Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                --------->ANAC46                             ------>NtERF2                             <---------At4g35610                             --------->At4g35610     <---------ZAT18                             <---------LBD16         --------->ZAT18                             --------->LBD16      ---------->DOF2                           <---------LBD16  <---------SPL7                          ------>ZmHOX2a(1)<---------ANAC46                         <---------ALFIN1  <---------ANAC58                      <---------ALFIN1     <---------ANAC58                     <---------At4g35610  <------NtERF2  <----------DOF2                 <-----------HVH21       <------------------SPL14                <----------DOF2          <---------ORA47(2)          ----------->GT1      <------NtERF2<-----------GT1      <---------DEAR3(1)        <------NtERF2 --->WOX13(1)<---------ARR11(3)         <---------RAP2.3(3) --------->HSFB2a(2)       --------->ZAT14 --YAB1      --------->ARR11(3)--------->LBD16--------->SPL7<---------HSFB2a(2)  <---------RAP2.6(3)-   tcttcggcatcgggacatctttcacctcctccgcggaaatagtcggcgtacggagagcgcttctagtcggagagagaaatagccgtagtgaagacgatga  13336000                                          <------NtERF2                                         <------NtERF2                                         --------->LBD16                                        <---------DEAR3(1)                    --------->ANAC58   <---------LBD16                    --------->ANAC58--------->WRKY12                             <---------ARR14(2)               --------->SPL7       --------->WRKY38(1)                          --------->ARR14(2)              <---------MYB52(1)   <---------MYB52(1)                            --------->GLK1(2)              <-----------HVH21   <-------GAMYB                                 <---------GLK1(2)         <-----------GT1         <---------MYB46(3)  --------->MYB46(3)    --------->At5g28300        <-----------GT1          --------->MYB52(2) -------->P    ------>ZmHOX2a(1)  ----------->GT1 ------>TEIL <---------SPL7     <-------TEIL       --------->WOX13(1)     ----------->GT1   <--------   cgaacgtttatttcccgttcgcagggaaaccaagttcgttggccggagcgaatcaaccaatgtaaatcctatagaacggtgagaatctggtgaaacatta  13336100                                         <---------ANAC46                                        <------NtERF2                                  ---------->DOF2    --------->ANAC46            <---------At4g35610                               --------->ANAC58--------->HSFB2a(1)        <----------DOF2                           --------->ANAC58    <---------HSFC1(2)         --------------------->WRI1                      >>>>>>>>>TBF1   <---------DEAR3(1)               <---------ARR11(3)                <-------TEIL   --------->ANAC58--------->HSFC1(2)  <---------ANAC58             <---- -ICU4 --------->MYB52(1)  --------->ANAC58    <---------HSFB2a(1) <---------ANAC58     <---------ANAC46   ctggagaagtaacagaggttcgaagaagaacgtaagcaaagcggcgagaaggttccctccatttttgtttcgagctctttttctgcttcgccgtgttagt  13336200                                                            ----------->GT1                                                            <------ZmHOX2a(1)                    --------->LBD16                       ------------------------>ANAC81                   --------->ANAC46                     ---------->DOF2                   --------->At4g35610                   --------->TOE2(3)               --------->LBD16                        <---------At4g35610                   ----------->GT1                 ----------->GT1                       --------->GLK1(2)                --------->ARR14(2)                --------->ANAC46                  ---------->DOF2--                <---------ARR14(2)                --------->HSFB2a(2) xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)               <---------GLK1(1)                 <---------LBD16     xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)               --------->GLK1(1)             --------->ARR11(3)     xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)           <---------TOE2(3)                 <---------ARR11(3)     xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)          --------->MYB52(1)           *TSS --------->RVE1(1)      xxxxxxxxxxxxxxxxxxx>smallRNA(si3)       --------->At4g35610 ----------->GT1  --------->CCA1(1)------------------------>ANAC81      --- -----ZAT6<---------DOF5.7(2)       <----------ID1<---------HSFB2a(2)xxxxxxxxxxxxxxxxxxxxx>smallRNA(si3)   gtgagaagcagataacgatatccgtaaaattgaaaaaaaaaacaaaatatctccggaaaaaaggattaaaaaaaaaaaaaaaaaaaaaaagaagctgaaa  13336300                                                                                                    <                                                                                                    -                                                                                                    <                                                                                                    -                                                                                                    <                                                                                                    <                                                                                                    -                                                                                                    <                                                                                                    <                                                                                                    <                                                                                                   <x                                                                                                   <x                                                                                                   <x                                                                                                   --                                                                                                   <x                                                                                                   <x                                                                                                   <x                                                                                                  <xx                                                                 <-----------HVH21                <xx                                                                <xxxxxxxxxxxxxxxsmallRNA(se3)     <xx                                                               --------->TOE2(2)                  <xx                                                               --------->TOE1(2)                  <xx                                                       <xxxxxxxxxxxxxxxxsmallRNA(se3)             ---                                                     <xxxxxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)    <xxx                                                    <xxxxxxxxxxxxxxxxsmallRNA(s)                 ----                                                   <xxxxxxxxxxxxxxxxsmallRNA(s)                  <xxx                                                  <xxxxxxxxxxxxxxxxsmallRNA(s)                  <xxxx                                             <-----------------AGL1                             <xxxx                                             <---------ANAC46 ----------->RAV1(2)               <xxxx                                             ----------------->AGL1                             <xxxx                                            <xxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)                <xxxxxx --------->ANAC46                           <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(l2)              <xxxxxx --------->ANAC58             --------->ANAC58  <xxxxxxxxxxxxxxxxsmallRNA(s)          --------->ANAC46 --------->ANAC58             --------->ANAC58  <---------ARR14(2)----------->HVH21   --------->ANAC58 ------->ANAC46             ---------->DOF2--------->ZAT18------>ZmHOX2a(2)           --------->ANAC58 ------>TOE1(2)      --------->YAB1     <-----------RAV1(1)  ------->TEIL         <xxxxxxxxxxxxxxxxxx   cacacgacaacgttttagtctgatcaaaatgaaagccaaaaaatgtggcctatacagggatcgaacctgtgaccttcgcgttattagcacgacgctctaa  13336400              <---------ZAT18              --------->ZAT18            --------->ANAC58     --------->At4g35610     <---------At4g35610    <xxxxxxxxxxxxxxxsmallRNA(se3)    <xxxxxxxxxxxxxxxsmallRNA(fl3)    <xxxxxxxxxxxxxxxsmallRNA(si3)    <xxxxxxxxxxxxxxxsmallRNA(le3)   <xxxxxxxxxxxxxxxxsmallRNA(se3)   <xxxxxxxxxxxxxxxxsmallRNA(i)   <xxxxxxxxxxxxxxxxsmallRNA(fl3)   <xxxxxxxxxxxxxxxxsmallRNA(s)  <xxxxxxxxxxxxxxxxsmallRNA(s)  <xxxxxxxxxxxxxxxxxsmallRNA(fl3)  <xxxxxxxxxxxxxxxxxsmallRNA(se3)  <xxxxxxxxxxxxxxxxxsmallRNA(si3) <xxxxxxxxxxxxxxxxxxsmallRNA(si3) <xxxxxxxxxxxxxxxxxxsmallRNA(se3) <xxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxxxxxsmallRNA(s2) ---------->RAV1(2) xxxxxxxxxxxxxxxxxxxsmallRNA(i2) ----->MYB46(1) xxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxxxxsmallRNA(se3) ----->MYB83--------->ANAC58 xxxxxxxxxxxxxxxxxxxsmallRNA(si3) xxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxxxxsmallRNA(i2) xxxxxxxxxxxxxxxxxxxsmallRNA(si3) ------->MYB52(1) xxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxxxxxsmallRNA(s2) xxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxxxxxsmallRNA(fl3) xxxxxxxxxxxxxxxxxxxsmallRNA(i2) xxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxxxxxxxxxxxxxxxsmallRNA(se3) xxxxxxxxxxxxxxxxxxxsmallRNA(si3) ---->GAMYB --------->ANAC46 xxxxxxxxxxxxxxxxxxxsmallRNA(si3)          <---------CCA1(1) ----->MYB46(3)                            <---------RVE1(1) xxxxxxxxxxxxxxxxxxxsmallRNA(i2)          <---------ARR11(3)     <------------CBF xxxxxxxxxxxxxxxxxxxsmallRNA(s2)          --------->ARR11(3)   <---------TOE2(2) xxxxxxxxxxxxxxxxxxxsmallRNA(si3)       ----------->ARR10      <---------TOE1(2) xxxxxxxxxxxxxxxxxxxsmallRNA(se3) <---------ZAT18           <---------ANAC58                      --- xxxxxxxxxxxxxxxxxxxsmallRNA(i2)  --------->ZAT18           <---------ANAC46                      <-- xxxxxxxxxxxxxxxxxxxsmallRNA(si3) <---------ZAT14           <---------ANAC58 ----------->HVH21    --- xxxxxxxxxxxxxxxxxxxsmallRNA(se3) --------->ZAT14      <---------GLK1(2)--------->GLK1(2)         --- xxsmallRNA(fl3)   *TSS       --------->ALFIN1     <---------LBD16   <---------YAB1     <----------DOF2   ccaactgagctaataggccactacgtttctaagtggtgcacttagatatttctctcggaatttcgtagattgtgattctgtgacagttttctttcaagac  13336500          ----------->RAV1(1)         <----------ID1        --------->ZAT18 ------>ANAC58 -------ANAC55(2)          --------->CCA1(2)           <---------ARR11(3)                   <-------- ------>ANAC58            --------->ARR14(2)           --------->ARR11(3)                   <-------- ------>ANAC55(2)         <---------ARR14(2)         ----------->GT1    <-----------GT1     ---------   aagtatcaagtgcaacaaaaaaacatcggatatgggactcgtactcgtgttcatgaagataataaactctcatataactacttgactaaaacgatatatt  13336600                                                                                              <------                                                                                          xxxxxxxxxxx                                                                                         ------->GAMYB                                                 <---------TOE2(3)                <xxxxxxxxxxxxxxxxxx                                            --------->ATHB12                    <xxxxxxxxxxxxxxxxsmallRNA(s)                                           --------->ICU4                      <xxxxxxxxxxxxxxxxxxxxx                                           <---------YAB1                      <xxxxxxxxxxxxxxxxxxxxx                                         <---------ANAC55(2)      <---------TOE2(3)   <---------DOF5.7(2)                                         --------->ANAC55(2)     --------->MYB52(1) --------->DOF5.7(2) -AHL20(1)                          <---------ICU4               <-----------GT1xxxxxxxxxxxxxxxxxxxxx -ARR11(3)                          --------->YAB1             <---------MYB52(2) <---------ZAT6 >ARR11(3)                          --------->ANAC46   <-----------GT1      <-----------GT1 ---------   cgtatgcattagaaaaaacaattgtatataactaataaacatcacatgattaagttttaactgcaaataacgattttgttaccactgttaacgctcgtta  13336700                                       --------->AHL20(2)                                          <-                                      <---------AHL20(1)                                          ---                                      --------->AHL20(1)                                      -------                                      --------->ARR11(3)                                      <------ ---MYB52(1)                          <---------ARR11(3)                      xxxxxxxxxxxxxxxxxxxxxxx xxxxx>smallRNA(i)                 --------->AHL20(2)                       <xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3) xxxxxsmallRNA(fl3)               --------->YAB1                  --------->ANAC55(2)       <xxxxxxxx xxsmallRNA(fl3)                 --------->AHL20(2)        --------------->AGL15           --------->ANAC58 xxsmallRNA(si3)           --------->AHL20(2)              <---------------AGL15           --------->ANAC58 xx>smallRNA(i2)          --------->AHL20(2) ---------->DOF2     --------->MYB59          <---------LBD16 -->GT1               --------->AHL20(2)   <---------AHL20(2)    <---------TOE2(3)       <xxxxxxxxxxx   attcggatgtctgattttgtcaaaaaaaataaaaaataaaaatatttaaaagacataaaaactaatttaggtattttggacaaatttagtagcacggata  13336800                          <---------ARR11(3)             <---------YAB1           --------->AHL20(2)       xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(le3)           --------->TOE2(3)      <xxxxxxxxxxxxxxxxxxxxxxsmallRNA(le3)             <---------MYB59 --------AHL20(2) <---------AHL20(2)                 ------>MYB83 ------>AHL20(2) --------->AHL20(2)                 --------->ORA47(1)                              - -->ARR14(2)--------->AHL20(2)      <----------DOF2--------->DEAR3(1)                               < ---ARR14(2)<---------AHL20(2)    <---------At4g35610------>MYB46(1)                  <----------DOF2 >smallRNA(fl3)  <---------AHL20(2) <---------DAG2--------->DEAR3(2)               <---------ARR11(3) xxxxxxxxxxxxxxxsmallRNA(se3) <-----------GT1     --------->MYB46(3)   <---------AHL20(2)           < xxxxxxxxxxxxsmallRNA(le3)--------->ARR11(3)   ---------->DOF2         --------->AHL20(2) <----------   ttaaataggcaaattaaaattaaatggagatttttcagcttttttcccataaaccgacctaaataactcgaatataaattgtcatgaccttttaacatcg  13336900  Previous    Next  AGI:  At4g26370.1    Description:  antitermination NusB domain-containing protein. similar to unnamed protein product [Vitis vinifera] (GB:CAO22120.1); contains InterPro domain NusB/RsmB/TIM44; (InterPro:IPR006027) Range:  from: 13333733    to: 13336239    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At4g26375.1    Description:  pre-tRNA. tRNA-Ile (anticodon: AAT) Range:  from: 13336346    to: 13336419    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.