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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
--------->
ARR14(2)
<---------
TCP20
--------->
PCF2
<---------
ARR14(2)
--------->
LBD16
<---------
ANAC46
<---------
LBD16
--------->
TOE2(3)
--------->
LBD16
--------->
ANAC58
--------->
TOE1(3)
--------->
TOE1(3)
<-----------
HVH21
----------->
GT1
--------->
TOE2(3)
--------->
ANAC55(2)
---------
TOE2(3)
----------->
HVH21
<---------
ANAC55(2)
------->
MYB52(1)
<---------
AHL20(2)
------->
GAMYB
<---------
ANAC46
-----
ANAC55(2)
<---------
AHL20(2)
--------->
MYB46(3)
<---------
ANAC58
---->
ANAC55(2)
--------->
AHL20(2)
<---------
At5g28300
<---------
ANAC55(1)
---
AHL20(2)
<------
ZmHOX2a(1)
<---------
ANAC55(2)
<---------
ANAC58
-->
AHL20(2)
<---------
TOE2(3)
--------->
ANAC55(2)
--------->
ANAC46
--------->
ANAC58
gtaacgttaatatgcaagacttaggaatcaaatttaatctgatatgtgac
cttaaccgcgggttccacgaggtttacgtgtgagagaggcaagttcaacc
13005500
------>
ZmHOX2a(2)
<<<<<<<
GRF7
--------->
ANAC58
--------->
ARR11(3)
----------->
HVH21
------->
GAMYB
------->
MYC3
<---------
At5g28300
--------->
MYB52(1)
<-------
MYC3
--
<-----------
GT1
<-----------
GT1
--------->
ANAC58
------->
TEIL
----
<-----------
GT1
----------->
GT1
-------->
P
--------->
ANAC46
<---------
ANAC58
--
<---------
DAG2
<---------
TOE2(3)
--------->
MYB46(3)
<---------
ANAC58
---
<----------
DOF2
---------->
DOF2
<-----------
GT1
<-------
TEIL
-----
agactccctttttacc
ctgacaacaaaaaacaaacaaaaaggttttacagaatcaaccgctcgctcactcaagaagacagagatgcatgtgatctcgcac
13005600
---------->
DOF2
--------->
TOE2(3)
<-----------
HVH21
--------->
ICU4
---->
MYB83
--------->
GLK1(2)
----->
AtMYB61
------->
GAMYB
<-------
---->
MYB46(1)
--------->
ANAC58
<---------
At4g35610
-------->
RAV1(1)
<---------
ALFIN1
--------->
At4g35610
--------->
At4g35610
----
---->
MYB46(3)
--------->
ANAC46
------->
TEIL
--------->
ANAC58
<------
ZmHOX2a(1)
<--------
caacacaaac
ctgtaagcgccactgctcgaatgaatctctaagcgctgcaacgaaattcttagtatccataggagttttcatctccacgatgactccacc
13005700
--------->
ANAC46
--------->
ANAC58
--------->
MYB52(1)
--------->
MYB46(3)
<---------
YAB1
--------->
YAB1
--------->
ANAC46
<---------
ICU4
--------->
ARR14(3)
<---------
ATHB12
<---------
ARR14(3)
--------->
ICU4
--------->
ANAC58
--------->
GLK1(2)
--------->
ARR14(2)
--
ALFIN1
<---------
MYB52(2)
--------->
ARR11(3)
<---------
ARR14(2)
----->
At5g28300
<---------
ARR14(2)
<------
ZmHOX2a(1)
-
ZAT14
----------------->
AGL2
<---------
ARR11(3)
<---------
ANAC46
----------->
HVH21
gtaatcatcatccacaaacggaagtacttcgaaaatcttgtgttctactccattacgcagaggagcctcttggtctgacat
gcttcaaactctgaaaaaa
13005800
--------->
ANAC58
--------->
ARR11(3)
----------->
GT1
--------->
ANAC58
<---------
ARR11(3)
--------->
DAG2
*
TSS
<---------
HSFB2a(1)
--------->
ARR11(3)
----------->
GT1
<---------
ICU4
<---
--------->
HSFB2a(1)
--------->
DAG2
<---------
AtMYB61
--------->
ATHB12
--
--------->
ATHB12
---------->
DOF2
---------->
DOF2
--------->
ANAC46
---------->
DOF2
<------
ZmHOX2a(1)
------->
GAMYB
---------->
DOF2
--------->
ALFIN1
<---------
ATHB12
----
tttggaggaagattggaagatttcaagtattcaacgaaaaggagaagataaagtaaaaggagagtgtggtttc
aacgaagcaaatgatttcaaaaggaga
13005900
<------
NtERF2
------------>
CBF
------>
NtERF2
--------->
