Search
Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
Go to graphical and table display
1 10 20 30 40 50 60 70 80 90 100
--------->
CCA1(2)
<---------
ANAC58
<------
ZmHOX2a(2)
----------->
GT1
--------->
ARR14(2)
<---------
ANAC58
--------->
ARR11(3)
<---------
ANAC46
--------->
ARR11(3)
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
----------->
GT1
<---------
ARR11(3)
--------------->
AGL15
------->
TEIL
<---------
ARR14(2)
<---------------
AGL15
--------->
GLK1(2)
--------->
AGP1
--------->
ARR14(2)
<------
ZmHOX2a(1)
<---------
ARR11(3)
<-------
<---------
ARR14(2)
<---------
ZAT14
<---------
ARR14(2)
--------->
STY1(2)
------>
ZmHOX2a(1)
<---------
ZAT18
--------->
ARR14(2)
------>
ZmHOX2a(1)
<
------->
DOF2
------>
ZmHOX2a(1)
--------->
ZAT18
--------->
ARR11(3)
===============
HOX2a_HOX2a
taaagtctcttatcctcctatccacattgagtgaaacatgcctagagtgctcatgaggatgaagaacctggttaaaatctcctagcaagatccaaggtct
13332000
----------->
RAV1(1)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
<xxxxxxxxxxxxxxxx
smallRNA(s)
--------->
AtMYB61
<---------
ARR14(2)
--------->
At4g35610
--------->
ARR14(2)
<---------
HSFC1(2)
---------->
TaMYB80
--------->
ANAC58
------>
ZmHOX2a(2)
<------
NtERF2
--------->
ANAC58
<---------
ARR11(3)
--------->
RAP2.6(2)
--------->
LBD16
--------->
ARR11(3)
--------->
WRKY12
<---------
LBD16
<xxxxxxxxxxxxxxxx
smallRNA(i)
--------->
WRKY38(1)
----------->
HVH21
---------->
DOF2
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
---------->
DOF2
--------->
HSFC1(2)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
--------->
YAB1
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
--
ARR11(3)
<---------------------
WRI1
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<----------
TaMYB80
---------
AHL20(2)
-------->
P
--------->
ZAT14
<----------
DOF2
<---------
MYB52(1)
<xxxxxxxxx
attaaaagtgaccggagaagctaccaaagcagtgatctctctccataactcttttctcttatcatcttcgttggccgcatataccacagagataacaatc
13332100
<xxxxxxx
<-------
<-------
<-------
--------->
TOE2(3)
------->
GAMYB
--------->
TOE1(3)
xxxxxxxxxxxxxxxxx
--------->
AtMYB61
<xxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
-------->
P
<xxxxxxxxxxxxxxxxxx
----------->
RAV1(1)
<xxxxxxxxxxxxxxxxxx
--------->
ATHB12
xxxxxxxxxxxxxxxx>
smallRNA(i)
<-------
--------->
At4g35610
------->
GAMYB
<---------
TCP15(1)
----------->
RAV1(2)
--------->
MYB46(3)
<xxxxxxxxxxxxxxxxxx
============================
RAV
----------->
RAV1(1)
<xxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
--------->
PCF2
--------
--------->
ANAC46
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
<xxxxxxxxxxxxxxxxxxx
--------->
ANAC58
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
<xxxxxxxxxxxxxxxxxxx
--------->
ANAC58
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
<xxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxx>
smallRNA(s)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
--------
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
<---------
MYB111(2)
<xxxxxxxxxxxxxxxxxxx
------->
TEIL
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
--------->
TCP15(1)
--------->
ARR14(2)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
<---------
PCF2
<--------
<---------
GLK1(2)
<---------
At4g35610
--------->
YAB1
<-----------
HVH21
<
---------->
DOF2
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
