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Chromosome 1
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Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
>>>>>>>>>
TBF1
>>>>>>>>>
TBF1
>>>>>>>>>
TBF1
--------->
GLK1(2)
--------->
YAB1
---------->
DOF2
>>>>>>>>>
TBF1
<---------
GLK1(2)
---------->
DOF2
--------->
MYB52(1)
>>>>>>>>>
TBF1
gtttcaagaatctatacaaaatggttttggtcatcaaaaagattacagaaacataaaaacaaaacaaaactgaaagaagaagaagaagaagaagaatgag
973300
----------->
GT1
<---------
At4g35610
--------->
At4g35610
<---------
ZAT6
<---------
ZAT2
<---------
ANAC55(2)
--------->
ZAT2
--------->
ANAC55(2)
------->
TEIL
--------->
ATHB12
--------->
GLK1(2)
<---------
ANAC58
<---------
ICU4
----------->
TGA1
<---------
ANAC58
<---------
YAB1
----------->
HVH21
<---------
ANAC46
<---------
HSFB2a(2)
--------->
ICU4
--------->
At4g35610
<---------
ANAC46
--------->
HSFB2a(2)
<---------
At4g35610
<---------
At4g35610
<---------
YAB1
<-
tctatctagaaaacagaaacagagcaagagagatgattac
ataagtgttaagctgtctgacgaagctggagaaattgttgtgtttgaaattccttggaag
973400
--------->
ZAT2
------->
TEIL
----
--------->
ANAC46
------
--------->
TOE1(2)
<---------
MYB52(1)
--------->
WRKY18(1)
<------
------>
ZmHOX2a(2)
<-----------
HVH21
<-----------
HVH21
------>
MYB46(1)
<------
ZmHOX2a(2)
--------->
LBD16
--------->
LBD16
------>
MYB83
--------->
ARR14(2)
<---------
LBD16
<---------
LBD16
--------->
AtMYB61
<---------
ARR11(3)
<---------
At4g35610
----------->
HVH21
------->
GAMYB
<---------
ARR14(2)
--------->
ZAT2
--------->
WRKY38(1)
-------->
P
--------->
ARR11(3)
--------->
At4g35610
--------->
At4g35610
--------->
WOX13(1)
--------
YAB1
<------
ZmHOX2a(1)
<---------
ZAT2
--------->
CCA1(2)
--------->
MYB46(3)
tatgattctggcaaactctagaggatcccaaactacgaagctagctccggtcagtccccaagagatgaccgggtcaagagtcgggtcatcaaccaaatca
973500
<---------
ETT(2)
--------->
ETT(2)
<---------
ARR11(3)
<-----------
HVH21
<---------
GLK1(1)
----------->
HVH21
--------->
bZIP60(2)
<---------
GLK1(2)
<---------
ANAC58
--------->
TGA1a
------>
DOF2
--------->
ARR14(2)
<---------
ANAC58
--------->
GLK1(1)
--->
YAB1
--------->
DAG2
--------->
ARR11(3)
--------->
ALFIN1
--------->
O2
<---------
ANAC46
---
ATHB12
---------->
DOF2
--------->
GLK1(1)
<---------
ANAC46
--------->
LBD16
--------->
REM1(2)
aaagtcttggataaaaaaggtggaattggattcccttgtaagatgtctagtggcatgggaagtggtgacccagagaaacccatgtcagtgtcgacgtaga
973600
<---------------
AtSPL3
<---------------
AtSPL8
--------->
MYB52(1)
<---------
HSFB2a(2)
XXXXXXXXXXXXXXXXXXXXX>
MIR447C
<------
ZmHOX2a(2)
<------
MYB46(1)
<-
<-----------
ARR10
<------
MYB83
<----------
DOF2
--
--------->
ARR14(2)
<-----------------
AGL3
<---------
ARR11(3)
<--
<---------
ARR14(2)
================================================
MADS_MADS
<---
--------->
LBD16
--------->
HSFB2a(2)
<---------
AtMYB61
<-----------------
AGL3
----
<---------
LBD16
------>
ZmHOX2a(2)
<--------
P
<---------
GLK1(2)
----------->
GT1
gagacccgggtatatcggatcgtctcgaaacgggtactgaaattggagttggtttagaaacagcatctttttttgggctcat
ttgatatagtagaaaatt
973700
<---------
ICU4
--------->
ICU4
<---------
ANAC58
<---------
ANAC46
--------->
ALFIN1
<---------
ANAC58
--------->
ALFIN1
<---------
ANAC58
<---------
ZAT6
<---------
ANAC58
--------
ANAC46
<---------
ANAC46
------->
ANAC55(2)
<---------
ANAC46
<--------
-------
LBD16
<---------
ANAC58
----------->
GT1
--------
GT1
<---------
ANAC58
----------->
GT1
---------->
DOF2
----->
MYB52(1)
<------------
CBF
<---------
YAB1
<------
ZmHOX2a(1)
<-----------
TBP
tacgggttttagtgagagagagagtgagaaattggggtgtgtgtgataattagggggtttaagagaagaaggatgagaggtttaatggtttataaaggtt
973800
---------
<---------
ALFIN1
<---------
ATERF1(1)
------>
NtERF2
--------->
LBD16
--------->
ANAC46
--------->
ANAC58
--------->
ANAC58
--------->
MYB55(2)
<---------
MYB46(3)
--------
--------->
ALFIN1
------>
NtERF2
<---------
ZAT14
<---------
ANAC58
--------->
DEAR3(1)
--------->
ZAT14
<---------
ANAC58
----------->
HVH21
--------->
MYB52(1)
<---------
LBD16
--------->
ALFIN1
<---------
LBD16
<---------
ETT(1)
--------->
LBD16
<-------
GAMYB
<------
MYB46(1)
<--------
--------->
DREB2C(2)
--------->
GLK1(2)
<------