RAP2.6(2)
<---------
RAP2.6(2)
<---------
ICU4
--------->
ATERF1(2)
<---------
PCF2
<---------
ATERF1(2)
------->
TEIL
<-----------
HVH21
<---------
DEAR3(1)
<---------
ICU4
<------
MYB46(1)
--------->
RAP2.6(3)
--------->
ICU4
<------
MYB83
<---------
ATERF1(1)
<---------
ATHB12
--------->
MYB55(2)
<---------
O2
<---------
RVE1(1)
<---------
MYB46(3)
---
--------->
O2
<---------
CCA1(1)
<--------
P
--------->
YAB1
--------->
YAB1
<---------
AHL20(2)
--------->
YAB1
<---------
ANAC58
<---
<---------
ATHB12
----------->
TBP
<-----------
GT1
<---------
ANAC58
------
------
KAN4(2)
----------->
GT1
--------->
ARR11(3)
<---------
ANAC46
------
------->
WOX13(1)
<---------
At4g35610
<---------
ARR11(3)
--------->
TOE2(3)
<---------
ATHB12
-------->
CBF
--------->
At4g35610
<<<<<<<<<
RAP2.2
<-------
TEIL
--------->
ALFIN1
-------
acaatcacgaggcggcaatggcagaagtcaagtagttatataaacatttagatatttactaataatgtacattagtggggtgggtcacaaatcataacca
13006000
----------->
HVH21
<-----------
TGA1
--------->
ANAC55(1)
--------->
ANAC58
--------->
bZIP60(2)
<---------
TGA1a
--------->
O2
--------->
ANAC46
<---------
ANAC46
<---------
ANAC58
--------->
bZIP60(1)
<---------
bZIP60(1)
<---------
bZIP60(2)
--------->
ANAC55(2)
--------->
ANAC58
<---------
ANAC55(2)
<---------
DOF5.7(2)
<---------
ANAC58
--------->
DOF5.7(2)
----------->
STF1
<----------
DOF2
<-----------------------
TaNAC69(2)
----------------------->
TaNAC69(2)
----------->
HVH21
--------->
TGA2(2)
<---------
ANAC58
<---------
O2
--------->
ANAC46
<---------
ANAC46
--------->
ANAC58
--------->
ZAT14
--------->
TGA1a
--------->
YAB1
<---------
ZAT14
==================
bZIP_DOF
----
<-------
TEIL
--------->
ALFIN1
<---------
ANAC55(2)
----
--------->
AHL20(2)
<---------
ANAC46
--------->
ANAC55(2)
----
------>
YAB1
<---------
DEAR3(1)
<---------
ALFIN1
----
------
YAB1
<-----------
HVH21
<---------
ANAC58
<-----------
STF1
<---------
GLK1(1)
->
GAMYB
--------->
ICU4
=================================================
MYC_MYB
--------->
GLK1(1)
--->
YAB1
<---------
ICU4
-------->
P
------>
NtERF2
----------->
TGA1
<-----------
HVH21
--------->
YAB1
<---
-->
MYB46(3)
<-----------
GT1
<---------
MYB52(1)
<---------
ALFIN1
--------->
ANAC58
----
tcataaattcataatggccttcacattaacccgtcgaggcccttcggtggagtgacgtagtcccacacgtcacctttaacgcaaaaataagaaatccata
13006100
<---------------
AGL15
--------->
TOE2(3)
--------------->
AGL15
--------->
TOE1(3)
----------------->
AGL2
--------->
ZAT6
----->
ANAC58
----->
ANAC46
----->
ANAC55(2)
<-----------
HVH21
--------->
ATHB12
----->
ANAC55(1)
<-----------
RAV1(1)
<-------
TEIL
------
ANAC55(2)
<----------
DOF2
<-------
TEIL
----->
ANAC58
--------->
YAB1
<---------
ICU4
<-----------
GT1
<---------
MYB52(1)
cgtaacacaaaccctaattagaaatacttttgatcatgtcgcatgctctaatttccattttgacaaaataactccgtttagtttcatattcattagagaa
13006200
<
<
<
<x
<xx
<xx
<xx
<xx
<xx
<xx
----
----
<xxx
----
<xxx
<xxx
<xxx
<xxx
-----
<xxxx
<xxxx
<xxxxxxxxxxxxxxxxxx
smallRNA(fl3)
<xxxx
<xxxxxxxxxxxxxxxx
smallRNA(s)
<-----
<---------
PCF2
------
<xxxxxxxxxxxxxxxx
smallRNA(i)
<xxxxx
<xxxxxxxxxxxxxxxx
smallRNA(s)
<xxxxx
<xxxxxxxxxxxxxxxx
smallRNA(s)
<xxxxx
<---------
MYB52(1)
<xxxxxx
--------->
ALFIN1
<xxxxxxxx
--------->
DEAR3(1)
--------->
MYB46(3)
<xxxxxxxx
--------->
