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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
------>
ZmHOX2a(2)
<------
ZmHOX2a(2)
--------->
CCA1(2)
--------->
ARR11(3)
--------->
ARR14(2)
<---------
ARR14(2)
<---------
AGP1
<---------
ARR11(3)
--------->
MYB46(3)
--------->
AGP1
----------->
RAV1(1)
--------->
ZAT18
--------->
HSFB2a(2)
--------->
ANAC46
<---------
DEAR3(1)
<---------
HSFB2a(2)
--------->
ANAC58
--------->
ALFIN1
--------->
GLK1(2)
--------->
ANAC58
--------->
DAG2
->
At4g35610
---------->
DOF2
---------->
DOF2
----------->
GT1
aacgattctagatctgatttcataagacccagcgattaagcaacaacgaggtttagataaacaaaagtgggcgaaattagaagagataaacacacagaga
8100400
<--
<---
----
--------->
DAG2
----
---------->
DOF2
----
--------->
ANAC58
<---
<----------
ID1
<---
--------->
ANAC58
------
--------->
CCA1(2)
--------->
At4g35610
<---------
ARR11(3)
---------->
DOF2
--------->
YAB1
--------->
ARR11(3)
--------->
YAB1
<---------
ICU4
--
--------->
ARR14(2)
----------->
GT1
--------->
WOX13(1)
<---------
ARR14(2)
--------->
GLK1(2)
<---------
CCA1(2)
<---------
ATHB12
cgattccaaaacagatgatgaagatttgaaacgaaaaagtgaagaatcgtaaaagttgaaaacgaattcaaatcttac
atttgtcaatcatctcaaatag
8100500
----------->
RAV1(2)
<-------
TEIL
--------->
At4g35610
<---------
YAB1
<---------
At4g35610
<------
ZmHOX2a(2)
----
ZmHOX2a(2)
<---------
ZAT2
--------->
ARR11(3)
------
ARR11(3)
--------->
ZAT2
----------->
RAV1(1)
-------
----->
ARR11(3)
------->
GAMYB
--------->
At4g35610
<---------
ARR11(3)
----->
ARR14(2)
<---------
WRKY12
<---------
ANAC58
--------->
LBD16
--------->
ARR14(2)
----->
AGP1
--------->
ANAC46
<---------
ANAC58
--------->
ANAC46
<------
ZmHOX2a(1)
------
ARR14(2)
--------->
ANAC58
<---------
At4g35610
--------->
ARR14(2)
<------
ZmHOX2a(2)
------
AGP1
<---------
ICU4
<---------
WRKY38(1)
<---------
CCA1(2)
<---------
ARR14(2)
--------->
ARR11(3)
----->
ARR10
--------->
ANAC58
--------->
At4g35610
------->
TEIL
<---------
ARR14(2)
---->
ZmHOX2a(2)
<---------
REM1(2)
------->
TEIL
<---------
At4g35610
--------->
MYB52(1)
atcttcgtcttcatcattttcttcacgctcaacgagctgcatctggctcgtttcttcagct
ctatgaatccgaaacaacacaaacagatcaggatcatcg
8100600
--------->
ANAC46
--------->
ANAC58
--------->
ANAC58
--------->
ZAT18
<-------
TEIL
--------->
At4g35610
---------
<---------------
AtSPL8
--------->
GLK1(2)
--------->
MYB59
--------->
AtMYB61
>>>>>>>>>
TBF1
--------->
AHL20(2)
<-----------
RAV1(2)
--------->
TOE1(3)
>>>>>>>>>
TBF1
-->
At4g35610
<-----------
HVH21
---------->
DOF2
<---------
YAB1
>>>>>>>>>
TBF1
gaaaacaaaataaaaacgagaagaagcgagtcaggtacacaaaacttaagacaaagcttaaaccaaaacgatgaatggagaagaagaagaagaatcgtag
8100700
<--------
HAHB4
--------->
WOX13(1)
<---------
ICU4
<------
ZmHOX2a(2)
<---------
ATHB12
--------->
ARR11(3)
--------->
ICU4
<---------
ZAT2
---------->
DOF2
<---------
ATHB12
--------->
ANAC58
<-----------
ARR10
>
YAB1
<---------
ARR11(3)
--------->
ANAC58
<----------
DOF2
--------->
ZAT2
<---------
GLK1(2)
tagagagaaagagagagatcaatcacttac
ttaagagaagccatcat