xxxxxxxxxxxxxx
smallRNA(i2)
xxxxxxxxxxxxxxxx>
smallRNA(s)
--------->
YAB1
--------->
MYB46(3)
xxxxxxxxx
caagtgcgagaattagggaaaagaacctcgcaagtgatcatctgcaacgatttggcaacaataacaacctcaacagatgggtcccataacacccatatct
13332200
------->
PIF5
<-------
MYC4
------->
MYC4
<-------
PIF5
<-------
MYC2
<-------
PIF4
------->
PIF4
<-------
MYC3
------->
MYC3
------->
MYC2
<---------
ANAC58
<---------
CCA1(2)
--------->
ANAC55(2)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
<---------
ANAC55(2)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
<---------
ANAC58
xxxxxxxxxxxxxxx
smallRNA(fl3)
--------->
TGA1a
----
ARR10
<----------
DOF2
--
ARR11(3)
--------->
ZAT2
==============
bZIP_DOF
--
ARR11(1)
--------->
At4g35610
<---------
ANAC58
xxxxx>
smallRNA(le3)
<---------
ZAT2
<---------
ANAC58
xxxxx
smallRNA(si3)
<---------
At4g35610
<--------
P
xxxx
smallRNA(fl3)
<------
NtERF2
==================
MYC_MYB
xxxxx
smallRNA(le3)
----------->
RAV1(1)
xxxxxxxxxxxxxxxx>
smallRNA(i)
--
ARR14(2)
<xxxxxxxxxxxxxxxx
smallRNA(s)
===================
MYC_MYB
xxxx
smallRNA(se3)
<xxxxxxxxxxxxxxxx
smallRNA(i)
<---------
ANAC58
xxx
smallRNA(s)
--------->
ANAC46
<---------
ANAC58
-
->
ARR11(3)
------>
MYB46(1)
<-------
GAMYB
<
xxx
smallRNA(fl3)
-------->
P
<---------
AtMYB61
<
xxxx
smallRNA(se3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
<---------
MYB52(1)
--
xxx
smallRNA(le3)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
=======================
bZIP_DOF
->
ARR14(2)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
------>
ZmHOX2a(1)
<---------
ANAC58
xxxx
smallRNA(si3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
<----------
DOF2
<---------
ANAC58
-
CCA1(2)
--------->
TOE2(3)
--------->
AtMYB61
---------->
ID1
<---------
TGA1a
--
xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
------>
MYB83
<-----------
GT1
<---------
MYB46(3)
-----
xxxxxxxxxxxxxx>
smallRNA(le3)
--------->
MYB46(3)
--------->
YAB1
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(i2)
tccctaaatctgagaaaccatagttctcatcaaaaaaccaaccaggcagcagagcattaataaacttcttgtcctttggttgcttcacgtgcttctctat
13332300
<
----------------->
AGL3
--------->
AHL20(2)
------>
NtERF2
----------->
RAV1(1)
----->
NtERF2
----------->
GT1
*
TSS
<---------
AHL20(2)
---------
RAP2.3(1)
<---------
YAB1
----------->
GT1
--------->
KAN4(2)
<----
---------
ATERF1(1)
<---------
MYB52(1)
<---------
HSFB2a(1)
<--
------->
ANAC58
---------->
DOF2
<------
ZmHOX2a(1)
--------->
HSFB2a(1)
---
------->
ANAC58
--------->
TOE1(3)
<---------
RAP2.6(3)
<------
ZmHOX2a(1)
-----
------>
HVH21
--------->
TOE2(3)
------------>
MYB.PH3(1)
--------->
AtMYB61
<---------
AHL20(1)
gacgcctccaaaaataggcctattgaccttaaaccattttttaaagccgttacgatgactaggaatgttaaaaccacaggacat
tccaacaaaaaatttg
13332400
--------->
YAB1
<---------
ICU4
<---------
ZAT14
<---------
AHL20(2)
--------->
ZAT14
---------
ZAT14
--------->
HSFB2a(2)
--------->
AtMYB61
-----------
AtSPL8
<---------
HSFB2a(2)
<-------
TEIL
-------
ZAT18
--------->
TOE2(3)
--------->
ARR11(3)
<---------
GLK1(2)
<----------
DOF2
------>
ZAT14
--------->
TOE1(3)
<---------
ARR11(3)
--------->
ARR14(2)
---------->
AtSPL8
<----------
DOF2
<-----------
GT1
<---------
ARR14(2)
tgtacacatattaatgaccttaaaccattctttatagaagagaccttgattttacttactcttgctccaagattcaccaaaactacactttctcaatact
13332500
>>>>>>>>>
ARR1
