Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved binding sites (0-100)   1        10        20        30        40        50        60        70        80        90        100         ----------->HVH21 ------>NtERF2 ------O2               ----------->HVH21 ---->TGA1          <-----------HVH21                                                     ------->TEIL ---->HVH21  --------->ALFIN1                                                <----------DOF2   cgacgcccatcgacggtggtgcggtcatgaccgagtccaatctggctgtagctagcaccaagattgaatagaacagctgctttctccaaatgaatgttct  5209500                                                      ----------->HVH21                   <---------AtLEC2                 <-------GAMYB    <-----------RAV1(2)              <----------DOF2                     <------NtERF2    <-----------HVH21       <----------DOF2 ---------->DOF2   ---------->DOF2       ------>ZmHOX2a(2)   gctgagtagctttatgcttttgcttgaaagcatcgtaccatacgaaagagacggcgttgacatgatccttgtcaggggaaattggaaatcgcgtctccac  5209600                                                        ------>ZmHOX2a(2)               <----------DOF2                                                     ================================HOX2a_HOX2a                                                     =================================HOX2a_HOX2a         <----------DOF2                   ----------->RAV1(2)                 ------>ZmHOX2a(2)  ---------->DOF2  <------ZmHOX2a(1)  ------>NtERF2  <------ZmHOX2a(1)        <------ZmHOX2a(2)   aagacaaagaactttgtaataggagatgagaaggtctcgccgagcagctggagaaggatcggaaacgcgttctatatcggatcggagctgcttcaaggtc  5209700                                                                                ------->GAMYB                ----------->RAV1(2)                                        <------ZmHOX2a(2)    ------>ZmHOX2a(2)                     ---------->DOF2       ==================HOX2a_HOX2a   <------ZmHOX2a(2)                <--------P                  <------ZmHOX2a(1)   tcgagatcgtcgtctataagctgagcctcgcgctcagagtaggtgaaagtaacgtagttgcggagaggacggtagagatcaacggagctcgtcttcttct  5209800                                                                  <----------DOF2                                                       ===============HOX2a_HOX2a                                                       ------>ZmHOX2a(1)     <-----------GT1                                            <-------GAMYB      ------>ZmHOX2a(2)             <-------   catgaatggcgagcatcagattagagagcgaagaagaagccatggcggttcaaaatcctcttcgatcgctcttccgatttttctaattttcttcgatttt  5209900                                                ============================HOX2a_HOX2a                  <------------CBF              ------>ZmHOX2a(2)                =============================HOX2a_HOX2a                ------>ZmHOX2a(1)            =====================================HOX2a_HOX2a             <------ZmHOX2a(2)               <------ZmHOX2a(1)       ------>ZmHOX2a(1)            ------->TEIL              ------>ZmHOX2a(2)     ------>NtERF2  ------>ZmHOX2a(2)--------- ---DOF2  *TSS------>ZmHOX2a(2)       ==============HOX2a_HOX2a      =============HOX2a_HOX2a   tggtttccttgatggatccttattgactaagagaagatgatcgtgaaggatcgtgagaacgacaccaagtcctgtgatcttctatgaaaacggcgtgcag  5210000                                                                                                 ----                                       <----------DOF2                                         ======                                   <-----------GT1                                             ------           >>>>>>>>>GT-1       <----------DOF2   <----------DOF2       ----------->GT1         ------ >ALFIN1----------->GT1<------ZmHOX2a(2)   <-----------GT1 <-----------RAV1(1)             <---------   tctaatttagtggttaatacagtcgatcaatggcttttaagcttttttccgcgttaattaaatgtggcaacgatggtgatttattttgtggaacttttcc  5210100 -->ZmHOX2a(1) ================================================================================MADS_MADS ----------->AGL1                                                     ---------->DOF2 ----------->AG                                                  <---------------AGL15    ----------- -DOF2            <-----------GT1                                --------------->AGL15  ---------->DOF2   taattagaaacatgtctaattcacaatattttttggtataaatcttcttggtatatgtagaaattttctattgaaagtagaagaaatatgcaaagtatat  5210200                                            ----------->HVH21                                    <-----------RAV1(1) >GT1                         ---------->DOF2   agagcatggacattaacatgatcactaatcaaaaaagaatgttgtggtgacaatcaacacagtagtattaatttttaagggactacaaaattctgtgtgt  5210300                                    ---------->DOF2                          <----------DOF2                                                      <<<<<<                       <------ZmHOX2a(1)                   ----------->GT1                   <-------   ttatgaattagagaggccttgaagaggactttcgtatcaaaagaataatgatgtgaagaaacagtaaaattatacgataatacaagaactatatctgtca  5210400  Previous    Next  AGI:  At1g15130.1    Description:  hydroxyproline-rich glycoprotein family protein. similar to ALG2-interacting protein X [Nicotiana tabacum] (GB:BAD15108.1); similar to hypothetical protein OsI_033019 [Oryza sativa (indica cultivar-group)] (GB:EAY79060.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO42232.1); contains InterPro domain BRO1 (InterPro:IPR004328); contains InterPro domain t-SNARE; (InterPro:IPR010989) Range:  from: 5205997    to: 5209910    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At1g15140.1    Description:  oxidoreductase NAD-binding domain-containing protein. similar to ATLFNR2 (LEAF FNR 2), poly(U) binding [Arabidopsis thaliana] (TAIR:AT1G20020.3); similar to ATLFNR2 (LEAF FNR 2), NADPH dehydrogenase/ oxidoreductase/ poly(U) binding [Arabidopsis thaliana] (TAIR:AT1G20020.1); similar to ATLFNR2 (LEAF FNR 2), poly(U) binding [Arabidopsis thaliana] (TAIR:AT1G20020.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO42229.1); contains InterPro domain Flavoprotein pyridine nucleotide cytochrome reductase; (InterPro:IPR001709); contains InterPro domain Oxidoreductase FAD/NAD(P)-binding; (InterPro:IPR001433); contains InterPro domain Pheno Range:  from: 5210201    to: 5212344    Orientation: Reverse Links:  TAIR  MIPS