tttctcgctctaagagtctctaagcttggaagagtgagagagatagaattttg
8100800
<------------
CBF
<---------
ANAC55(2)
--------->
ANAC58
--------->
ANAC55(2)
--------->
ANAC58
<---------
LBD16
--------->
ARR14(2)
<-----------
HVH21
<-------
GAMYB
<------
NtERF2
--------->
LBD16
<---------
MYB46(3)
<---------
ANAC58
<---------
ANAC46
*
TSS
<---------
ANAC58
<---------
ICU4
<---------
ANAC58
<---------
AHL20(2)
<-------
GAMYB
<-----------
ARR10
<---------
TOE1(3)
<---------
ARR14(2)
<---------
YAB1
--------->
GLK1(2)
<---------
TOE2(3)
<---------
SPL7
<---------
ANAC58
--------
--------->
ARR11(3)
<-------
TEIL
<---------
ANAC58
<---------
ANAC58
<---------
MYB52(1)
<---------
ARR11(3)
<---------
TOE1(2)
<---------
LBD16
---------->
DOF2
<---------
ANAC46
aaattcgaaatttgaaaatctttgctc
gatttgcttcgagggttcaaggtttttaatggcgggttacggaattgaaagcgtgattctaattccgttgatt
8100900
--------->
ICU4
<-----------
HVH21
--------->
O2
<---------
O2
------->
GAMYB
<---------
ANAC55(2)
--------->
At4g35610
--------->
ANAC55(2)
<---------
At4g35610
--------->
TGA1a
--------->
LBD16
--------->
ANAC46
--------->
ANAC58
--------->
ANAC58
--------->
ANAC58
<---------
ZAT14
--------->
ANAC58
<---------
HSFB2a(2)
<---------
ZAT18
<---------
bZIP60(1)
--------->
HSFB2a(2)
--------->
ZAT18
--------->
bZIP60(2)
--------->
ANAC46
--------->
ZAT18
--------->
bZIP60(1)
<---------
ANAC55(2)
<---------
ZAT18
<---------
TGA1a
--------->
ANAC55(2)
<---------
ANAC58
<-----------
STF1
--------->
ARR14(2)
<---------
ANAC58
---------->
DOF2
<---------
ARR14(2)
<---------
MYB52(1)
=================
bZIP_DOF
<---------
ANAC58
<---------
ANAC58
<------
NtERF2
<-----------
TGA1
<---------
ANAC58
<------------------------
ANAC81
<----------
DOF2
<---------
ICU4
<----
->
ATHB12
<---------
LBD16
<---------
ANAC58
<----------
DOF2
====================================
bZIP_DOF
tgaatttgggttccgcaactgaatttgttttcgtttgtgtgctcttctttgttatacatgactttgtttgatggctgcgataatgccacgtcatagttat
8101000
<
<x
<xxxx
<-----
<xxxxxx
xxxxxxxx
<xxxxxxxx
<xxxxxxxx
<xxxxxxxx
<xxxxxxxx
xxxxxxxxx
<xxxxxxxx
<xxxxxxxx
<xxxxxxxxx
<xxxxxxxxx
<xxxxxxxxx
<xxxxxxxxxx
<xxxxxxxxxx
<xxxxxxxxxx
<xxxxxxxxxx
<xxxxxxxxxx
<xxxxxxxxxxx
<xxxxxxxxxxx
xxxxxxxxxxxx
<xxxxxxxxxxx
<xxxxxxxxxxx
<xxxxxxxxxxx
<xxxxxxxxxxx
<xxxxxxxxxxxx
<xxxxxxxxxxxx
<---------
WRKY38(1)
<xxxxxxxxxxxxx
--------->
WRKY18(1)
<xxxxxxxxxxxxxx
--------->
At5g28300
<xxxxxxxxxxxxxx
--------->
ETT(2)
<xxxxxxxxxxxxxx
<---------
ETT(2)
--------->
GLK1(2)
<-----------
GT1
<----------
DOF2
<xxxxxxxxxxxxxxx
-----
YAB1
----------->
GT1
---------->
DOF2
<---------
DAG2
<xxxxxxxxxxxxxxxxxxxx
catccgtctatcgacggtcaatagaaggaatctaggtgaaaaaaagagaatattacactcttaaacacttttttaaaactatttctgtgtttaggcactt
8101100
<----------
DOF2
<---------
DAG2
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
--------->
MYB59
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
xxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
xxxxxxxxxxxxxxxxxxx
smallRNA(le3)
-----
DOF2
<xxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
xxxxxxxxxxxxxxxxx
smallRNA(si3)
xxxxxxxx>
