Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved binding sites (0-100)   1        10        20        30        40        50        60        70        80        90        100                                                         <-----------RAV1(2)        ------>ZmHOX2a(1)                             ------>ZmHOX2a(1)          <-----------GT1 -----DOF2          ------>ZmHOX2a(1)           <---------ALFIN1               <----------DOF2<------   tagatttctccttagccttctccttcttcagaattggattaagttctctaccactcctcagggagatggattgaacatactctttaccactgtagtcttt  5911700                                                                    <----------DOF2                                          ------>ZmHOX2a(2) <-----------GT1                                          ==================HOX2a_HOX2a                                         <------ZmHOX2a(2) ----------->HVH21                    <----                                 <------NtERF2         <xxxxxxxxxxxxxxxxsmallRNA(i)           <------  <-------TEIL                   ------>NtERF2       ------>ZmHOX2a(1)                        <------ ----DOF2             <-------GAMYB      ===================HOX2a_HOX2a                     ------>NtERF2   cgggttcgtgattggtgtttagccggttattgggccgcgagagatctctctcatcctacttgtgacctcccttttcagggttctggtgtttcggcgcttc  5911800                                            <---------O2                                        ----- -------RAV1(2)                             --------->O2                                       <----- ----DOF2                          <-----------GT1                                    <----------DOF2 -----HVH21                       <-----------GT1                               ---------->DOF2<-----   aggcacaagtatgaaaaaataaaactacgcgaaatttaaacatttcgcgtggcaatgcctctcgggctgtttagcagcaaaccaaaggctttattcccgt  5911900                                                                              <------NtERF2                                                                             ------>NtERF2                                                                          ------>NtERF2                                                   <-----------GT1        <------NtERF2           <-- ------>HVH21                          <------ZmHOX2a(1)               xxxxxxxxxxxxxxxx>smallRNA(s)-- ------TGA1                           ----------->GT1                 <-----------HVH21 ----------->RAV1(2) ------HVH21---------->DOF2  --------->ALFIN1----------->GT1       ------>ZmHOX2a(1)   <-----------ARR10   cacattggcactgaaaaagggtgccctcgatgtggagcagaggaaaaatgtataaaccatcttctcttcctatgtccgccggcgagacaaatctgggcct  5912000                                                                             ---------->DOF2                                                               ------>ZmHOX2a(1) ---------HVH21                                              <-----------------AGL1 -------->ID1    --------------->AtSPL8                      ----------------->AGL1          <------ZmHOX2a(1)   tgtcccctatcccgtcttcggagtacctcttcccccggaattctcacttctagaattttgatttcctactctggcgagggaaagaatttgatataggaga  5912100                                                     ----------->GT1                       *TSS  ----------->GT1       <------------MYB.PH3(1)    ------->TEIL                 <---------AtLEC2               ----------->HVH21        <------------CBF    <-------   agacattcttgagatatttccatggatactctggtatatttggaagagtcgtaaccggtttatcttcgaaaacgtgattgaatctccacaagaaacttta  5912200                                                                                               ======                                                                               --------->PCF5  <-----                                                                              <-----------HVH21<-----   ------------>CBF                                                     <-----------RAV1(2)    ------  <-----------GT1          ---------->DOF2                             ------>ZmHOX2a(1)     <------- ---DOF2          ---------->DOF2        ---------->DOF2               <xxxxxxxxxxxxxxxxsmallRNA(i)   gattttgcaattcaagaagcaaaagtttggaaagaagcaaattcaaaggagtcagttttggagtaccctcgtcctcaggcggtccctgctaatattttcc  5912300                                                                         >>>>>>>>>>WRKY6                                                                         >>>>>>>>>>WRKY26                                                                         >>>>>>>>>>WRKY38 ==================================================================================================== ------------AGL1                                                        >>>>>>>>>>WRKY43 ------------AG                                                          >>>>>>>>>>WRKY11 ----------->AGL1                            <----------DOF2        ------>ZmHOX2a(1)    ------>ZmHOX2a(1) ----GT1                ------->TEIL   ----------->HVH21        <---------PCF2          <------------   ctactcggaatgttgtcagtttgatgcatcttggcacttagatgacactttgagtggacatggatgggtcctagttgaccaagataatgtccttcatttg  5912400         <---------ABI4(2)        --------->ALFIN1  ---------->DOF2                                                                       ----------->HVH21 =====MADS_MADS                                                                        <-----------HVH21 -----AGL3  <------NtERF2                                                    ------>ZmHOX2a(2)   ggtctaaagagtgcgccgaagagcctatcaccattacacgctgaagttgattcgttgttatgggcaatagagtgtatgatctcgataggtgtcacggatt  5912500                               <----------DOF2                       ------>ZmHOX2a(2)            xxxxxxxxxxxxxxxx>smallRNA(i)                        <-----------RAV1(1)        <---------           xxxxxxxxxxxxxxxx>smallRNA(i)                       <----------DOF2     <----------DOF2 <----------DOF2     <-----------ARR10                     -------->P       xxxxxxxxxxxxxxxx>smallRNA(i)   gctctttctcatccgattgtgctgatcttatctctttactggaaaaaccttcggagtggcctacctttgttgctgaaatagcgactttcggttcttttgt  5912600  Previous    Next  AGI:  At2g14040.1    Description:  transposable element gene. gypsy-like retrotransposon family (Athila), has a 1.0e-99 P-value blast match to gb|AAL06421.1|AF378079_1 reverse transcriptase (Athila4) (Arabidopsis thaliana) (Gypsy_Ty3-family) Range:  from: 5908064    to: 5912123    Orientation: Reverse Links:  TAIR  MIPS