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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
--------->
AHL20(2)
<---------
AHL20(2)
--------->
AHL20(1)
<---------
ICU4
-------->
YAB1
<---------
AHL20(1)
--------->
ANAC55(2)
--------
ATHB12
--------->
AHL20(2)
--------->
YAB1
----->
WOX13(1)
--------->
DAG2
<---------
AHL20(2)
--------->
ANAC46
<------
>
AGL15
<---------
HSFB2a(2)
--------->
MYB52(1)
----------->
GT1
--------->
YAB1
------
-
AGL15
<-----------
GT1
---------->
DOF2
--------->
AHL20(2)
<-------
TEIL
----------->
GT1
aatcatactctatttttactggagttgcagaaaaagggacttacaaaacgatgaattaaatttggacaagtatatatacataattagaaggttatagaat
20068700
<---------
ANAC46
<---------
ANAC58
<---------
ANAC58
<---------
RVE1(1)
--------->
ARR11(3)
<------
ZmHOX2a(1)
--------->
ANAC58
<---------
TOE2(2)
----------->
GT1
<---------
TOE1(2)
--------->
ANAC58
--------->
TOE1(2)
----------->
HVH21
--------->
DAG2
<-----
<---------
ANAC46
--------->
TOE2(2)
---------->
DOF2
-------
<---------
ANAC58
--------->
TOE1(2)
--------->
AHL20(2)
<--------
<---------
ANAC58
<---------
YAB1
--------->
ZAT18
<---------
AHL20(2)
----------->
GT1
---
GLK1(2)
<---------
ARR11(3)
--------->
ALFIN1
----------->
RAV1(1)
----------->
GT1
--------->
YAB1
--->
GLK1(2)
<---------
CCA1(1)
------>
ZmHOX2a(1)
---------->
DOF2
--------->
AHL20(2)
--------->
YAB1
<
ctagttttcgtaggatatttcttgaattatcctacgagtgtgacaactaaatgcacaacaaaacaacaatttaaatgctaaaaagcaaaaatagtaatta
20068800
<---------
ALFIN1
-------->
P
--------------->
AGL15
<---------------
AGL15
----------------->
AGL1
--------->
AHL20(2)
<-----------------
AGL1
--------->
AHL20(1)
----------------->
AGL3
<---------
AHL20(2)
<---------
ANAC55(2)
------>
MYB83
<---------
AHL20(2)
--------->
ANAC55(2)
----------->
RAV1(1)
--------->
AHL20(2)
<-----------------
AG
------>
MYB46(1)
--------->
AHL20(2)
<---
<-----------------------
TaNAC69(2)
--------->
AHL20(2)
-----
------
GT1
<------
ZmHOX2a(1)
--------->
YAB1
------
-->
ICU4
<---------
ANAC55(2)
------>
ZmHOX2a(1)
--------->
AHL20(2)
----------->
GT1
-
ICU4
<---------
TOE2(3)
<---------
At4g35610
--------->
YAB1
--------->
DAG2
-----------
HVH21
--------->
AtMYB61
<---------
MYB52(1)
--------->
AHL20(1)
---------->
DOF2
ctggtcacctattaaggaacaacaccaacacctatttagctgttatgtcctaataaaaataaaataaaataaaaacaataaaccaaaaaagtaaaaaata
20068900
<-
<-------
TEIL
---
<---------
GLK1(2)
----------->
GT1
<-
<---------
ARR14(2)
<----------
DOF2
<--
------
AHL20(2)
--------->
ARR14(2)
<---------
ICU4
--------->
ICU4
---->
YAB1
<----------
DOF2
------->
TEIL
------------>
CBF
<---------
TOE2(3)
--->
AHL20(2)
<----------
DOF2
<-----------
HVH21
<----------
DOF2
--------->
GLK1(2)
<--
aaaatgtttgactaaaattctctttcttttccgattcgtcattcgatgaatcttcctttcttatacaatttggataatcttttctaatgtaaaaattcga
20069000
--------->
TOE2(3)
----------->
GT1
<---------
CCA1(2)
<---------
TOE2(3)
------>
ZmHOX2a(1)
--------->
YAB1
<---------
YAB1
--------->
YAB1
------>
ZmHOX2a(2)
---
<-----------
TBP
<---------
ARR11(3)
<------
<---------
AHL20(2)
--------->
TOE1(3)
<-----------
GT1
<---------
ARR11(3)
--------
CCA1(1)
<---------
MYB59
==================
HOX2a_HOX2a
<------
------>
ARR11(3)
--------->
TOE2(3)
------>
ZmHOX2a(1)
--------->
TOE1(3)
--------
RVE1(1)
-------->
P
--------->
TOE2(3)
--------->
TOE2(3)
-------
ARR11(3)
----------->
TBP
<----------
DOF2
==============
HOX2a_HOX2a
-------
GLK1(2)
--------->
AHL20(2)
<---------
ALFIN1
--------->
ARR11(3)
<------
gatttttttttataatgttaaatctataaataagagcaacctaaaacgaacaac
ttctcccactttccttattttcgatcttatccttatcttcttcctt
20069100
<------
ZmHOX2a(2)
=================================
HOX2a_HOX2a
<---------
ARR14(3)
--------->
ARR14(2)
<-----------
ARR10
--------->
ARR11(3)
<---------
