Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                --------->LBD16                                             <---------HSFB2a(2)                                             --------->HSFB2a(2)                                           <------ZmHOX2a(2)                                          --------->AGP1    <---------ZAT14                       --------->ARR11(3)    <---------At4g35610                   <---------ARR11(3)    --------->At4g35610   ========================HOX2a_HOX2a <---------ANAC58         <------ZmHOX2a(1)--------->CCA1(2) <---------ANAC58--------->At4g35610      --------->ARR14(2) ----TOE2(3)     <-----------------AGL1   <---------ARR14(2) ----YAB1        ----------------->AGL1  --------->GLK1(1)      <-------TEIL --AHL20(2)   ----------->HVH21 --------->AtMYB61       <---------O2      <---------At4g35610   attgagtgctgagtctctgacctgaacaggaagaccaaaaccgagatccagaagacagacttggcatacattttttagcttagagcaagtttgacaaatc  2195500                                                                              <---------YAB1                                                                             <<<<<<<<<<GATA-3                                                                             <<<<<<<<<<GATA-2                                  ------>NtERF2                              <<<<<<<<<<GATA-4                                 --------->DEAR3(1)                          <<<<<<<<<<GATA-1                                 <---------ALFIN1                          ------>ZmHOX2a(1)                                <------NtERF2                             <---------ANAC58                                --------->ATERF1(1)                       <---------ANAC58                               <---------ATERF1(1)               <---------ANAC58                            <-----------HVH21                    <---------ANAC58                       ------>NtERF2                           <---------ARR14(2)                      ------>NtERF2                 <------ZmHOX2a(1)     --------->TOE2(3)                     <---------RAP2.6(2)        ---------->DOF2--------->ARR11(3)                    --------->RAP2.6(3)       ----------->HVH21<---------ARR11(3)                    <---------LBD16 --------->TOE2(3)          --------->ARR14(2)          ------->TEIL--------->LBD16  ---------->DOF2        <---------CCA1(2)--------->YAB1   tcggttttcttgaatctagcattccggcctggtcgccacctaaaagctgtgaaaggacgactacatatcttgcattccttatcataatccgctcgggtct  2195600                                                  --------->ANAC46                                                  --------->ANAC58                                                  --------->ANAC58                       <---------ARR14(2)      <---------ZAT18                                -------                       --------->ARR14(2) --------->ZAT18                                     <------                      <------ZmHOX2a(1)   <-------TEIL        <--------HAHB4                  -------                   <---------ICU4         <---------ZAT14     -------->ATHB1            --------->TOE2(3)                   --------->YAB1         --------->ZAT14     --------->YAB1     --------->TOE1(3)                --------->YAB1          <-------MYC3          --------->ATHB12   --------->TOE2(3)  -             --------->TOE2(3)          <-------MYC2         --------->ICU4--------->YAB1   ------->TEIL             --------------->AGL15      ------->MYC2    --------->YAB1   ------>MYB46(1)--------->TOE1(3)             <----------DOF2    ----------->GT1--------->ZAT14<---------ICU4     <----------DOF2    <         --------->MYB46(3)    >>>>>>>>>TBF1<---------ANAC46--------->GLK1(2) <---------ARR11(3)    -    --------->ANAC46<---------TOE2(3)   ------->MYC3 --------->CCA1(2)   ------>MYB83  ----------->RAV1(2)   acatataaacaacaactttaataaggatttgaagaagaaaaacgtgcagtgcaagctatgagaatcattagcacctacaataactttaaacctgaaccta  2195700                                                                                            <--------                                                                                         <---------GLK1(2)                                                                                     ------->TEIL -->TOE1(3)                                                                          <---------LBD16- ---MYB59                                                                        <---------TOE1(2)  - -->TOE2(3)                <---------ZAT14                                      <------------------SPL14 -------->TOE1(3)          --------->ZAT14                             <-----------GT1   <---------ARR14(2) ---------MYB59       --------->ZAT18       ---------->DOF2    ----------->GT1  <---------AtLEC2 ---- -------->TOE2(3)--------->MYB46(3)   --------->TOE2(3)--------->CCA1(2) <---------YAB1  --------->ARR14(2)   aacctaaattactaagttaacaactccactatacagaaaacatcaacaaagcttaagagatgggagcgagaaatcaccattcgcatgtacggattgtcac  2195800             --------->At4g35610             <---------ZAT2             <---------At4g35610                                                                    -            <---------TOE2(2)                                                                       <            <---------TOE1(2)                                                                       -        <-------TEIL                                                                                -       --------->CCA1(2)                                                                         ----       --------->ARR14(1)      --------->ABI4(2)                                                 ----      <---------ARR14(2)   <---------DEAR3(1)                                                  ------      --------->ARR11(1) --------->ARR14(2)                                                    <-----      --------->ARR14(2) <---------ARR14(2)                                                    ------      <---------GLK1(2) --------->GLK1(1)                                                      <-----    ----------->ARR10   <---------GLK1(1)                ------>ZmHOX2a(2)                   <------- ---HVH21  <-----------RAV1(2) ------>NtERF2           <---------ARR11(3)                 --------->WOX13(1) -------->ANAC58  <---------WOX13(1)           --------->At4g35610                      ------------>CBF -------->ANAC58--------->ATHB12 <----------DOF2 ------>NtERF2                       <---------ARR11(3) ----->DEAR3(1) <---------MYB46(3)       --------->MYB46(3)  <-----------HVH21       --------->ARR11(3)   cgaagcaagattcgcaggtgattgggaaatcggcgctttcccatccatcggctccatgatccctgtgagacattttcttcggtactagatatcaatctcg  