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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
--------->
LBD16
<-----------
HVH21
<---------
ANAC58
<----------
DOF2
<---------
ARR11(3)
--------->
AHL20(1)
<---------
YAB1
--------->
ARR11(3)
<---------
AHL20(2)
<---------
AHL20(1)
<--
--------->
AHL20(2)
<-----------
ARR10
<-----
<---------
AHL20(1)
--------->
RVE1(1)
-------
--------->
AHL20(1)
--------->
RAP2.6(2)
--------->
CCA1(1)
--------->
ICU4
-------
--------->
YAB1
---------->
DOF2
--------->
AHL20(2)
--------->
ANAC46
<------
---------->
DOF2
<-----------
GT1
----------->
GT1
<---------
ANAC58
--------
acaaaaagaaatataatagaaacaaaactaattaacaaagtcgcaatttgtattgtataaaatatctttccgtctcccgtcatatttgaaaaaaaaaaaa
17439800
<---------
MYB52(1)
----------->
GT1
<---------
ARR14(2)
<---------
ANAC46
--------->
ARR14(2)
<---------
ANAC58
--------->
GLK1(2)
<---------
ANAC58
---------
GT1
<----------
DOF2
----
ICU4
<---------
HSFC1(1)
--------->
AHL20(2)
<---------
ANAC58
-->
AHL20(2)
--------->
HSFB2a(2)
<-----------
GT1
<---------
YAB1
-->
AHL20(1)
<---------
HSFB2a(2)
<-----------
GT1
--------->
YAB1
--------->
ATHB12
---
AHL20(2)
--------->
HSFC1(1)
<---------
AHL20(2)
<---------
ANAC58
<-----------
GT1
-----
->
AHL20(2)
<----------
DOF2
--------->
AHL20(2)
<---------
ANAC46
--------->
AHL20(2)
<---------
WOX13(1)
ttacaaatctgttaattttaaaactttctagaaaaacacaagtatataattttctcttttcgtgcgtgtttgttttaaaataacattgttttgattggcg
17439900
--
--
--------->
AHL20(2)
<---------
AHL20(2)
<---------
ICU4
<--------
ATHB1
--------->
YAB1
<---------
AHL20(1)
<---------
YAB1
<---------
ATHB51
<---------
AHL20(2)
-----
--------->
AHL20(2)
------
--------->
AHL20(1)
<-------
--------->
ANAC55(2)
--------->
ATHB12
--------->
AHL20(2)
<---------
AHL20(2)
--------->
AHL20(2)
<---------
AHL20(2)
--------->
AHL20(2)
<---------
ATHB12
<---------
ARR11(3)
--------->
AHL20(2)
<---------
AHL20(2)
--------->
ICU4
->
NtERF2
<-----------
GT1
<---------
CCA1(2)
--------->
ANAC46
<---------
AHL20(1)
--------->
YAB1
actcaacatattttagcatttacatatttctgcatatattaaatgatttataaactcaactatagattaaaatataatttgacatctaataattttaaca
17440000
--------->
AHL20(2)
------->
AHL20(2)
--------->
AHL20(2)
------->
YAB1
<---------
AHL20(2)
---->
YAB1
<---------
YAB1
<----------
DOF2
----
--->
ZAT6
--------->
AHL20(2)
--------->
DAG2
--------->
CCA1(2)
<----
----
GT1
<---------
AHL20(2)
---------->
DOF2
---------->
DOF2
<----------
DOF2
ataatataaaatatgagatttataaattacgaatataaatattcaagggagagaaaaagtagaacataattcaaaagataagactttttagactttttta
17440100
------
<-----
-------
<---------
WOX13(1)
<---------
HSFB2a(2)
<------
<---------
YAB1
<---------
ICU4
<---------
HSFC1(1)
<------
<---------
AHL20(1)
--------------->
AGL15
<---------
AHL20(2)
--------->
AHL20(1)
<---------
ARR11(3)
<---------
YAB1
<---------
ARR11(3)
----------->
GT1
--------->
HSFB2a(2)
--------->
YAB1
-------->
CBF
--------->
ICU4
---------->
DOF2
--------->
ARR11(3)
<---------
MYB52(1)
-------
GT1
----------->
GT1
---------->
DOF2
---------->
DOF2
--------->
HSFC1(1)
<---------
YAB1
