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   Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved binding sites (0-100)
 
1        10        20        30        40        50        60        70        80        90        100 
         ------->TEIL
     --------------->AtSPL8
     ------->TEIL        <-----------GT1
 
aattactgtatgtaccaaaaccacatttataccaaaccgcatcataaaataaaataaaaattcttaaggcctgttttgtagattttgtaagagtttttgg  5198600
                                                                                      <-----------GT1
                                                               ----------->GT1 ----------->GT1
 
tttttgttttttaaaaacttattttcataccaatcaagattttaaaattttggtttccctacaatttagtaaaactattttattgtaattttccattcat  5198700
                            <------ZmHOX2a(1)
                ----------->GT1                    <xxxxxxxxxxxxxxxxsmallRNA(i)
 
gattttagttttttagtttttgtaaaatttaggaaatctagtttttgttcaatcaacgttatttttctcaaaaaccaaaaaccattttttggagattttt  5198800
 
tgaacaaaaaatataataacaaaaatctaaaactaaaatctaaaattcagaaactaaaatctaaactcaaaaactaaattaaaaatcagggcctaaattt  5198900
                                          <------------CBF                     ---------->DOF2     <
                                  ----------->RAV1(1)      <-----------GT1  ----------->TBP  -------
 
tgacataatatggatagatgatgatagtgagaccaaaccacataatattgcatattttgatgtcaccatttgatagcctataaaaaggagaagaagcaaa  5199000
      ----------->GT1
  <---------AGP1                                                   ----------->RAV1(1)
----------->ARR10                ---------->DOF2      ------>ZmHOX2a(2)           <-----------ARR10
--------P   *TSS       --------->ALFIN1               ----------->GT1             ------->TEIL
--->DOF2    ---------->DOF2  ---------->DOF2         <------ZmHOX2a(2)----------->RAV1(1)
 
gggtagttctggaaaaaaagggaatcgtgggggaaagaaagcagagtcgttttcagatcgtgaatagaagcagcagcagaagccgtatctatccctctct  5199100
                                            ------>ZmHOX2a(1)
                                     --------------->AtSPL3
                                     --------------->AtSPL8
                                  ----------->HVH21                           <-----------GT1
                                <----------DOF2  <----------DOF2          <----------DOF2    ------>ZmHOX2a(1)
 
ctctctctctctctctctctctctctctctctctactttgaccgttcctcttctttttattcatcaacatcatcgagctttctactacttggattcctac  5199200
                                                                                 <----------DOF2
                                                                                 --------------->AGL15
                                                                                 <---------------AGL15
                                                                  <-----------ARR10
                                                      <-----------RAV1(2)   <----------DOF2
            ------>ZmHOX2a(1)                   <-----------------AGL1  ------>ZmHOX2a(1)
 
ttcttcttcttcttcctctgattctctcccattccaatcaatctctagggttcttcttcaggtatctcaaatctcctctcttttctttttattgctaacc  5199300
                                                                   ---------->DOF2
            ---------->ID1                                <-----------GT1
        <----------DOF2                              <----------DOF2                           xxxxx
 
attttcatttactttggcttatttttaagtttaatcttcttctgatattgcgtctgcttttttacctctgcaaagacagaacctttctctgtctctctct  5199400
            <----------DOF2
         ------->TEIL
     --------------->AtSPL8
  ------->TEIL                             <----------DOF2
xxxxxxxxxxx>smallRNA(i)             ----------------------->TaNAC69(2)                       <------ZmHOX2a(1)
 
gcttgtaccttgtaccttttctctctgtatacactccattgtctgccttttctcgtctctcttctcttacagtttttattcattaatttctctcgaggat  5199500
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AGI:  At1g15110.1   
Description:  phosphatidyl serine synthase family protein. similar to unnamed protein product [Vitis vinifera] (GB:CAO68129.1); similar to hypothetical protein OsI_000142 [Oryza sativa (indica cultivar-group)] (GB:EAY72295.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO42217.1); contains InterPro domain Phosphatidyl serine synthase; (InterPro:IPR004277)
Range:  from: 5199013    to: 5202170    Orientation: Forward
Links:  TAIR  MIPS