Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved binding sites (0-100)   1        10        20        30        40        50        60        70        80        90        100                                                                                                 xxxxxx                         ------>ZmHOX2a(2)                                <---------ALFIN1    xxxxxxx      <-------TEIL--------->ALFIN1                                      -------->P          xxxxxxxxx  ------->TEIL  xxxxxxxxxxxxxxxx>smallRNA(i)       <xxxxxxxxxxxxxxxxsmallRNA(i)    ------>ZmHOX2a(1)   attgaacgttcggcgtatgagtggtgatcggatagctagtgttcgtaggctccatgctcgcgcatcgaactacctaccacctatccttctcagttaattc  14208300                                        --------------->AtSPL8                                   <xxxxxxxxxxxxxxxxsmallRNA(i)                                  <xxxxxxxxxxxxxxxxsmallRNA(s)                                 <xxxxxxxxxxxxxxxxsmallRNA(i)                               ------>NtERF2                      <xxxxxxxxxxxxxxxxsmallRNA(i)                                                 --              xxxxxxxxxxxxxxxx>smallRNA(s)  ------->TEIL                                        <xxxx        <-----------GT1       xxxxxxxxxxxxxxxx>smallRNA(i)                                  <xxxxxxxx xxxxxxxxxx>smallRNA(i)     xxxxxxxxxxxxxxxx>smallRNA(s)                                   <------NtERF2 xxxxxxxxx>smallRNA(i)----------->ARR10 --------------->AtSPL3                            ------>NtERF2 xxxxxxx>smallRNA(i)  <xxxxxxxxxxxxxxxxsmallRNA(s)                                      <------NtERF2   acgggcgatgttacgctcgatgatgagttccggggcctgtgtttcgtacctaatttgaaggaattgttgagttcggtttacacccatgcccgcggcttct  14208400                                      <-----------GT1                                <-------GAMYB                      <xxxxxxxxxxxxxxxxsmallRNA(i)                 <---------PCF2------>NtERF2                 xxxxxxxxxxxxxxxx>smallRNA(i)               xxxxxxxxxxxxxxxx>smallRNA(i)   <-----------HVH21 ---->ZmHOX2a(1)<xxxxxxxxxxxxxxxxsmallRNA(i)  <-----------TGA1                              <--------P xxxxxxxxxxxxsmallRNA(i)  xxxxxxxxxxxxxxxx>smallRNA(s)     ---------->ID1                  <-------GAMYB xxxxxxxxsmallRNA(i) <xxxxxxxxxxxxxxxxsmallRNA(i)        <-----------RAV1(1)          --------->ALFIN1   ccttcgtggggaagtcgtgggcacaaacatcggcgcttgttcacctctcgtcatcgcatttgttgccttgctcgcattggtgaatgagttgcgggttgat  14208500                                                                                                  ---                                                        xxxxxxxxxxxxxxxx>smallRNA(i)  <xxxxxxxxxxxxxx                                                    xxxxxxxxxxxxxxxx>smallRNA(s)     <xxxxxxxxxxxxxxx                                                  xxxxxxxxxxxxxxxx>smallRNA(s)  <xxxxxxxxxxxxxxxxsmallRNA(i)                xxxxxxxxxxxxxxxx>smallRNA(i)      ---------->DOF2             ----------->HVH21------             xxxxxxxxxxxxxxxx>smallRNA(i)       >>>>>>>>>E2Fc               <xxxxxxxxxxxxxxxxsmallRNA(i)             <xxxxxxxxxxxxxxxxsmallRNA(i)       >>>>>>>>>E2Fd            ---------->DOF2     <xxxxxxx            xxxxxxxxxxxxxxxx>smallRNA(i)       ------>NtERF2          <xxxxxxxxxxxxxxxxsmallRNA(i)<--           ---------->DOF2           xxxxxxxxxxxxxxxx>smallRNA(s)------>ZmHOX2a(1) <-----------HVH21   atctcggatgcggaaaagttgtcgacggtgactcgaagtgattcagtcccgccaaagctcatccgtccttcgggcaaaagatgacggtcaagacctcgtc  14208600                                                                 <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                xxxxxxxxxxxxxxxx>smallRNA(s)                                                               xxxxxxxxxxxxxxxx>smallRNA(s)                                                               xxxxxxxxxxxxxxxx>smallRNA(i)                                                            