acaatatttttgatggataaaaattattcaaaagagaagaaagtaagaagaaaagatgtttctgagaatt
tctagaaacagcatccgtttttataattta
17440200
------>
MYB46(1)
------>
MYB83
--------->
ZAT14
----------->
RAV1(1)
<---------
ANAC55(2)
<------
ZmHOX2a(1)
------>
ZmHOX2a(1)
--------->
ANAC46
<---------
TOE2(3)
<---------
ARR11(3)
--------->
ANAC55(2)
--->
AHL20(2)
=======================
HOX2a_HOX2a
--------->
ANAC55(1)
----
AHL20(2)
<------
MYB46(1)
--------->
ARR11(3)
--------->
HSFC1(2)
<--------
-->
AHL20(2)
<------
MYB83
====================
HOX2a_HOX2a
<---------
HSFB2a(1)
<---------
AHL20(1)
---
AHL20(2)
--------->
MYB59
------>
ZmHOX2a(2)
<---------
HSFC1(2)
--------->
AHL20(2)
---
AHL20(1)
<--------
P
--------->
ARR11(3)
--------->
TOE2(3)
--------->
ZAT6
--------->
AHL20(1)
attttcttacaaaggtaggaccaacatttgtgatctataaatcttcctactacgttatatagagacccttcgacataacacttaactcgtttatatattt
17440300
------>
NtERF2
--------->
LBD16
--------->
ANAC55(2)
--------->
ANAC58
--------->
ANAC55(1)
<-----------
GT1
<---------
DEAR3(1)
---------->
DOF2
<---------
AHL20(2)
<---------
LBD16
--------->
AHL20(2)
<----------
DOF2
--------->
At4g35610
--------->
YAB1
<---------
AHL20(2)
----------->
ARR10
<---------
ANAC58
--------->
ANAC46
<---------
AHL20(2)
--------->
ANAC46
<---------
ANAC58
--------->
ANAC58
--------->
AHL20(2)
<---------
LBD16
<------
NtERF2
<-----------
GT1
--------->
ANAC58
<----------
DOF2
<---------
DAG2
<---------
GLK1(2)
<---------
DEAR3(1)
-
AHL20(2)
<-------
TEIL
--------->
AHL20(2)
<-----------
GT1
--------->
ANAC58
<---------
AtMYB61
gttttacttgttttgcacatacacacaaaaataaaaaagactttatatttatttactttttaatcacacggattagctccggcgaagtatggtcgtcgtc
17440400
------>
ZmHOX2a(2)
=============================
HOX2a_HOX2a
==============================
HOX2a_HOX2a
<---------------
AGL15
<------
ZmHOX2a(2)
--------------->
AGL15
<---------
ARR11(3)
--------->
TOE1(3)
--------->
ARR11(3)
--------->
TOE2(3)
--------->
ANAC58
<-----------------
AGL3
<---------
ARR14(2)
----------------->
AGL3
<-----------
ARR10
----------------->
AG
--------->
ANAC58
<-----------------
AG
--------->
ANAC46
----------------->
AGL1
--------->
HSFB2a(1)
<--
----------------->
AGL2
<---------
HSFC1(2)
<--
<-----------------
AGL1
<---------
HSFB2a(1)
<--
<-----------
GT1
------>
MYB46(1)
<--------
<---------
GLK1(2)
------>
MYB83
--------->
ARR14(2)
<----------
DOF2
--------->
ARR11(3)
--------->
AtMYB61
<---------
ANAC58
--------->
YAB1
------>
ZmHOX2a(1)
--------->
MYB52(1)
<---------
MYB52(1)
<---------
ANAC58
<---------
ICU4
=====================================
HOX2a_HOX2a
------>
ZmHOX2a(1)
<X
------>
ZmHOX2a(1)
<-----------------
AGL2
--------->
HSFC1(2)
<---------
ANAC46
<---------
ANAC46
ttcatcttcttcctccatcatcagatttttccttaa
atggaagaaaccaaacgaaactccgatcttctccgttctcgtgttttcctctctggcttttatt
17440500
<---------
DAG2
<----------
DOF2
<---------
ANAC58
-------
ANAC58
--------->
ZAT14
-------
ANAC46
--------->
DEAR3(1)
<---------
GLK1(2)
-------
ANAC58
<---------
At5g28300
<---------
ANAC46
<----------
DOF2
-
YAB1
<-----------
GT1
--------->
MYB52(2)
<----------
DOF2
<<<<<<<<<
TBF1
XXXXXXXXXXXXXXXXXXX
MIR832-3P