<---------
GLK1(2)
------>
NtERF2
--------->
LBD16
--------->
HSFB2a(1)
<---------
HSFC1(2)
<---------
HSFB2a(1)
<---------
ARR11(3)
--------->
bZIP60(2)
--------->
ARR11(3)
<------
MYB46(1)
--------->
ANAC58
---------->
DOF2
>>>>>>>>>
ARR2
<---------
WOX13(1)
<---------
ICU4
--------->
HSFB2a(2)
<------
MYB83
--------->
ATHB12
--------->
TOE1(2)
<---------------
AGL15
<---------
YAB1
--------->
WRKY18(1)
--------->
ANAC46
--------------->
AGL15
<---------
TOE2(3)
--------->
WOX13(1)
--------->
ANAC58
===========================================================================================
<-----------
GT1
<----------
DOF2
--------->
MYB59
<---------
At4g35610
------->
TEIL
--------->
AHL20(2)
--------->
HSFC1(2)
<---------
MYB52(1)
<---------
YAB1
----------->
RAV1(1)
agtcattttatactcattaaagaactttcccgactaagattgtctgtttggtcaatctatttagatgattggattccacgacatatgtaccagcgagtga
13332600
<-------
<-------
<-------
------>
NtERF2
<---------
YAB1
--------->
At4g35610
<---------
MYB46(3)
--------->
ARR14(2)
--------->
ANAC58
----------->
RAV1(2)
<---------
ARR14(2)
--------->
ANAC58
<---------------
AGL15
<---------
MYB52(1)
--------->
YAB1
--------->
At4g35610
<----------
DOF2
<---------
AtMYB61
--------->
LBD16
<---------
ICU4
<---------
ZAT2
---
--------------->
AGL15
<---------
LBD16
<---------
ZAT18
--------->
ZAT2
<--
<-----------------
AGL3
<---------
AHL20(2)
--------->
ZAT18
<---------
At4g35610
=================
MADS_MADS
<-----------
GT1
<---------
TOE2(3)
<---------
ATHB12
<--------
P
<---------
At4g35610
tgctctttttttggtacctggtggttctatttacttccggttatgttaagaattttgtgaactaatcatgttttttttgggttagctcgcctctgccgtg
13332700
<---------
TOE2(3)
----------->
HVH21
<---------
TOE1(3)
--
ANAC58
--------->
MYB59
--
ANAC58
--------->
AHL20(2)
-
--
ANAC46
<---------
AHL20(2)
<--
------>
HSFB2a(2)
<---------
TOE2(3)
<--
-------
HSFB2a(2)
<---------
ZAT6
<-------
TEIL
<---------
AHL20(2)
---
ctcgaagtctgactggtttggctagagttactgaaacagagtttatttgctattgtttaaaatgtttaggctcatctaagattaatttaggttgaactaa
13332800
<---------
YAB1
------>
ZmHOX2a(2)
--------->
ICU4
<------
ZmHOX2a(2)
-------->
HAHB4
<---------
ARR14(3)
--------->
YAB1
--------->
ARR11(3)
<---------
ICU4
--------->
ARR14(2)
<---------
TOE2(3)
--------->
ICU4
<---------
ARR11(3)
------>
ZmHOX2a(1)
<---------
ATHB51
--------->
AGP1
--------->
LBD16
--------->
YAB1
--------->
ARR14(3)
<---------
LBD16
--------->
AHL20(2)
----------->
GT1
<---------
ARR14(2)
----------->
RAV1(2)
<---------
AHL20(2)
<--------
P
--------->
GLK1(1)
-------->
ARR11(3)
<---------
AHL20(2)
<------
MYB83
<---------
GLK1(1)
-------
AHL20(1)
--------->
AHL20(2)
<------
MYB46(1)
<------
NtERF2
<----
-------
ARR11(3)
<---------
AHL20(1)
--------->
MYB111(1)
<xxxxxxxxxxxxxxxx
smallRNA(le3)
------>
ARR11(3)
--------->
AHL20(1)
<---------
AtMYB61
<xxxxxxxxxxxxxxxxxxx
tatatcctggagagtttatggatgaactaatttaataatgag
tatcaaatatgagttggtagataaacagtagaaaactaaggcctcagagatcttggtg
13332900
Previous
Next
AGI:
At4g26360.1
Description:
transposable element gene. non-LTR retrotransposon family (LINE), has a 4.9e-40 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus)
Range:
from: 13328772
to: 13332384
Orientation: Reverse
Links:
TAIR
MIPS
AGI:
At4g26365.1
Description:
snoRNA. snoRNA
Range:
from: 13332843
to: 13332920
Orientation: Reverse
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.