smallRNA(i)
xxxxxxxxxxxxxxx
smallRNA(i2)
xxxxxxxxxxxxxxx
smallRNA(l2)
xxxxxxxxxxxxxx
smallRNA(le3)
xxxxxxxxxxxxxxx
smallRNA(le3)
xxxxxxxxxxxxxx>
smallRNA(se3)
xxxxxxxxxxxxxx
smallRNA(s2)
xxxxxxxxxxxxxx
smallRNA(si3)
xxxxxxxxxxxxxx
smallRNA(fl3)
xxxxxxxxxxxxxx
smallRNA(si3)
xxxxxxxxxxxxxx
smallRNA(le3)
xxxxxxxx
smallRNA(si3)
xxxxxxxxxxxx
smallRNA(le3)
<-------
MYC3
xxxxxxxxxxxx
smallRNA(fl3)
------->
MYC3
xxxxxxxxxxxxx
smallRNA(si3)
--------->
TOE2(2)
xxxxxxxxxxxxx
smallRNA(le3)
------->
GAMYB
xxxxxxxxxxx
smallRNA(si3)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
xxxxxxxxxxx
smallRNA(le3)
--------->
YAB1
xxxxxxxxxxx>
smallRNA(si3)
--------->
TOE2(3)
xxxxxxxxxxxx
smallRNA(l2)
--------->
TOE1(3)
xxxxxxxxxxxx
smallRNA(si3)
<---------
YAB1
xxxxxxxxxx
smallRNA(le3)
<---------
ARR11(3)
xxxxxxxxxxxx
smallRNA(le3)
--------->
ARR11(3)
xxxxxxxxxxx
smallRNA(le3)
<---------
AHL20(2)
xxxxxxxxxxxx
smallRNA(le3)
--------->
AHL20(2)
xxxxxxxxxx
smallRNA(si3)
<-----------
GT1
<---------
AHL20(1)
xxxxxxxx
smallRNA(le3)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
<----------
DOF2
xxxxxxxx
smallRNA(i2)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(i2)
<---------
TOE1(2)
xxx
smallRNA(le3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<---------
TOE2(2)
<---
xxxxxxxx
smallRNA(le3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
<---------
ALFIN1
<xxxxxxxxxxxxxxx
xxx
smallRNA(le3)
<-----------
GT1
--------->
AHL20(1)
<-----------
GT1
<---
tcaaaagattaggcacttttttatgtttttttactaaaataccctcttaactaaaatattatcttaacccacgttttctctctttctctctctctcttca
8101200
<<<<<<<<<
TBF1
<-----------
GT1
<xxxxxxxxxxx
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
<<<<<<<<<
TBF1
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<xxxxxxxxxxxx
<----------
DOF2
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
<---------
HSFB2a(1)
------
CCA1(2)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
<---------
HSFC1(2)
xxxxxxxx
smallRNA(se3)
<---------
At4g35610
--------->
HSFB2a(1)
------
At4g35610
<---------
CCA1(2)
--------->
HSFC1(2)
tctctctctttctctctctctctctcttcatctctctctctctcttcacctctctctctcttcatctttgtaaaaaatgagaagaaacttcttcttcttc
8101300
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AGI:
At3g22880.1
Description:
ATDMC1 (RECA-LIKE GENE); ATP binding / DNA-dependent ATPase/ damaged DNA binding. Identical to Meiotic recombination protein DMC1 homolog (LIM15) [Arabidopsis Thaliana] (GB:Q39009;GB:P93001;GB:Q4V3A9;GB:Q9LIL0); similar to ATRAD51 (Arabidopsis thaliana Ras Associated with Diabetes protein 51), damaged DNA binding [Arabidopsis thaliana] (TAIR:AT5G20850.1); similar to Meiotic recombination protein DMC1 homolog (GB:Q96449); contains InterPro domain Meiotic recombinase Dmc1; (InterPro:IPR011940); contains InterPro domain DNA repair Rad51/transcription factor NusA, alpha-helical; (InterPro:IPR010995); contains InterPro domain AAA+ ATPase, core; (I
Range:
from: 8097694
to: 8100827
Orientation: Reverse
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.