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Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<----------
DOF2
<---------
ALFIN1
--------->
ARR14(2)
<-----------
ARR10
------>
MYB83
------>
MYB46(1)
---------
<---------
MYB111(1)
<----------
DOF2
<---------
AHL20(1)
<---------
ARR14(2)
---------
---------->
DOF2
<----------
DOF2
<---------
At4g35610
<---------
DAG2
--
<----------
DOF2
<-----------
GT1
--------->
ARR11(3)
<---------
ARR11(1)
<--------
<---------
DAG2
<-----------
GT1
--------->
AHL20(2)
<---------
MYB59
<-----------
GT1
gaaaattccatacttttttaaaaagacaatttgttttatcactttagtttttttatatattcagcgtctaccaaatctacacttttttttctttctcgat
13038000
<-
<--
<---------
ANAC55(2)
<--
--------->
ANAC55(2)
<---------
AHL20(2)
---
------>
AGL15
<---------
ANAC46
<---------
CCA1(1)
<------
MYB46(1)
>
HSFB2a(2)
<---------
ANAC58
<---------
RVE1(1)
<------
MYB83
--------->
GT1
<-----------
HVH21
<---------
ARR11(3)
<---------
MYB46(3)
-------
AGL15
<---------
ANAC58
<---------
YAB1
--------->
ARR11(3)
----------->
GT1
ttagttaatcttcgttcttgtgtcatgtaatagattactatttcaaaacatagatatttagttatctaaataaaactaggccatccatggatggtttcaa
13038100
<---------------
AGL15
--------------->
AGL15
----------------->
AGL3
<-----------------
AGL3
----------------->
AGL2
---------->
DOF2
--------->
YAB1
<---------
ANAC58
<---------
YAB1
--------->
ATHB12
<---------
ZAT6
--------
AHL20(2)
----------->
GT1
--------->
ATHB12
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(l2)
-------
AHL20(1)
----------->
GT1
<---------
YAB1
--------->
GLK1(2)
<---------
ANAC58
-------
AHL20(2)
--------->
DAG2
--------->
YAB1
---------->
DOF2
<---------
ANAC46
<--
------>
AHL20(2)
---------->
DOF2
<-----------
GT1
<-----------------
AGL2
<---------
ANAC46
<--
ttttttttttcatatgaaagaaaagttaaatttcatttcacaataaccattgattactaaatttagtaaagaatcaattgggtttagtgtttacttgttt
13038200
<xxxxxxxx
--------->
GLK1(2)
--------->
HSFB2a(2)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<------
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(l2)
<---------
HSFB2a(2)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
<---------
ANAC46
<xxxxxxxxxxx
<---------
TOE1(3)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
<---------
GLK1(2)
<----------
DOF2
--------->
YAB1
--------->
CCA1(2)
<----------
DOF2
<---------
CCA1(2)
<-----------
GT1
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(i2)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
<
-------
TOE2(3)
<---------
TOE2(3)
---------->
DOF2
<---------
ATERF1(1)
<---------
ETT(2)
<xxxxxxxx
-------
TOE1(3)
<---------
YAB1
<---------
YAB1
<------
NtERF2
<xxxxxxxxxxxxxxxx
smallRNA(i)
<
aaggttttttttttttcttttgttatggttctatactaatatcaaagagttatgggccgaagcccatacatctttccgtcgagaatctcatatattcttt
13038300
*
TSS
--------->
STY1(1)
<---------
GLK1(2)
------>
NtERF2
<---------
ANAC58
<---------
HSFB2a(2)
--------->
At4g35610
--------->
HSFB2a(2)
--------->
RAP2.3(2)
<---------
ETT(2)
<------
NtERF2
<---------
ANAC58
<---------
ANAC46
--------->
ATERF1(1)
<----------
DOF2
--------->
RAP2.3(1)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
--------->
DEAR4(2)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
--------->
ORA47(2)
--------->
ANAC46
xxxxxxxxxxxxxxx
smallRNA(le3)
<---------
DAG2
<---------
RAP2.3(1)
<----------
DOF2
----
DOF2
<xxxxxxxxxxxxxxxx
smallRNA(i)
<---------
ATERF1(1)
