Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                                         <-----------ARR10                                                                                       --------->ARR14(2)                                                                                       --------->GLK1(2)                                                                                       <---------ARR14(2)                                                                         --------->ARR11(3)                                                                         --------->ARR14(2)                                                                <---------ZAT14        <---------ARR11(1)                                                            <-----------HVH21          ------->TEIL                              --------->MYB46(3)         --------->ANAC55(2)          <---------CCA1(2)                     >>>>>>>>>RAP2.2                     <---------ANAC55(1)  --------->YAB1              --------->AHL20(2)                         <---------ANAC58<---------GLK1(2)            <---------HSFB2a(2)                          <---------ANAC55(2)  <---------ICU4 ----------DOF2    <---------ARR11(3)            <------ZmHOX2a(2)     ----------->ARR10--------->HSFB2a(1) ---->ZmHOX2a(2)   --------->ARR11(3)           <---------ARR11(3)--------->ZAT14     <---------ARR14(1) ----->ARR11(3)   --------->CCA1(1)             --------->ARR11(3)<---------ZAT14     <---------GLK1(2) ------ARR11(3)   --------->RVE1(1)    ------->GAMYB     <---------ANAC46<---------ARR11(3)        <- ---WOX13(1)--------->HSFB2a(2)     --------->MYB52(1)   <---------ANAC58<---------ARR14(2)      ----   atctttatatgcttctataaatatctaaaacaacaatccaacggtggaaagatcacattgcgtgtcagtactgtagatactcatcaccgaatctttctcc  17193700                         -------->P                         ------>MYB83                         ------>MYB46(1)                         --------->MYB52(1)                        --------->MYB55(1)                        <---------ALFIN1                       <---------MYB55(2)                       --------->MYB46(3)                       <---------ABI4(2)                      --------->DEAR3(2)                     --------->PCF2            --------->ZAT2            <---------At4g35610                             --------->YAB1            <-----------GT1            --------->At4g35610                             --------->ANAC46   ----------->GT1            ----------->RAV1(2)         <---------DAG2 <------NtERF2         <---------MYB52(1)            <---------ZAT2    <---------ARR14(2)      --------->ANAC46       ========================          <-----------RAV1(2) --------->ARR14(2)      --------->ANAC58       <-------GAMYB   <-----------GT1   ------->TEIL       <----------DOF2--------->LBD16      <---------DEAR3(2) ---------DOF2     <------NtERF2     <---------ALFIN1 --------->ANAC58      <------MYB83 -->ZmHOX2a(1)     <---------SPL7   <---------ZAT18  <---------LBD16        <------MYB46(1)   tcttttcactctccagctggccgaacccaccggttttgcccactttctctctaggcccgcaaacacaacttgctaagtcggtagtaatttactgaaaaac  17193800                                  --------->ALFIN1                                 <-------MYC3                                 ------->MYC3                                 ------->PIF5                                 ------->MYC4                                 <-------MYC4                                 <-------PIF5              <------MYB83                                 <-------MYC2              <------MYB46(1)                                 ------->MYC2              ----------->GT1                                --------->ANAC46          --------->MYB46(2)                                --------->PIF3(3)   --------------->AGL15                                <---------PIF3(3)  <-----------------AG                                <---------TGA1a    ----------------->AGL1                                <---------O2       ----------------->AG                     <----------DOF2               <-----------------AGL1                     =====================bZIP_DOF------->TEIL                     ====================================bZIP_DOF                 ---------->ID1 >>>>>>>>>>HY5  <---------bZIP60(2)             <---------bZIP60(2)--------->O2   <---------ANAC58             <---------O2<-----------GT1       <---------ANAC55(1)             <---------TGA1a<-----------------PIF3(1)     --------->MYB59                           <             <---------ANAC58   --------->TGA1a--------->TGA1a                             <---------YAB1             ===================bZIP_DOF       <---------ANAC46                            --------->ICU4             <---------ANAC58   =========================bZIP_bZIP                    ----------->GT1          ----------->HVH21--------->ANAC58    --------->ANAC55(2)                    ------>ZmHOX2a(2)        --------->At4g35610--------->ANAC58    <---------ANAC58                     <---------ARR11(3)        <---------At4g35610--------->ANAC46    <---------TGA1a              <---------ATHB12        - ======================MYC_MYB<---------ALFIN1 <---------ANAC55(2)        --------->WOX13(1)       <-   cctcacaaatagctgacttggctcttttcactccacgtggctccatcttacgtgcctagtttggtaatttcaatttcaatcacctagatcgtaactattg  17193900                  <---------ANAC55(1)                  <---------ANAC55(2)                  --------->ANAC55(2)                  <---------ANAC58                  <---------ANAC58                  <---------bZIP60(2)                  <---------TGA1a           <---------DEAR3(2)                  <---------ANAC46          <------MYB46(1)                  <---------O2              <------MYB83            ------>ZmHOX2a(2)                  ===================bZIP_DOF                      <------ZmHOX2a(2)                  >>>>>>>>>>HY5             <---------MYB46(3)     --------->CCA1(2)                  --------->O2             <---------DEAR3(1)     <---------ARR14(2)                 ----------->STF1       <------MYB46(1)           --------->ARR14(2)          <------                <---------TGA2(2)       <------MYB83    <---------RVE1(1)                     -------               ----------->HVH21       --------->MYB59 --------->AHL20(1)        <---------MYB59               ----------->TGA1        <---------AtMYB61<---------CCA1(1)  <---------ARR11(3)--------          <---------At4g35610          --------->MYB46(2)         --------->ARR11(3)>>>>>>>>>AtLHY        <---------ZAT14                --------->MYB111(1)        <---------ARR11(3)>>>>>>>>>AtCCA1        --------->ZAT14            <------MYB83        <---------ARR11(3)  --------->ARR11(3)<-------        --------->ZAT18            <------MYB46(1) ---------->DOF2--------->AGP1--------->STY1(2) ---------ANAC55(2)                <---------MYB46(3)  <---------AHL20(1) --------->RVE1(1)  -------- -------->ANAC55(2) --------->ALFIN1 <---------MYB52(1)--------->ARR11(3) --------->CCA1(1)<---------ALFIN1 ------TEIL --------->ICU4---------->DOF2 <---------ORA47(1)      <---------AGP1<---------At4g35610   atacataatgtgaactgatgacgtgttgaaaagagattggttaggtcggtttgaaaagatatttagaagatctaaaatatctagctaactcgtccacgtt  17194000                      --------->HSFB2a(2)                      --------->LBD16               <----------DOF2               <---------DAG2        <------------CBF   <---------AHL20(2) ------>ZmHOX2a(1)   --------->AHL20(2) <---------HSFB2a(2)  --------->AHL20(2) --------------->AGL15  --------->YAB1     <---------LBD16                                                               -- -MYC3<---------AHL20(2)                                                                           <- >MYC3<---------AHL20(1)                                                                           -- ->O2 --------->AHL20(1)       >>>>>>>>>>GT-3b     <-----------ARR10             --------->HSFB2a(2) --O2 --------->ARR11(3)    ----------->GT1        --------->GLK1(2)<------------CBF              --- ->ANAC46  <---------ZAT18---------->DOF2   ----------->GT1<----------DOF2 *TSS  <---------HSFB2a(2)   ggaattaaaatattgcgctttttcctggaaaagaaaaatataaaacaagtgataatcttctctttttcgaaattgtttcacttctgaaaaaaaaaaaaaa  17194100        <---------At4g35610     <---------ANAC58     <---------ANAC58                                           <---------YAB1 ------->AHL20(2)            ------>MYB83             <---------ARR14(2) --------AHL20(2)            ------>MYB46(1)          --------->ARR14(2)     <---------At4g35610 ------->AHL20(1)          <---------MYB59       ------>ZmHOX2a(2)           --------->At4g35610 ------>AHL20(2) <---------ICU4                 <------ZmHOX2a(2) <-----------GT1      --------->At4g35610   aaaaattgtttgctcatcatcttcacaaaccaaacttctcttcttctccgatctcagatttgaatttttatcgattttgagcttcgaagagctcaatctc  17194200                                                                               --------->CCA1(2)                                                                              <---------ARR14(2)                                                                              --------->ARR14(2)                                                                         <---------ANAC46                                                                        --------->ATERF1(1)                                                                        <------NtERF2                                                                       ------>NtERF2                                                                       <---------ATERF1(1)                                                                      ----------->HVH21                                                                      --------->DEAR3(1)                                                                      <---------DEAR3(1)                                                                     --------->ATERF1(1)                                                                    --------->LBD16                                                                    ------>NtERF2         <---------HSFC1(1)                                        <---------LBD16         --------->HSFC1(1)                                       <---------LBD16         --------->HSFB2a(2)           <---------------AtSPL8 <---------HSFC1(2)        <---------YAB1         <---------HSFB2a(2)          <------ZmHOX2a(1)       --------->HSFC1(2)    <---------GLK1(1)   taactgaatttcgagaaattagagagtttgaaatgggagaggaagtacaaatgagcgattacgatgtttccggcgacggagatagggtttctgaatggga  17194300                     <------ZmHOX2a(2)                     --------->CCA1(2)                    <---------ARR11(3)                    --------->AGP1                    <---------ARR14(2)                    --------->ARR14(2)                    --------->ARR14(3)                                                          <----                    <---------ARR14(3)                                                          -----                    <---------AGP1                                                             <-----                    --------->ARR11(3)                              <---------ANAC58         --------            ----------->HVH21                                       <---------ANAC58         --------           --------->DEAR3(2)                                    <---------DEAR3(1)          <-------          ------>MYB46(1)                                       --------->ATERF1(1)        --------->GLK1(2)          ------>MYB83------>ZmHOX2a(2)                 --------->ARR14(2)                 ----------          --------->ANAC58           <-----------GT1    <---------ARR14(2)        <---------LBD16----          --------->ANAC58      <----------DOF2     --------->ANAC46<---------ANAC46--------->LBD16          --------->ANAC46  <---------CCA1(2)       <-----------------AGL1       --------->MYB52(1)   gatgggattaccaagcgacgaagatctagcatctctttcttactctctgattccaccgaatttggcgatggcgtttagtatcacaccggagagaagccgt  17194400                                                       ------>ZmHOX2a(2)                                                     <---------AGP1                                                     --------->ARR11(3)                                             --------->ANAC55(2)        ----------->GT1                      <---------O2      <------ZmHOX2a(1)                      --------->O2    <---------TOE2(3)                        <---------ANAC58                                   =====   <-----------RAV1(2)                       <---------ANAC58                            <---------bZIP60(2) -----SPL1(1)                          ---------->ID1<---------ARR14(2)                  <---------ANAC58 ---->SPL1(1)                        <---------TGA1a --------->ARR14(2)                  <---------ANAC58 ----SPL7                            --------->O2    <---------ARR11(3)                  <---------ANAC46 ------->AtSPL8            --------->ATERF1(1) --------->ALFIN1                     <---------ICU4 == ------->AtSPL3           <---------ATERF1(1)<---------ANAC46                       --------->YAB1 <- --------AtSPL3      <---------At4g35610 <---------DEAR3(2)                   <------NtERF2     ===== -------->SPL14<---------ANAC58      <---------O2  <---------MYB46(3)       <---------DEAR3(1)  <---- ----->SPL7    <---------ANAC58      --------->TGA1a<---------CCA1(2)     <-----------HVH21--------->ALFIN1   acgattcaggatgtgaatcgtgcatcggagacgacgctctcgtcgctacgtggtggatcttcaggtccaaatacctcgtcgtcgaataataacgtggagg  17194500                                                                                         ============                                                                                         <---------LBD16                                                                                        =============                                                                                        <------ZmHOX2a(2)                                                                                     ----------->ARR10                                                                                    --------->ALFIN1                                                                                  <---------ANAC46                                                                                  --------->ALFIN1                                                                                 <------NtERF2               ------>ZmHOX2a(2)                                               <---------ANAC46               =================HOX2a_HOX2a                                    <---------DREB2C(2)             <---------ARR14(2)                                                <---------DEAR3(1)             <---------AGP1   ------>ZmHOX2a(2)                               <------NtERF2             --------->ARR11(3)                                               --------->ATERF1(1)    ============================HOX2a_HOX2a                                   <---------ABI4(1)    <-    <------ZmHOX2a(2)       <---------ARR14(2)                              <---------DEAR3(1)  <----   <---------ARR14(2)       --------->ARR14(2)                           <---------DREB2C(2) --------   --------->ARR14(2)    <---------HSFB2a(2)                             <---------DEAR3(1)  <-------   <---------ARR11(3)    --------->HSFB2a(2)  ---------->DOF2          --------->MYB52(1)------>ZmHOX2a(2)   --------->ARR11(3)    ------>ZmHOX2a(1)--------->ANAC58            ----------->HVH21<---------ARR14(2) =====================HOX2a_HOX2a<---------GLK1(2)                    ----------->TGA1 --------->TCP16(1) =====================HOX2a_HOX2a--------->ARR14(2)                 <---------At4g35610--------->TCP20 -----ZmHOX2a(1)     <---------RAP2.6(3)  --------->ANAC58          --------->At4g35610--------->ARR14(2) ==========HOX2a_HOX2a  <---------LBD16 ---------->DOF2      --------->ALFIN1------>NtERF2 --------->LBD16 --ZmHOX2a(1)--------->ARR14(2)  <---------ARR14(2)     --------->MYB52(1)  --------->ALFIN1 <-------   aggaagatcgagttggatctagcagtcctggatcggattcgaagaagcaaaagacatcaaacggtgatggagatgacggtggcggtgtggatccggattc  17194600  Previous    Next  AGI:  At3g46640.1    Description:  PCL1 (PHYTOCLOCK 1); DNA binding / transcription factor. similar to myb family transcription factor [Arabidopsis thaliana] (TAIR:AT5G59570.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN81044.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO21613.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding (InterPro:IPR014778); contains InterPro domain Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447) Range:  from: 17194075    to: 17195449    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.