ARR14(2)
---------->
DOF2
<---------
YAB1
--------->
YAB1
<---------
ATHB12
--------->
ANAC58
<---------
YAB1
--------->
AHL20(2)
--------->
ICU4
<---------
AHL20(2)
--------->
YAB1
--------->
ARR14(3)
--------->
ANAC46
--------->
ANAC55(2)
------>
ZmHOX2a(2)
--------->
ANAC58
------->
ID1
--------->
ANAC46
--------->
AGP1
------>
ZmHOX2a(1)
---
ANAC46
--------->
ANAC58
<---------
ARR11(3)
------>
ZmHOX2a(2)
---
ANAC58
--------->
ANAC58
--------->
RVE1(1)
<---------
ARR11(3)
---
ANAC58
--------->
ANAC55(1)
================================
HOX2a_HOX2a
gttctatttctcttctaactaatctcttctcttctcttaaaatcaaacgtaatcataaataaagatcttcttgtttaatttctcttgatcctcgcaaaat
20069200
--------
<----------
DOF2
---------
--------->
GLK1(2)
--------->
TOE2(3)
--------->
GLK1(2)
--------->
GLK1(2)
<<<<<<<<<<<<<<<<<
LFY
--------->
YAB1
<
<---------
GLK1(2)
<-----------
GT1
---------->
DOF2
----------->
GT1
<
<---------
ARR14(2)
<---------
ANAC58
<---------
YAB1
--------->
ICU4
<
--------->
ARR14(2)
<---------
ANAC58
--------->
ARR11(3)
<---------
YAB1
---------
cacagattcttgaaattcttttttcttgtcttgaaattcttgagttcttgagttatgaaaagacaatggacagagttatgaa
atgataaatctcaaccaa
20069300
<---------
MYB52(1)
-
->
MYB46(3)
--------->
DOF5.7(2)
<-
>
ANAC58
--------->
YAB1
--------->
TOE2(3)
-----
---------
ANAC46
--------->
ANAC55(2)
<----
---------
ANAC58
<---------
TOE2(3)
<-------
---------
ANAC58
--------->
ATHB12
<--------
>
ANAC58
<---------
YAB1
<---------
YAB1
<-----------
GT1
=========
ttccttgtttatcattctatatcagttgtgattcttcattggttttacgttatctcttga
acaaaaaaac
atggcaaacgcagagaagacaagttcaggt
20069400
<---------
ANAC46
<---------
ARR14(2)
--------->
GLK1(2)
---------->
RAV1(1)
<---------
ARR11(1)
--------
ETT(1)
--------->
ANAC58
--------->
ARR14(2)
---->
ARR14(2)
--------->
ANAC58
------->
TEIL
<---------
ANAC58
-----
ARR14(2)
--------->
ANAC58
<---------
ARR14(1)
-----
--
TOE1(3)
--------->
ANAC46
<---------
CCA1(2)
<---------
ANAC58
<-----
---
RAV1(2)
--------->
ANAC58
--------->
LBD16
<------
NtERF2
--------->
ANAC58
===========
RAV
---------->
DOF2
<---------
YAB1
<---------
AtLEC2
--------->
ANAC58
tccgacatagatgagaagaaaagaaaacgcaagttatcaaaccgcgaatctgcaaggaggtcgcgtttgaagaaacagaagttaatggaagacacgattc
20069500
------>
ZmHOX2a(2)
<------
ZmHOX2a(2)
<---------
GLK1(1)
--------->
GLK1(1)
--------->
ARR14(3)
--------->
ARR11(3)
<---------
WRKY18(1)
<---------
ARR14(3)
--------->
At5g28300
--------->
ARR14(2)
----------->
GT1
----------->
HVH21
--------
<---------
ARR14(2)
<---------
At4g35610
<-------
<---------
ARR11(3)
<---------
ZAT14
<---------
ZAT2
<---------
ANAC58
--------->
LBD16
---->
YAB1
---------->
DOF2
--------->
ZAT2
<---------
ANAC58
<---------
LBD16
--
TEIL
<----------
ID1
--------->
ZAT14
--------->
At4g35610
--------->
MYB52(1)
atgagatctccagtcttgaacgacgaatcaaagagaacagtgagagatgtcgagctgtaaaacagaggcttgactcggtcgaaacggagaacgcgggtct
20069600
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AGI:
At5g49448.1
Description:
CPuORF4 (Conserved peptide upstream open reading frame 4)
Range:
from: 20069055
to: 20069961
Orientation: Forward
Links:
TAIR
MIPS
AGI:
At5g49450.1
Description:
ATBZIP1 (ARABIDOPSIS THALIANA BASIC LEUCINE-ZIPPER 1); DNA binding / protein heterodimerization/ transcription factor. similar to GBF6 (ARABIDOPSIS THALIANA BASIC LEUCINE-ZIPPER 11), DNA binding / protein heterodimerization/ transcription factor [Arabidopsis thaliana] (TAIR:AT4G34590.1); similar to bZIP transcription factor bZIP41 [Glycine max] (GB:ABI34673.1); contains InterPro domain Basic-leucine zipper (bZIP) transcription factor; (InterPro:IPR004827); contains InterPro domain Basic leucine zipper; (InterPro:IPR011700)
Range:
from: 20069055
to: 20069961
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.