NtERF2
<------
MYB83
--------->
MYB46(3)
------->
GAMYB
--------->
ARR11(3)
<---------
ORA47(2)
--------->
At4g35610
<----------
ID1
<---------
ARR14(2)
<---------
MYB46(3)
<---------
At4g35610
<------------
AtMYB77
--------->
ARR14(2)
<---------
DEAR3(1)
--------->
MYB52(2)
--------->
DEAR3(2)
--------->
RVE1(1)
<---------
DREB2C(2)
<---------
DEAR3(2)
--------->
MYB46(3)
<------------
CBF
--------->
ALFIN1
<-----------
HVH21
-
TOE2(3)
--------->
MYB52(1)
<---------
At4g35610
<---------
ABI4(1)
<---------
PCF2
<------
NtERF2
tagggaaggaagtaaccgacaaactgtagtcagataattgaaaaaaatctggggaatagagaggcggtggaaatgggtgggtcagttcccgccaccgtgg
973900
----------->
RAV1(1)
--------->
DREB2C(2)
------->
GAMYB
--------->
At1g77200
--------->
DEAR4(1)
<------------
CBF
-------->
HAHB4
<--------
ATHB1
<---------
ICU4
--------->
ATHB51
<---------
ATHB12
--------->
ICU4
<---------
ICU4
<---------
AHL20(2)
<----------
DOF2
--------->
AHL20(2)
<-----------
GT1
<---------
ATHB12
<----------
DOF2
----------->
HVH21
>
DEAR3(1)
--------->
ICU4
--------->
TOE2(3)
--------->
DEAR3(2)
->
LBD16
<-----------
TGA1
<-------
TEIL
>>>>>>>>>
CBP60g
<---------
ATHB51
-------
-
ANAC46
---------->
ID1
<------------
CBF
>>>>>>>>>
SARD1
<---------
ZAT6
--------->
MYB46(3)
atttatctttttcgtcatcatgttccattgattcatcagtttagaagaaatttggaaactttagtgacaaataattgtacaaccgacattgaaattgaaa
974000
--------->
TGA2(2)
<-----------
TGA1
<-----------
HVH21
--------->
ANAC58
--------->
ANAC58
--------->
ANAC46
--------->
ANAC55(1)
=======================
<---------
O2
--------->
bZIP60(2)
--------->
O2
--------->
TGA1a
--------->
bZIP60(1)
<---------
TGA1a
<-----------
STF1
<---------
TCP15(1)
--------->
PCF2
<-----------
HVH21
--------->
TCP20
--------->
TCP15(1)
<---------
PCF2
<---------
DEAR3(2)
<------
MYB83
<------
MYB46(1)
<---------
TCP15(2)
<---------
MYB46(3)
--------->
MYB55(2)
<---------
MYB46(3)
----------->
TGA1
<---------
ALFIN1
--------->
DAG2
<---------
ANAC46
--------->
At4g35610
===================================
bZIP_DOF
<---------
ANAC58
<------
ZmHOX2a(1)
<---------
AtMYB61
====
<---------
ANAC58
--------->
At4g35610
<---------
REM1(1)
----------->
HVH21
<---------
TOE1(2)
----
<-----------
GT1
<---------
At4g35610
<------
MYB46(1)
--------->
ALFIN1
<---------
TCP20
<---------
ARR11(3)
--->
DOF2
<---------
At4g35610
<------
MYB83
---------->
DOF2
--------->
ALFIN1
--------->
ARR11(3)
gttgtttccttgcagcttcacttagctctctctctctgtgatttggtgaaggagagaaagtggtgacgatggtgggtcccacgtcatcttgagatttttg
974100
<-----------------
AGL1
<---------
At4g35610
<---------
ZAT2
<---------
DAG2
--------->
ZAT2
<----------
DOF2
<---------
WRKY12
---------------
<-----------
HVH21
<--------------
--------->
bZIP60(2)
<-----------
GT1
--------->
TGA1a
<---------
ANAC46
--------->
O2
<---------
ANAC58
----------->
GT1
<---------
ZAT2
--------->
PCF5
<----------
DOF2
<-
<------
ZmHOX2a(1)
==================
bZIP_DOF
<---------
ATHB12
<---------
ANAC58
---
=======
bZIP_DOF
<---------
ZAT18
--------->
At4g35610
--------->
PCF2
<---------
DAG2
<--
===================================
bZIP_DOF
<---------
ZAT18
<xxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
------>
DOF2
<---------
At5g28300
<----------
DOF2
<---------
PCF2
<---------
GLK1(2)
----------------
aaaggaggagtgatttagcgcgtttgccaggtcagctttctaatttggaactgggccctcacaaatcactgattcgcttttcgtgtttcctttttcagaa
974200
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AGI:
At5g03720.1
Description:
AT-HSFA3 (Arabidopsis thaliana heat shock transcription factor A3); DNA binding / transcription factor. Identical to Heat stress transcription factor A-3 (HSFA3) [Arabidopsis Thaliana] (GB:Q8GYY1;GB:Q9LZR6); similar to ATHSFA1D (Arabidopsis thaliana heat shock transcription factor A1D), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G32330.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO15967.1); contains InterPro domain Winged helix repressor DNA-binding (InterPro:IPR011991); contains InterPro domain Heat shock factor (HSF)-type, DNA-binding; (InterPro:IPR000232)
Range:
from: 971785
to: 973682
Orientation: Reverse
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.