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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<---------
ANAC58
--------->
LBD16
------>
NtERF2
>>>
--------->
ANAC58
<--
--------->
ANAC58
<--
--------->
ANAC46
<---------
ANAC58
-
<---------
LBD16
<---------
ANAC58
<
<---------
ARR14(2)
--------->
ALFIN1
--
<---------
ANAC46
<---------
ANAC46
<----
<---------
HSFC1(2)
<---------
ANAC58
------
--------->
TOE2(3)
<---------
HSFB2a(1)
<---------
AHL20(2)
---------
--------->
TOE1(3)
*
TSS
--------->
HSFC1(2)
--------->
AHL20(2)
XXXXXXXXXXX
--------->
GLK1(1)
<---------
TOE2(3)
----------->
TGA1
--------->
ARR14(2)
--------->
ALFIN1
----
gcagagaaaccctaatttcaattgaggtcgaattgtt
gttgttgtgatgacgaagaagcgtcgtagttccgccattaaatggagtgtgtgtgagtgagtg
17300000
<-----------
GT1
>>>>>>>
E2Fa
-------
ANAC46
-------
PCF2
----------->
CBF
------
NtERF2
---->
NtERF2
<---------
ALFIN1
--
-----
ATERF1(1)
<--
--->
ALFIN1
--------->
MYB46(3)
------
>
ATHB12
--------->
ANAC46
------
XXXXXXXXX>
MIR171A
<----------
DOF2
<-----
----->
RAP2.3(1)
--------->
ANAC46
--------->
HSFB2a(2)
<-----------
GT1
------>
NtERF2
-------
gcgccaatatttccctccaccctaaaaaaaacttctaaaattctaagttgggctttttaactatttcatgtagttctcggcccattagacccaaaatttt
17300100
--------->
AHL20(2)
<---------
HSFB2a(2)
------->
YAB1
-------
YAB1
--->
AHL20(1)
--------->
ZAT14
--->
AHL20(2)
<---------
ZAT14
<---------
At4g35610
----
AHL20(2)
--------->
AHL20(2)
<----------
DOF2
<---------
ANAC58
<-
-->
AHL20(2)
<---------
AHL20(2)
<---------
YAB1
<---------
ANAC58
<----
attatagaagaataaatatggacatttaaattcttcactgatacaatttggcattttttgattctttgggatttgtattgtcttgttttctctgctaatt
17300200
--------->
GLK1(2)
<-------
TEIL
<---------
ARR14(2)
<---------
ARR11(3)
--------->
ARR14(2)
--------->
AHL20(1)
<---------
GLK1(2)
<---------
AHL20(1)
--------->
ANAC46
------------>
CBF
----
--------
YAB1
--------->
ARR11(3)
--------->
ANAC58
--------->
AHL20(2)
<---------
AHL20(2)
-----
AHL20(2)
--------->
AHL20(2)
--------->
ANAC58
<---------
AHL20(2)
--------->
AHL20(2)
tatgattctaaattctaaaaaatattcatccattctaaaactcgcaaattctgagcatatttaaatgggcttagccaattcatttaatcggcccattagc
17300300
------>
ZmHOX2a(2)
<------
<---------
ARR11(3)
-------
--------->
At4g35610
--------->
ARR11(3)
<------
------------>
CBF
<------------
CBF
<------
------>
ZmHOX2a(1)
--------->
ATHB12
<------
--------->
ARR11(3)
<---------
YAB1
<---------
YAB1
--------->
TOE2(3)
<---------
ARR11(3)
<----------
DOF2
<---------
AHL20(2)
--------->
TOE1(3)
-------->
CBF
--------->
TOE2(3)
<---------
GLK1(2)
*
TSS
------->
TEIL
------>
ZmHOX2a(1)
ccaattcaagttcttcctcaatagcagaagaaaatggaatctttattgatctt
agggtttatatgaatttatgattcttcctcttaaaccctaatttcgt
17300400
--------->
YAB1
<---------
ATHB12
--------->
AHL20(2)
------>
ZmHOX2a(1)
<---------
At4g35610
<---------
AHL20(2)
<-----------
GT1
--------->
ARR14(2)
<---------
ANAC58
---
ANAC58
<---------
ARR14(2)
<---------
ANAC58
-->
ANAC55(2)
--------->
ANAC58
----------->
GT1
<-
---
ANAC55(2)
--------->
ANAC46
<---------
ANAC55(2)
---
ANAC46
--------->
ANAC58
--------->
AtLEC2
--------->
ANAC55(2)
---
ANAC58
------>
ZmHOX2a(1)
------>
ZmHOX2a(1)
<---------
AtLEC2
<---------
ANAC46
attcttactccttcctcgccaatcttcatcttcctc
atgttttctctaattctccatggaagaaagtctgtggaattacagaaatggcgtaatttaagag
17300500
<---------------
AtSPL8
--------------->
AtSPL8
------>
MYB83
<-------
TEIL
<---------------
AtSPL3
------>
MYB46(1)
--------->
CCA1(2)
<---------