AHL20(1)
<xxxxxxxxxxxxxxxxxxx
smallRNA(s2)
<xxxxxxxx
--------->
YAB1
--------->
MYB46(3)
--------->
ANAC58
<xxxxxxxx
--------------->
AtSPL8
--------->
ANAC58
--------->
ANAC58
<xxxxxxxx
<---------------
AtSPL8
--------->
ANAC46
--------->
TOE1(2)
<----------
DOF2
--------->
bZIP60(1)
--------->
ANAC58
--------->
PCF2
----------->
GT1
--------->
ZAT18
<---------
TGA2(1)
--------->
AHL20(2)
<xxxxxxxxxxxxxxxxxxxxxxx
smallRNA(si3)
<---------
ZAT18
--------->
TGA2(1)
<---------
AHL20(2)
<---------
ALFIN1
--------->
DEAR3(2)
<---------
ANAC58
<x
<---------
bZIP60(1)
----------->
GT1
<xxxxxxxxxxxxxxxxxxxx
smallRNA(l2)
<---------
ANAC58
<x
tgggcttactgacatcatggtacaaaaataaaatgtaatttca
cgcccaccgtggggctcgaacccacgaccagaaggttaagagccttgcgctctacca
13006300
<xxxxxxxxxxxxxxx
smallRNA(le3)
<xxxxxxxxxxxxxxx
smallRNA(fl3)
xxxxxxxxxxxxxxxx
smallRNA(s)
xxxxxxxxxxxxxxxx
smallRNA(i)
xxxxxxxxxxxxxxxx
smallRNA(se3)
xxxxxxxxxxxxxxxx
smallRNA(se3)
xxxxxxxxxxxxxx
smallRNA(i)
xxxxxxxxxxxxxx
smallRNA(s)
xxxxxxxxxxxxxxxx
smallRNA(fl3)
xxxxxxxxxxxxxxxx
smallRNA(se3)
xxxxxxxxxxxxxxxx
smallRNA(si3)
xxxxxxxxxxxxxxx
smallRNA(se3)
------->
RAV1(2)
-->
MYB83
<---------
ANAC58
xxxxxxxxxxxxx
smallRNA(s)
-->
MYB46(1)
<---------
ANAC58
xxxxxxxxxxxxxxxx
smallRNA(se3)
xxxxxxxxxxxxxxxx
smallRNA(le3)
xxxxxxxxxxxxxxxx
smallRNA(fl3)
xxxxxxxxxxxxxxxx
smallRNA(si3)
---->
MYB52(1)
----------->
GT1
xxxxxxxxxxxxxxxx
smallRNA(se3)
xxxxxxxxxxxxxxxx
smallRNA(si3)
xxxxxxxxxxxxxxxx
smallRNA(fl3)
----
MYB111(1)
*
TSS
--->
MYB46(3)
<----------
DOF2
--------->
HSFB2a(2)
xxxxxxxxxxxxxxxx
smallRNA(se3)
xxxxxxxxxxxxxxxx
smallRNA(si3)
xxxxxxxxxxxxxxxx
smallRNA(fl3)
xxxxxxxxxxxxxxxx
smallRNA(l2)
--------->
AHL20(2)
xxxxxxxxxxxxxxxx
smallRNA(s2)
<---------
AHL20(2)
xxxxxxxxxxxxxxxx
smallRNA(fl3)
----------->
TBP
xxxxxxxxxxxxxxxx
smallRNA(le3)
<---------
At4g35610
xxxxxxxxxxxxxxxx
smallRNA(se3)
--------->
ZAT2
----------->
GT1
<---------
ZAT6
xxxxxxxxxxxxxxxx
smallRNA(si3)
--------->
At4g35610
----------->
GT1
--
xxxxxxxxxxxxxxxx
smallRNA(fl3)
<---------
ZAT2
<---------
AHL20(2)
--------->
O2
--------->
DAG2
----
xxxxxxxxxxxxxxx
smallRNA(s)
<---------
HSFB2a(2)
<---------
TOE2(3)
---------->
DOF2
-----
actgagctagacgggc
ttgttgttaattttccagcagaactatataaataatgtaaactatccccatgtctcatcttgagtaaaagtgttaaacattcaa
13006400
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AGI:
At4g25434.1
Description:
ATNUDT10 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 10); catalytic. Identical to Nudix hydrolase 10 (NUDT10) [Arabidopsis Thaliana] (GB:Q6NPD7;GB:O65616); similar to ATNUDT2 (Arabidopsis thaliana Nudix hydrolase homolog 2), ADP-ribose diphosphatase/ NAD binding / hydrolase [Arabidopsis thaliana] (TAIR:AT5G47650.1); similar to unknown [Populus trichocarpa x Populus deltoides] (GB:ABK96281.1); contains InterPro domain Anti-sense to fibroblast growth factor protein GFG (InterPro:IPR003293); contains InterPro domain NUDIX hydrolase, core; (InterPro:IPR000086); contains InterPro domain NUDIX; (InterPro:IPR015797)
Range:
from: 13004007
to: 13005873
Orientation: Reverse
Links:
TAIR
MIPS
AGI:
At4g25435.1
Description:
pre-tRNA. tRNA-Lys (anticodon: CTT)
Range:
from: 13006244
to: 13006316
Orientation: Reverse
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.