xxxxxxxxxxxxxxxx>smallRNA(i)                                                            -------->P                                                       ------->TEIL                                 x                                             ----------->HVH21 *TSS                                 x                                            <xxxxxxxxxxxxxxxxsmallRNA(i)                        xxxxx                                            <xxxxxxxxxxxxxxxxsmallRNA(s)                      xxxxxxx                                         xxxxxxxxxxxxxxxx>smallRNA(s)                         xxxxxxx                                       xxxxxxxxxxxxxxxx>smallRNA(s)  <xxxxxxxxxxxxxxxxsmallRNA(i)  xx                                      <------------CBFxxxxxxxxxxxxxxxx>smallRNA(i)           --------      <----------DOF2             <------NtERF2   xxxxxxxxxxxxxxxx>smallRNA(s)               xxxxxxxx --->ZmHOX2a(1)              --------->ALFIN1xxxxxxxxxxxxxxxx>smallRNA(i)------>ZmHOX2a(1)   xxxxxxxx xxsmallRNA(i)               ----------->HVH21   ------>ZmHOX2a(2)<--------P                 -------- xsmallRNA(i)              <-----------RAV1(1)   ===============================HOX2a_HOX2a xxxxxxxxx ---->ID1  <------------CBF--------->ALFIN1xxxxxxxxxxxxxxxx>smallRNA(i)  xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxxxxxsmallRNA(s)    <------ZmHOX2a(1)xxxxxxxxxxxxxxxx>smallRNA(i) ------>ZmHOX2a(2) xxxxxxxxxxxx --------DOF2            ===============================HOX2a_HOX2a <xxxxxxxxxxxxxxxxsmallRNA(i)xxxxx   ctttctctctttccattgcgtttgagaggatgtggcggggaattgccgtgatcgatgaatgctacctggttgatcctgccagtagtcatatgcttgtctc  14208700                                                   xxxxxxxxxxxxxxxx>smallRNA(s)                                                   <xxxxxxxxxxxxxxxxsmallRNA(s)                                                   xxxxxxxxxxxxxxxx>smallRNA(i)                                                  xxxxxxxxxxxxxxxx>smallRNA(s)                                                 <xxxxxxxxxxxxxxxxsmallRNA(i)                                               xxxxxxxxxxxxxxxx>smallRNA(s)                                              xxxxxxxxxxxxxxxx>smallRNA(s)                                              xxxxxxxxxxxxxxxx>smallRNA(i)                                             xxxxxxxxxxxxxxxx>smallRNA(s)                                            xxxxxxxxxxxxxxxx>smallRNA(i)                                            xxxxxxxxxxxxxxxx>smallRNA(s)                                           xxxxxxxxxxxxxxxx>smallRNA(s)                                           xxxxxxxxxxxxxxxx>smallRNA(i)                                          xxxxxxxxxxxxxxxx>smallRNA(s)                                         xxxxxxxxxxxxxxxx>smallRNA(i)                                         xxxxxxxxxxxxxxxx>smallRNA(s)                                        xxxxxxxxxxxxxxxx>smallRNA(s)                                        xxxxxxxxxxxxxxxx>smallRNA(i)                                       xxxxxxxxxxxxxxxx>smallRNA(s)                                       ----------->GT1                                       xxxxxxxxxxxxxxxx>smallRNA(i)                                      xxxxxxxxxxxxxxxx>smallRNA(i)   xxxxxxxxxxxxxxxx>smallRNA(s)       xxxxxxxxxxxxxxxx>smallRNA(s)   xxxxxxxxxxxxxxxx>smallRNA(i)      xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxxxxxxxxxxx>smallRNA(i)         xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxxxxx>smallRNA(s)        xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxx>smallRNA(s)           xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxx>smallRNA(i)           <xxxxxxxxxxxxxxxxsmallRNA(i) xxxxxxxxx>smallRNA(s)         xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxxxxxxxxxx>smallRNA(s)   xxxxxxxxxxxxxxxx>smallRNA(i) -->ARF1     ------->TEIL     xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxx>smallRNA(i)        <xxxxxxxxxxxxxxxxsmallRNA(i) xxxxxxxx>smallRNA(s)       xxxxxxxxxxxxxxxx>smallRNA(s)              xxxxxxxxxxxxxxxx>smallRNA(i) -->ID1   --------->AtLEC2 <xxxxxxxxxxxxxxxxsmallRNA(s)       ---------->DOF2 xxxxxxx>smallRNA(i)  <xxxxxxxxxxxxxxxxsmallRNA(i)<xxxxxxxxxxxxxxxxsmallRNA(i) xxxx>smallRNA(i)     xxxxxxxxxxxxxxxx>smallRNA(i)<xxxxxxxxxxxxxxxxsmallRNA(s) xxxxxxxxxxx>smallRNA(i) xxxxxxxxxxxxxxxx>smallRNA(s)   <xxxxxxxxxxxxxxxxsmallRNA(s) ----------->GT1   aaagattaagccatgcatgtgtaagtatgaacgaattcagactgtgaaactgcgaatggctcattaaatcagttatagtttgtttgatggtaactactac  14208800                                                                                                    x                                                                                                   <x                                                                                                 <xxx                                                                                                 <xxx                                                                                                 xxxx                                                                                                xxxxx                                                                                                <----                                                                                               xxxxxx                                                                                               xxxxxx                                                                                              xxxxxxx                                                                                              xxxxxxx                                                                                             xxxxxxxx                                                                                             xxxxxxxx                                                                                            xxxxxxxxx                                                                                            xxxxxxxxx                                                                                            ------>NtERF2                                                                                           xxxxxxxxxx                                                                                         xxxxxxxxxxxx                                                                                      ------>NtERF2<x                                                                                    <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                                   ------>NtERF2xxxxx                                                                                  <xxxxxxxxxxxxxxxxsmallRNA(i)                                                                                 <xxxxxxxxxxxxxxxxsmallRNA(s)                                                                                xxxxxxxxxxxxxxxx>smallRNA(s)                                                                               xxxxxxxxxxxxxxxx>smallRNA(s)                                                                               <xxxxxxxxxxxxxxxxsmallRNA(s)                                              xxxxxxxxxxxxxxxx>smallRNA(s)    xxxxxxxxxxxxxxxx>smallRNA(s)                                             xxxxxxxxxxxxxxxx>smallRNA(i)     xxxxxxxxxxxxxxxx>smallRNA(i)                                             xxxxxxxxxxxxxxxx>smallRNA(s)    xxxxxxxxxxxxxxxx>smallRNA(s)                                            xxxxxxxxxxxxxxxx>smallRNA(s)     xxxxxxxxxxxxxxxx>smallRNA(i)                                            <xxxxxxxxxxxxxxxxsmallRNA(s)    xxxxxxxxxxxxxxxx>smallRNA(s)                                           ------>NtERF2                   