGL15
<---------
ICU4
--------->
MYB59
<-------
TEIL
<---------
YAB1
------>
ZmHOX2a(2)
--------->
ARR14(2)
<XXXXXXXXXXXXXXXXXXXX
MIR417
<------
ZmHOX2a(1)
<---------
YAB1
<---------
ARR14(2)
-------
TOE2(3)
--------------->
AGL15
<---------
ARR11(3)
--------->
HSFB2a(2)
-
-----
AHL20(2)
<-----------------
AGL2
--------->
ARR11(3)
<---------
HSFB2a(2)
--------->
MYB52(2)
----
AHL20(2)
<---------
YAB1
=========================
HOX2a_HOX2a
---------->
DOF2
--------->
ARR11(3)
aatgaataagttcatcatcttctcattctgtttatag
gatatgtggcagtgtgatctttgcggcactaagtctggaaagggatttg
gtaagatagttgca
13029200
<-------
MYC3
------->
MYC3
------->
MYC2
<---------
ANAC46
<-------
MYC2
<---------
ANAC58
--------->
ZAT2
<---------
ANAC58
<---------
At4g35610
<-----------
GT1
<---------
ANAC58
--------->
At4g35610
<---------
ANAC58
<---------
ANAC58
<---------
At4g35610
<----------
DOF2
--
<---------
ANAC58
<----------
DOF2
---------->
DOF2
<---------
WOX13(1)
--------
-------->
ARR11(3)
--------------->
AtSPL8
<---------
ATHB12
<---------
YAB1
<---------
YAB1
<--------
aatttcttgtttttacttgtatttctgtgcctttacttgagcacaatgaagcagcttacacatgctaattgctctctctttattgtttaaaactttgata
13029300
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AGI:
At4g25515.1
Description:
SLK3 (SEUSS-LIKE 3); transcription regulator. similar to SLK1 (SEUSS-LIKE 1), transcription regulator [Arabidopsis thaliana] (TAIR:AT4G25520.1); similar to SEU1 protein [Antirrhinum majus] (GB:CAF18247.1)
Range:
from: 13028842
to: 13031808
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.