2195900                                                                        <------------CBF                                                                       -------->ATHB1                                                                       --------->ATHB12                                                                       --------->ATHB51                                                                       <--------ATHB1      <----------DOF2                                                 <---------ATHB12      ==============================================================================MADS_MADS      <---------------AGL15                                           <---------ATHB51      --------------->AGL15                                           --------->ICU4     <-----------------AGL1                                           <<<<<<<<<<AGL20 -------->bZIP60(1)                                                   <<<<<<<<<<AGL24 ---------bZIP60(1)                                                   <---------YAB1 -------->ANAC58                                                      <<<<<<<<<<AGL22            <--- -------->ANAC58                                                   ------------>ATHB5            <--- ------->TGA1--------->ANAC46                                     ----------------->AGL3        ----- ------->HVH21                                                    ------------>CBF           <-------GAMYB --->O2 <---------YAB1                                       <---------ZAT6               <---------- ----O2<-----------TBP                                      <---------TOE1(3)            --------->PCF5 --->ANAC55(2)                                              <---------TOE2(3)  <----------DOF2<------ ----ANAC55(2)   ---------->DOF2                         <<<<<<<<<MYB98<---------ICU4    --------->PCF2 ------DYT1  <----------ID1                        --------->CCA1(2)--------->WOX13(1)   <---------PCF2   tgacgctacttttataggccaaagtccaaatcgatttggaatttctcttaaaaatatgggttagggttaccaattattgggctttaaactgggcccgtta  2196000                                 --------->ZAT14                                 <---------ZAT14                               --------->At4g35610      --------->YAB1    <---------ARR11(3)    --------->ANAC58    --------->ARR11(3)    --------->ANAC58    <---------ARR14(3) ------TOE1(3)          --------->ARR14(3)                       --------->YAB1 ------TOE2(3)          --------->GLK1(2)                  --------->YAB1                           < ----->DOF2<---------TOE2(3)   <---------At4g35610   ------------>CBF      ------->TEIL       ------- -------AGL1            --------->ARR14(2)--------->ANAC55(2) <---------ICU4              --------->ARR11(3) ---MYB52(1)        --------->YAB1        <---------ANAC55(2) --------->YAB1 <----------DOF2  ------>ZmHOX2a(1)   aggctcaagcattaagaaactttcaaaatcttcagcacacagacacataatagtctacaattcatcatcaaaatacgaactttgatttcaaaaatcctga  2196100                                                                                                    -                                                                                                    <                                                                                                 ----                                                                                                -----                                                                             --------->ANAC58 -------                                                                             --------->ANAC46<-------                                                                    --------->YAB1          <--------                             --------------->AtSPL8                <---------ATHB12        --------->MYB52(1)                             --------->DAG2                      --------->WOX13(1)       <---------ARR14(2)                             --------------->AtSPL3            ------------>CBF           --------->ARR14(2)                             <---------------AtSPL8            <---------ATHB12       ---------->DOF2               <------------CBF          ------>ZmHOX2a(1)   --------->WOX13(1)     <---------AHL20(2) ------------CBF  --------->ATHB12   <---------ALFIN1      ------------>CBF  --------->ANAC58-------- -->LBD16  <------ZmHOX2a(1)---------->DOF2     <-------TEIL--------->MYB46(3)      --------->AHL20(2)   aacattgttaacaggaacattgattagtagaaaagtacccctccttcagattcaaagtttcaacaatcaatcaacacagacgacatttaaaagaaccggg  2196200                                                                                        <---------WOX13(1) -------->ARR11(3)                                                                  <---------MYB52(1) ---------ARR11(3)                                                                 <-------GAMYB -->NtERF2         --------->AHL20(2)                           --------------------->WRI1   -------- ------>HVH21      <---------AHL20(2)                    ------>ZmHOX2a(2)        <---------DEAR3(2) -->LBD16      <------ZmHOX2a(1)                       --------->ARR11(3)         ----------->GT1 --LBD16     <---------TOE1(2)                         <---------ARR11(3)         <------MYB46(1) -LBD16      <---------TOE2(3)               <-----------GT1    <----------DOF2   <------MYB83 ->TOE1(2)   <---------TOE2(2) --------->MYB46(3)  <----------DOF2                <---------MYB46(3)   gacatcttagcctcttaggatttaaatgtttcaacaactccttgatttttcttctttgatcttcttctttttgagtttcttagtcggttaattgacaaag  2196300                    <---------WOX13(1)                  -------->HAHB4                  --------->ATHB12                  <---------ICU4                  <--------ATHB1                  --------->YAB1                 <---------YAB1                 --------->ICU4                 <---------ATHB12               --------->YAB1           --------->ZAT6                                         ---------->DOF2   ----------->GT1          <---------ATHB12                                    <-------TEIL         ----------->GT1 -->DOF2------>ZmHOX2a(1) ----------->GT1                    ------------------------>ANAC81---------   ttgttatgtcctatcagtaatgattgtccagtaatacatatgagtattgaaacagagtttaagatgcaaaaagactagatggaaactggaaaaatagtta  2196400  Previous    Next  AGI:  At5g07060.1    Description:  zinc finger (CCCH-type) family protein. similar to zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT1G07360.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO21518.1); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571); contains InterPro domain RNA recognition motif, RNP-1; (InterPro:IPR000504) Range:  from: 2194395    to: 2195873    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.