xxxxxxxxxxxxxxxx>smallRNA(i)                                         xxxxxxxxxxxxxxxx>smallRNA(s)      xxxxxxxxxxxxxxxx>smallRNA(s)                                       xxxxxxxxxxxxxxxx>smallRNA(s)       xxxxxxxxxxxxxxxx>smallRNA(s)                                      <xxxxxxxxxxxxxxxxsmallRNA(s)        xxxxxxxxxxxxxxxx>smallRNA(i)                                    ------->GAMYB                      xxxxxxxxxxxxxxxx>smallRNA(s)xx                                 ----------->RAV1(1)   ----------->HVH21 ---------->DOF2 xxxxxxxxxxxx                              <xxxxxxxxxxxxxxxxsmallRNA(i)            xxxxxxxxxxxxxxxx>smallRNA(s)xxx                           <-----------------------TaNAC69(2) xxxxxxxxxxxxxxxx>smallRNA(i)---------->CDC5      ------->GAMYB   xxxxxxxxxxxxxxxx>smallRNA(s)   xxxxxxxxxxxxxxxx>smallRNA(s)xxxxxxxxxxxxxxxx>smallRNA(s)   tcggataaccgtagtaattctagagctaatacgtgcaacaaaccccgacttatggaagggacgcatttattagataaaaggtcgacgcgggctctgcccg  14208900                                        xxxxxxxxxxxxxxxx>smallRNA(s)                                       xxxxxxxxxxxxxxxx>smallRNA(s)                                     xxxxxxxxxxxxxxxx>smallRNA(i)                                     xxxxxxxxxxxxxxxx>smallRNA(s)                                   xxxxxxxxxxxxxxxx>smallRNA(i)                   xxxxxxxxxxxxxxxx>smallRNA(i)                  xxxxxxxxxxxxxxxx>smallRNA(s)                  xxxxxxxxxxxxxxxx>smallRNA(i)               xxxxxxxxxxxxxxxx>smallRNA(s)               xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxxxxxxxxxxxx>smallRNA(s)              xxxxxxxxxxxxxxxx>smallRNA(s) <xxxxxxxxxxxxxxxxsmallRNA(i)           xxxxxxxxxxxxxxxx>smallRNA(s)xxxxxxxxxxxxxxxx>smallRNA(i)          <-------TEIL            xxxxxxxxxxxxxxxx>smallRNA(i)       xxxxxxxxxxxxxxxx>smallRNA(i)xxxxxxxxxxxxxxxx>smallRNA(s)      xxxxxxxxxxxxxxxx>smallRNA(s)xxxxxxxxxxxxxxxx>smallRNA(s)   xxxxxxxxxxxxxxxx>smallRNA(s)   <xxxxxxxxxxxxxxxxsmallRNA(i)  xxxxxxxxxxxxxxxx>smallRNA(i)   xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxxxxxxxxxxx>smallRNA(i)     <xxxxxxxxxxxxxxxxsmallRNA(s) xxxxxxxxxxxxxxxsmallRNA(i)      xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxxxsmallRNA(i)      <xxxxxxxxxxxxxxxxsmallRNA(s) xxxxxxxxxxxxxsmallRNA(s)      <---------AtLEC2 xxxxxxxxxxxx>smallRNA(s)     xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxx>smallRNA(s)     ------>ZmHOX2a(2)   ------>NtERF2 ---GAMYB xxxxxxxxxxxxxxxx>smallRNA(s)xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxx>smallRNA(s)   xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxx>smallRNA(i)  xxxxxxxxxxxxxxxx>smallRNA(s)                                             xxx xxxxxxxxx>smallRNA(s) xxxxxxxxxxxxxxxx>smallRNA(s)                                              xxxx xxxxxxxxx>smallRNA(i) xxxxxxxxxxxxxxxx>smallRNA(i)                                           xxxxxxx xxxxxxxx>smallRNA(s) xxxxxxxxxxxxxxxx>smallRNA(s)                                          <------ZmHOX2a(1) xxxxxxxx>smallRNA(i) xxxxxxxxxxxxxxxx>smallRNA(i)<------NtERF2                             xxxxxxxxx xxxxxxx>smallRNA(i) xxxxxxxxxxxxxxxx>smallRNA(s)xxxxxxxxxxxxxxxx>smallRNA(s)            <--------P x xxxxxxx>smallRNA(s)xxxxxxxxxxxxxxxx>smallRNA(s)xxxxxxxxxxxxxxxx>smallRNA(i)           xxxxxxxxxxxxxx xxxxxx>smallRNA(s)xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxxxxxx>smallRNA(s)        xxxxxxxxxxxxxxxx>smallRNA(s) xxxx>smallRNA(i)xxxxxxxxxxxxxxxx>smallRNA(s)   ----------->HVH21                 xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxxxxxsmallRNA(s)  xxxxxxxxxxxxxxxx>smallRNA(s)                       <----------DOF2  xxxx xxxxxxxxxxx>smallRNA(i) xxxxxxxxxxxxxxxx>smallRNA(i)                           xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxxxxxxxxxx>smallRNA(i) <------ZmHOX2a(2)  <------NtERF2                 xxxxxxxxxxxxxxxx>smallRNA(i) xxxx>smallRNA(s)xxxxxxxxxxxxxxxx>smallRNA(i) ------>NtERF2              xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxxx>smallRNA(s)xxxxxxxxxxxxxxxx>smallRNA(i)             xxxxxxxxxxxxxxxx>smallRNA(s) xxxxx   ttgctctgatgattcatgataactcgacggatcgcatggcctctgtgctggcgacgcatcattcaaatttctgccctatcaactttcgatggtaggatag  14209000                       xxxxxxxxxxxxxxxx>smallRNA(s)                    ----------->HVH21                    xxxxxxxxxxxxxxxx>smallRNA(s)                                              ------>NtERF2                    --------->ALFIN1                                                     <xxxxxxxxxxx             xxxxxxxxxxxxxxxx>smallRNA(i)                                          <xxxxxxxxxxxxxxxxsmallRNA(s)      xxxxxxxxxxxxxxxx>smallRNA(s)                                            xxxxxxxxxxxxxxxx>smallRNA(s)   -------->P----------->HVH21                                                xxxxxxxxxxxxxxxx>smallRNA(i)   xxxxxxxxxxxxxxxx>smallRNA(s)                                               <xxxxxxxxxxxxxxxxsmallRNA(s)   xxxxxxxxxxxxxxxx>smallRNA(i)                                             xxxxxxxxxxxxxxxx>smallRNA(s)  xxxxxxxxxxxxxxxx>smallRNA(s)                                          xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxxxxxx>smallRNA(s)                                          xxxxxxxxxxxxxxxx>smallRNA(i) xxxxxxxxxxxxx>smallRNA(s)                                             <---------ALFIN1  <-----------RAV1(2) xxxxxxxxxxxx>smallRNA(i)                                            -------->P    <xxxxxxxxxxxxxxxxsmallRNA(i) xxxxxxxxx>smallRNA(s)xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxxxxxx>smallRNA(s)xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxx>smallRNA(s)----------->TGA1      xxxxxxxxxxxxxxxx>smallRNA(s)xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxxxxx>smallRNA(s)xxxxxxxxxxxxxxxx>smallRNA(s)            <xxxxxxxxxxxxxxxxsmallRNA(s)    x xx>smallRNA(i)    <-----------HVH21xxxxxxxxxxxxxxxx>smallRNA(s)   xxxxxxxxxxxxxxxx>smallRNA(s)<----- xxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxxxxxx>smallRNA(s)      xxxxxxxxxxxxxxxx>smallRNA(i)<------NtERF2 xxxxxxxxxxx>smallRNA(s)xxxxxxxxxxxxxxxx>smallRNA(s) xxxxxxxxxxxxxxxx>smallRNA(s)xxxxxxxxxxxxxxxx>smallRNA(s)   tggcctaccatggtggtaacgggtgacggagaattagggttcgattccggagagggagcctgagaaacggctaccacatccaaggaaggcagcaggcgcg  14209100                     <--------P               <xxxxxxxxxxxxxxxxsmallRNA(s)             <-----------HVH21            xxxxxxxxxxxxxxxx>smallRNA(i)            xxxxxxxxxxxxxxxx>smallRNA(s)            ----------->HVH21            ------>ZmHOX2a(1)           xxxxxxxxxxxxxxxx>smallRNA(s)          xxxxxxxxxxxxxxxx>smallRNA(s)          ----------->RAV1(2)         xxxxxxxxxxxxxxxx>smallRNA(s)       xxxxxxxxxxxxxxxx>smallRNA(i)       xxxxxxxxxxxxxxxx>smallRNA(s)      xxxxxxxxxxxxxxxx>smallRNA(s)      xxxxxxxxxxxxxxxx>smallRNA(i)     xxxxxxxxxxxxxxxx>smallRNA(s)    ----------------->AGL1----------->GT1                                                      xxxxxx    xxxxxxxxxxxxxxxx>smallRNA(s)                    <----------DOF2                           xxxxxxx  xxxxxxxxxxxxxxxx>smallRNA(s)                  <xxxxxxxxxxxxxxxxsmallRNA(i)                  xxxxxxx  <-----------GT1<---------O2              xxxxxxxxxxxxxxxx>smallRNA(i)                      xxxxxxxx xxxxxsmallRNA(s)xxxxxxxxxxxxxxxx>smallRNA(i) <xxxxxxxxxxxxxxxxsmallRNA(s)           >>>>>>>>>RAP2.2x xxxxxxxxxxxxxxx>smallRNA(s)              xxxxxxxxxxxxxxxx>smallRNA(i)      <---------------AtSPL8  < -NtERF2xxxxxxxxxxxxxxxx>smallRNA(s)   <-----------GT1<----------DOF2       --------------->AtSPL8 xx   caaattacccaatcctgacacggggaggtagtgacaataaataacaataccgggctctttcgagtctggtaattggaatgagtacaatctaaatccctta  14209200  Previous    Next  AGI:  At3g41768.1    Description:  rRNA. 18SrRNA Range:  from: 14208663    to: 14210470    Orientation: Forward Links:  TAIR  MIPS