MYB111(1)
--------->
ARR14(1)
--------->
MYB46(3)
<---------
ARR14(2)
<-----------
GT1
<---------
GLK1(2)
<----------
DOF2
--------->
ARR14(2)
<---------
GLK1(1)
<---------
ATHB12
--------->
ARR11(1)
<----------
DOF2
<---------
ZAT18
------->
TEIL
--------->
AtMYB61
---------->
DOF2
--------------->
AtSPL3
--------
At5g28300
<-------
TEIL
<---------
At5g28300
--------->
HSFB2a(2)
---------->
DOF2
ttacagtgagcattgtgcaaaatgcatttccttttaccaccaaatcgttctcttctacaatagctaaagattcgagtccaaagggaagtactttcacagt
17300600
--------->
GLK1(2)
--------->
ARR14(2)
<---------
ANAC58
<---------
ARR14(2)
--------->
ATHB12
<---------
GLK1(2)
<---------
ICU4
---------->
DOF2
<---------
ARR14(2)
-------->
ATHB1
---------->
DOF2
--------->
GLK1(1)
---
<---------
ATHB12
--------->
TOE2(3)
>>>>>>>>>
GT-1
<--
------------>
ATHB5
--------->
HSFB2a(2)
--------->
At5g28300
---
<---------
CCA1(2)
<---------
ANAC58
<---------
HSFB2a(2)
----------->
GT1
<---
ctcttatctcgttgaatcattgggtttgactaaaaaacttgcagaaacaatctcaaagaaagtcaccttcgaagacaaggtaaatccagattctgttctg
17300700
--------->
ARR11(3)
--------->
YAB1
<------
ZmHOX2a(1)
<---------
ARR11(3)
--------->
ARR11(3)
<---------
RVE1(1)
--------->
GLK1(1)
<---------
GLK1(1)
--------->
TOE1(2)
--------->
ARR11(3)
-------->
P
<---------
ANAC46
--------->
GLK1(2)
<---------
SPL7
<---------
GLK1(2)
<---------
ARR11(3)
<---------
ANAC58
--------->
ARR11(3)
<---------
ANAC58
---->
TEIL
<---------
ARR11(3)
<---------
ICU4
<---------
ANAC58
--------->
GLK1(1)
-------
ARR14(2)
<---------
ARR14(2)
--------->
YAB1
--------->
ANAC46
<---------
GLK1(1)
------>
ARR14(2)
--------->
ARR14(2)
<------
ZmHOX2a(2)
--------->
ATHB12
--------->
At4g35610
------
CCA1(2)
----------->
GT1
<---------
ARR11(3)
<---------
ANAC58
<---------
GLK1(2)
---
aatcttcttagaagtaatgggtttaaagattctcagatatctaggatcataagggcttacccacgattgcttgtaacagatgctgagaaatctcttcgtc
17300800
--------->
GLK1(2)
--------->
MYB46(3)
--------->
KAN4(2)
<---------
KAN4(1)
<---------
HSFB2a(1)
-------
--------->
HSFB2a(1)
<------
<---------
HSFC1(2)
-------
<---------
bZIP60(1)
--------->
KAN4(1)
<-------
--------->
At4g35610
--------->
HSFC1(2)
----------->
GT1
<------
ZmHOX2a(1)
<-----------
HVH21
<---------
KAN4(2)
--------->
DAG2
------->
DOF2
---------->
DOF2
--------->
bZIP60(1)
<---------
TOE1(2)
---------->
DOF2
<-
caaagcttcagtttttaaagtctagaggagcttcaagctctgaggtcatagagattgtttcgaatgttccaacaatcttggataagaaaggtgaagaatc
17300900
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AGI:
At3g46940.1
Description:
deoxyuridine 5'-triphosphate nucleotidohydrolase family. similar to unnamed protein product [Vitis vinifera] (GB:CAO61170.1); contains InterPro domain DeoxyUTP pyrophosphatase subfamily 1; (InterPro:IPR008181); contains InterPro domain DeoxyUTP pyrophosphatase; (InterPro:IPR008180); contains InterPro domain dCTP Deaminase; (InterPro:IPR003232)
Range:
from: 17299179
to: 17299937
Orientation: Reverse
Links:
TAIR
MIPS
AGI:
At3g46950.1
Description:
mitochondrial transcription termination factor-related / mTERF-related. similar to mitochondrial transcription termination factor-related / mTERF-related [Arabidopsis thaliana] (TAIR:AT1G61960.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40592.1); contains InterPro domain Mitochodrial transcription termination factor-related (InterPro:IPR003690)
Range:
from: 17300354
to: 17301948
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.