<---------
DAG2
xxxxxxxxxxxx
smallRNA(si3)
--------->
GLK1(2)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(s2)
xxxxxxxxxxxxxxxx>
smallRNA(i)
xxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
--------->
TOE1(3)
--------->
TOE1(2)
<-----------
GT1
xxxxxxxxxxxxxxx
smallRNA(si3)
--------->
TOE2(3)
--------->
YAB1
<----------
DOF2
<xxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
<-----------
GT1
<-------
TEIL
--------->
DEAR3(1)
---------->
ID1
atcgaagcccatacatctttccgtcgagaatctcatatataccttatcccattcaacattcatacgag
cgccgctctagggtttttgcttttcgccattg
13038400
--------->
ANAC58
--------->
ANAC46
--------->
ANAC58
<---------
ZAT18
<xxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(i2)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(l2)
<----------
DOF2
<---------
ANAC46
<---------
TOE1(3)
--------->
TOE2(3)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
<---------
AHL20(2)
<---------
MYB46(3)
<---------
At4g35610
<---------
YAB1
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(i2)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
<---------
AHL20(2)
xxxxxxxxxxxxxxxx>
smallRNA(fl3)
<---------
ANAC58
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(i2)
xxxxxxxxxxxxxxxxxxx
<---------
ANAC58
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(l2)
xxxxxxxxxxxxxxxxxxx
<-------
GAMYB
<---------
ANAC58
<---------
YAB1
<xxxxxxxxxxxxxxxxxxxx
<------
MYB46(1)
<xxxxxxxxxxxxxxxxxxxxx
smallRNA(i2)
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
<------
MYB83
<---------
ANAC58
<---------
AHL20(2)
xxxxxxxxxxxxxxxx>
smallRNA(i)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
<---------
AHL20(1)
<---------
YAB1
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
--------->
YAB1
<---------
TOE1(2)
<---------
ARR14(2)
<----------
DOF2
<--------
P
--------->
ZAT18
<---------
AHL20(1)
<-----------
GT1
--------->
ARR14(2)
xxxxx
smallRNA(i)
<---------
TOE2(3)
<----------
DOF2
<-----------
GT1
<-----------
GT1
--
gtccaagtgctatttggttgtttaag
gttgcttttagcacacaactttaatattatttttatgtttttcttcttacgatttatcgatttgtgggatactg
13038500
------>
NtERF2
--------->
DEAR3(1)
--------->
RAP2.3(2)
<------
NtERF2
--------->
DEAR4(2)
--------->
ATERF1(1)
--------->
ORA47(2)
--------->
RAP2.3(1)
------>
NtERF2
<---------
RRTF1(1)
------>
ZmHOX2a(2)
<------
ZmHOX2a(2)
--------->
ARR14(2)
<---------
ARR14(3)
<---------
ARR11(3)
<----
<---------
YAB1
<---------
ARR14(2)
<---------
TOE2(3)
<---------
YAB1
--------->
ARR11(3)
<---------
DAG2
<----
<---------
GLK1(2)
<---------
AGP1
<---------
ALFIN1
<-----
--------->
YAB1
<-----------
ARR10
<---------
ABI4(2)
<-----
xxx>
smallRNA(i2)
--------->
ARR14(3)
--------->
TOE1(2)
<---------
TOE1(3)
xxxx>
smallRNA(i2)
--------->
AGP1
<----------
DOF2
--------->
YAB1
<----------
DOF2
xxx
smallRNA(fl3)
--------->
ANAC46
<---------
RAP2.3(1)
<-------
TEIL
--------->
DEAR3(1)
------->
WOX13(1)
<-----------
GT1
<---------
CCA1(2)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(s2)
<-------
acaatcagattattgttgttttttccag
ccaaatatcagatcttgcgccgctctttatcccattcaacattcatacgagcaccgctttacggtttttgct
13038600
--------->
ANAC58
--------->
ANAC46
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(i2)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(i2)
<xxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
<----------
DOF2
<---------
ANAC58
<---------
