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   Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved binding sites (0-100)
 
1        10        20        30        40        50        60        70        80        90        100 
                                                                                             ------>NtERF2
                                                                                            <-------
                                                                                          ------>NtERF2
                                                                                        <------NtERF2
                                                                                    <------ZmHOX2a(1)
                                                                           --------------->AGL15
                                                             ------>ZmHOX2a(1)------>ZmHOX2a(1)
     ----------->GT1                                <-----------HVH21     <-----------GT1-----------
   ---------->DOF2                              -------->P------>ZmHOX2a(1)<---------------AGL15<---
-------->DOF2                 <-------TEIL    ----------->HVH21       <----------DOF2  ------>NtERF2
 
atgaagcaaagtaataaactcattatcagcagctgcatcaaaactaggcctaaccggtctcctcctcccagaacttttctccttataggacgccgacacc  25517800
                                                                            <-----------HVH21
                                                                            <-----------TGA1
                                                                           --------->O2
                                                  ------>NtERF2 <-----------HVH21
 ----------->HVH21                                ============================RAV
--ALFIN1                 ----------->RAV1(1)      ----------->RAV1(1)      --------->TGA1a
>HVH21         <------NtERF2------->GAMYB        ----------->HVH21<-----------RAV1(2)
--------HVH21 ------>NtERF2<-----------RAV1(2) ------>NtERF2    <-----------TGA1         ------>NtERF2
 
gtcaatgacggatacggcgtcggaatcgcaacaggcgttgtagcttgctccgccgacaaaaaaccaccgtcagccgaaacgtcagacatctccgactact  25517900
                                             ------>ZmHOX2a(2)
                                            <------ZmHOX2a(2)
                                           <-----------ARR10
                                       <-----------RAV1(2)
                                      =============HOX2a_HOX2a
                                      ------>ZmHOX2a(1)
                                      ==============HOX2a_HOX2a
                        <---------ALFIN1   <---------AGP1
                      =============================RAV                ---------->DOF2
<------ZmHOX2a(2)     ----------->RAV1(1) <------ZmHOX2a(1)  <-------TEIL
 
ccgatctaaattccttccgattcaacaacacatcaaaattcctcaggatctatacacactcagatgcaaacaaaaaagtagcttcaaaatgcagatttct  25518000
             <----------DOF2
     ------>ZmHOX2a(2)
    <------ZmHOX2a(2)                                       ---------->DOF2       ------>ZmHOX2a(2)
  <------ZmHOX2a(1)                          ----------->RAV1(1)                 <------ZmHOX2a(2)
 
agagaggatccaaatgcttttctctgggatttcaaatcagagtctcaacaacatatctagagagaaagagatagtttcagagagatcgttcgtttttttt  25518100
                                                                      <----------DOF2
                                              ----------->HVH21<-----------GT1
                                             <-----------HVH21*TSS<----------DOF2                  -
 
tttttttttgtagtgatggaaacaagagagagagtgagatttaaatgctgtcacagtgttgttgtttatctttctttctctagtcgtcttctctaatagc  25518200
                         <----------ID1
                  ----------->GT1
 ----------->HVH21<----------ID1              <-------GAMYB
-------->ALFIN1  ----------->GT1             ----------->GT1  <-------TEIL                        <-
 
aagtgtgacaagacaagaagagggaaaaaaaacaaagattagattaggttgttaattaatcaacgttcacttgatcaagcacttaagtatgaaatataga  25518300
                                                      <-------GAMYB
----------->GT1      ----------->GT1                 ----------->GT1       ----------->GT1     -----
-------P      ----------->GT1       ------->TEIL--------->ALFIN1    <--------P            ----------
 
ggttagtaattataatatagtaaatggcaatattgtatgtatataatttaggtggatggttaattattttggttagtgatgtgattagcgtagaaaagat  25518400
                              <------ZmHOX2a(1)                                         ------------
------>GT1      <----------DOF2        ----------->GT1                                <-------TEIL
>DOF2 ---------->DOF2  <-----------HVH21          <----------DOF2   <-----------RAV1(1) <-----------
 
gtgattagtcaaagagatgctttgcgcgtgagaggagggaacgtgtaatatgtctttttttttttttttttttgttgttgttaactaaatacgtgtacac  25518500
                                     ===============================================================
                                     --------------->AGL15
                                     <---------------AGL15
                                     <----------DOF2
                                   ---------->ID1
                                  <-----------GT1
                           <----------DOF2
--->AtSPL8              ------>ZmHOX2a(2)                              <----------DOF2            --
----AtSPL8             <------ZmHOX2a(2)                     ------->TEIL  <-----------GT1        <-
 
taatctaatcactgtaatctgttgagatctctttgtttttctttttgagggacaatcaattatgtatgttttctcttttaacaaatttgattgattctct  25518600
          <----------DOF2
          ------>ZmHOX2a(1)
   ---------->DOF2
==============MADS_MADS
------------->AGL15
--------------AGL15                                   ----------->GT1
 
actaataaaagtccttttaaattgttatgagaaacaaaaaaaatctatttaaattgaatgtaaatcaatataatgtttcgttttttgaatatcactgcca  25518700
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AGI:  At1g68060.1   
Description:  ATMAP70-1 (MICROTUBULE-ASSOCIATED PROTEINS 70-1); microtubule binding. similar to ATMAP70-2 (microtubule-associated proteins 70-2), microtubule binding [Arabidopsis thaliana] (TAIR:AT1G24764.1); similar to ATMAP70-4 (microtubule-associated proteins 70-4), microtubule binding [Arabidopsis thaliana] (TAIR:AT1G14840.1); similar to ATMAP70-3 (microtubule-associated proteins 70-3), microtubule binding [Arabidopsis thaliana] (TAIR:AT2G01750.1); similar to hypothetical protein OsJ_008022 [Oryza sativa (japonica cultivar-group)] (GB:EAZ24539.1); similar to hypothetical protein OsI_008672 [Oryza sativa (indica cultivar-group)] (GB:EAY87439.1); similar
Range:  from: 25514604    to: 25518163    Orientation: Reverse
Links:  TAIR  MIPS