<---------
ANAC58
<----------
DOF2
<---------
ATHB12
<-
gctgggattgggaatttctcaccgctctcttgctttttagttgctga
ttctttttccttcgactttctatttccaatctttcttcttctctttgtgtatt
17440600
<------
NtERF2
<---------
ANAC46
--------->
RAP2.3(2)
<---------
RRTF1(1)
<---------
RAP2.6(1)
<---------
ATERF1(1)
<---------
DEAR4(2)
<---------
ERF1
------>
NtERF2
<---------
DEAR3(2)
<---------
RAP2.3(1)
<---------
RAP2.3(2)
<---------
DEAR3(1)
--------->
DEAR3(1)
<---------
RAP2.3(3)
<---------
RRTF1(3)
<---------
RRTF1(2)
<---------
ABI4(1)
<------
NtERF2
--------->
ATERF1(1)
------>
NtERF2
<---------
ATERF1(1)
<---------
RRTF1(1)
<--------
<---------
RAP2.3(1)
<---------
ANAC46
<---------
ERF1
--------->
ATERF1(1)
<---------
RAP2.3(3)
<------
NtERF2
<---------
RAP2.3(2)
--------->
DEAR4(2)
<---------
RRTF1(2)
--------->
RAP2.3(1)
<---------
O2
--------->
ABI4(2)
<---------
bZIP60(1)
------>
NtERF2
<---------
RRTF1(3)
<---------
ATERF1(1)
<---------
ATERF1(2)
--------->
ERF1
--------->
ATERF1(2)
--------->
RAP2.3(1)
<---------
ANAC46
--------->
RRTF1(1)
<---------
DEAR3(1)
--------->
ATERF1(1)
--------->
At4g35610
<---------
RAP2.3(1)
<---------
At4g35610
<---------
ATERF1(1)
------>
NtERF2
--------->
ATERF1(1)
<---------
DEAR3(1)
<---------
RAP2.3(3)
------>
NtERF2
<---------
RAP2.3(2)
<---------
ARR11(3)
<---------
RAP2.6(2)
--------->
ICU4
<---------
RAP2.3(1)
--------->
RAP2.6(3)
---------->
DOF2
--------->
DEAR3(1)
<---------
At4g35610
<------
NtERF2
--------->
ARR14(2)
<------
NtERF2
----------->
HVH21
<------
ZmHOX2a(2)
--------->
LBD16
<---------
DEAR3(1)
<---------
ARR14(2)
--------->
DAG2
--------->
MYB52(1)
------>
NtERF2
<---------
RAP2.3(2)
---------->
DOF2
----------->
HVH21
--------->
RRTF1(1)
--------->
RAP2.6(1)
--------->
AHL20(2)
----------->
TGA1
<---------
ORA47(2)
--------->
LBD16
--------->
AHL20(2)
--------->
At4g35610
--------->
RAP2.3(1)
--------->
RAP2.3(2)
<---------
YAB1
----------->
GT1
--------->
DEAR3(1)
<---------
RAP2.6(2)
<---------
LBD16
---
--------
GLK1(2)
<-----------
RAV1(1)
<---------
LBD16
<-----------
HVH21
--------->
ARR11(3)
---
agattatttttagttttatttttctgtggtaaaataaaaaaagttcgccggag
atgacggctgtgacggcggcgcaaagatcagttccggcgccgttttt
17440700
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AGI:
At4g36988.1
Description:
CPuORF49 (Conserved peptide upstream open reading frame 49)
Range:
from: 17440171
to: 17442145
Orientation: Forward
Links:
TAIR
MIPS
AGI:
At4g36990.1
Description:
HSF4 (HEAT SHOCK FACTOR 4); DNA binding / transcription factor. Identical to Heat stress transcription factor B-1 (HSFB1) [Arabidopsis Thaliana] (GB:Q96320;GB:O23186); similar to AT-HSFB2B (Arabidopsis thaliana heat shock transcription factor B2B), transcription factor [Arabidopsis thaliana] (TAIR:AT4G11660.1); similar to heat shock factor 4 [Brassica rapa] (GB:ABV89640.1); contains InterPro domain Winged helix repressor DNA-binding (InterPro:IPR011991); contains InterPro domain Heat shock factor (HSF)-type, DNA-binding; (InterPro:IPR000232)
Range:
from: 17440171
to: 17442145
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.