TOE1(3)
<---------
TOE2(3)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
<---------
MYB46(3)
<---------
At4g35610
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(i2)
xxxxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
<---------
AHL20(2)
<---------
ANAC58
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(l2)
<-------
GAMYB
<---------
ANAC46
<---------
AHL20(2)
<---------
ANAC58
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(l2)
<------
MYB46(1)
<xxxxxxxxxxxxxxxxxxxxx
smallRNA(i2)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(fl3)
<---------
YAB1
xxxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
--------->
TOE2(3)
<xxxxxx
<<<<<<<<<<<<<<<<<
LFY
<------
MYB83
<---------
ANAC58
<---------
AHL20(1)
<-----------
GT1
-----
DAG2
xxxxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
--------->
ANAC58
<---------
YAB1
xxxxxxxxxxxxxxxx
------
DOF2
xxxxxxxxxxxxxxxxxxxxxxx>
smallRNA(se3)
--------->
YAB1
<xxxxxxxxxxxxxxxxx
----
ANAC58
<----------
DOF2
<--------
P
--------->
ZAT18
<---------
AHL20(1)
<---------
YAB1
----
ANAC58
<xxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
<----------
DOF2
<---------
TOE1(2)
----
GT1
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
<---------
ZAT18
<---------
AHL20(2)
<-----------
GT1
<
tttcgacattggtcgaagtgctatttggttgtttaag
gttgcttttagcacacaactttaatattatttttatgttttcttcttacgatttatcgatttg
13038700
<---------
GLK1(2)
--------->
YAB1
--------->
WOX13(1)
<---------
ARR14(2)
--------->
ARR14(2)
--------->
ARR14(2)
<-----------
GT1
--------->
LBD16
--------->
ARR11(3)
<---------
AHL20(2)
--------->
HSFB2a(2)
xxxxxxxxxxxxxxxx
smallRNA(i2)
<---------
RVE1(1)
--------->
ARR11(3)
>
smallRNA(i)
--------->
ARR11(3)
<---------
GLK1(2)
--------->
ATHB12
--
xxxxxx
smallRNA(si3)
---------->
ID1
--------->
ARR11(3)
--------->
ICU4
<---------
ARR14(2)
------
ZmHOX2a(1)
<-----------
RAV1(1)
---------->
DOF2
xxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
taggatactgacaatcagatttttgttgtttttttcagccaaaaatcagatttttttacattttgtttagagaatgattttggttcccgatttgtctgtt
13038800
<-------
GAMYB
<---------
MYB46(3)
<---------
ZAT6
--------->
MYB52(2)
<---------------
AtSPL8
--------->
ZAT6
<---------
ANAC58
---------->
DOF2
<---------
AHL20(1)
<---------
ARR14(2)
<---------
ANAC58
<---------
ANAC46
--------->
ARR11(3)
--------->
GLK1(1)
<---------
ARR11(3)
<----------
DOF2
--------->
AHL20(1)
<---------
GLK1(1)
--------->
ARR11(3)
-------->
ID1
<----------
DOF2
<-----------
GT1
--------->
ARR14(2)
<----------
DOF2
tttcgcttatgtgtaaagtactttgaaaaatattgtgttaactctacaatgggtatcccaaatttttgagttcttttgtcttgttcgttgtcgagacact
13038900
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AGI:
At4g25530.1
Description:
FWA; DNA binding / transcription factor. Identical to Homeobox protein FWA (FWA) [Arabidopsis Thaliana] (GB:Q9FVI6;GB:O65608;GB:Q9M0K7); similar to HDG7 (HOMEODOMAIN GLABROUS7), DNA binding / sequence-specific DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G52170.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN61351.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Lipid-binding START (InterPro:IPR002913); contains InterPro domain Homeodomain-like (InterPro:IPR009057); contains InterPro domain Homeobox; (InterPro:IPR001356)
Range:
from: 13038369
to: 13042452
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.