Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100              ------>ZmHOX2a(1)          ------>ZmHOX2a(2)        --------->AGP1        <---------ARR14(3)        <---------GLK1(2)        --------->ARR11(3)        <---------ARR11(3)        --------->ARR11(2)        <---------ARR14(2)        --------->ARR14(2)        <---------ARR11(2)        --------->ARR14(3)        --------->GATA12                             --------->ARR11(3)        <---------GATA12                             --------->ARR14(2)      ----------->ARR10                              <---------ARR11(2)    <------NtERF2                                    <---------ARR14(2)    --------->ATERF1(1)                              <---------RVE1(2)   ------>NtERF2                          --------->YAB5   ----------->RAV1(1)            ---------->DOF2    <---------GLK1(2) ------->DOF5.7(1)       <----------DOF2 --------->MYB46(3)                       --------->ANAC46 ------>DOF2--------->LBD16   --------->HSFB2a(2)    --------->ARR11(2)           --------->ANAC58 ---->RAV1(1)           <---------DOF5.7(1)  <---------ATHB12                     --------->ANAC58  - ->ANAC46<------ZmHOX2a(2)    <---------HSFB2a(2)   <---------At4g35610     <-----------GT1        --   aaaggcgccagatcctgaaacaattctcttttctacaaaagaaaccactaattcagatactgaaccaagttcccaaattcacatactcaacacaatttga  7273600                                               <---------------------WRI1                                             --------->WRKY45                                             ----------->HVH21                                             --------->WRKY12                                            --------->DOF5.7(2)           --------->TOE2(3)              <---------MYB46(3)           <----------DOF2         <---------STY1(1)   <---------ARR11(3)            --------->TOE1(3)  <---------KAN1        <-----------RAV1(2)   --------->ARR11(3)           --------->ZAT6<---------DOF5.7(2)      --------->ZAT18 -------->DAG2                <-----------GT1--------->WRKY38(1)--------->MYB52(1)                  - -------->DOF2               <---------KAN1<-------GAMYB       --------->DOF5.7(1)          >>>>>>>>>TBF1   gaaaagttctcaactttagcaaatttcaagagtaaccctagcgctcgttgacgaatcagacaaaaaaaacgactgcccagatggaagaaatgaagaagaa  7273700                                                                               ------>MYB46(1)                                                                     <------ZmHOX2a(2)                                    --------->DOF5.7(1)             --------->GATA12      --------->At4g35610                           <---------HSFB2a(1)                      <---------GATA12   <---------At4g35610                    --------->TOE1(2)                           XXXXXXXXXXXXXXXXXXXX>MIR832-5P                    --------->TOE2(2)                          <---------ANAC46------>MYB83           <---------YAB1---------->DOF2                      <---------At4g35610      --------->ZAT2          --------->AHL20(3)    --------->HSFB2a(2)           --------->At4g35610      <---------ZAT2          <---------AHL20(3)    <---------HSFB2a(2)       ==================HOX2a_HOX2a--------->At4g35610 -------->TOE1(2)   --------->TOE2(3)                     <------ZmHOX2a(1)  --------->MYB46(3)   aacatgagagattataagaaaaccttggaaagctcgagaagagcattttctctgagttcaggattgctgagatcgagtaccaactgttcagcagaggcca  7273800                    <---------GLK1(1)                    <---------At4g35610                    --------->ZAT2                                                            -------                    --------->GLK1(1)                                                         -------                    <---------ZAT2                                                           <-------TEIL                  <------NtERF2                                                             ---------                 <------NtERF2 --------->ARR11(3)                  <---------ZAT18         <---------ARR11(2)                 --------->LBD16                                   --------->ZAT18         <---------RVE1(2)                <---------DEAR3(1)                              <---------ANAC58           <---------ARR14(2)               <---------LBD16 <---------RVE1(2)                --------->ALFIN1           --------->ARR11(1)         <-----------RAV1(1)  <------ZmHOX2a(1)       --------->AtMYB61                    <---------GATA12       <----------DOF2       <------MYB46(1)          <---------ALFIN1                     --------->ARR11(2)      ------>ZmHOX2a(2)      <------MYB83 <---------DEAR3(1)    <---------ANAC58           --------->GATA12      <---------DOF5.7(1)  <--------P     <---------AtMYB61  --------->DAG2                <---------GLK1(2)      ===============================HOX2a_HOX2a     --------->MYB46(3)                    --------->ARR14(2)     <------ZmHOX2a(2)    <---------MYB52(1) --------->ALFIN1--------->DOF5.7(1)          --------->KAN1     ================================HOX2a_HOX2a   <------ZmHOX2a(1)                     <-------TEIL    --------->GATA12--------->At4g35610   --------->ALFIN1 ---------->DOF2               ----------->ARR10    <---------ARR11(3)   --------->LBD16--------->LBD16--------->MYB52(1)               <--------P    --------->ARR11(3) <---------LBD16<---------LBD16<---------ABI4(2)                ----------->GT1   aattgcgatctttgttggccggagctccggtaggattttgtgcggaggtgctaggaccaccgaaaggtgtgcccatggagagagaagaaggtagattcgc  7273900                                                             <---------DOF5.7(1)                                                      --------->ARR11(2)                          <--                                                 --------->ARR14(1)                               <--                                                --------->ARR14(2)                               <---                                                --------->ARR11(1)                              <----                       <---------MYB46(3)       <---------GLK1(2)                           ---------             <<<<<<<<<MYB2                      <---------ARR14(2)                          ---------         <--------P   <---------TOE1(2)         --------->ARR11(2)                       --------->ARR14(2)     --------->LBD16 <---------MYB52(1)<----------DOF2--------->ARR14(2)                 --------->ARR11(2) -->ANAC58 <------MYB83--------->MYB52(2)       <---------ARR11(2)                       <---------ARR14(2) -->ANAC58 <------MYB46(1)      <---------WOX13(2)   *TSS<-----------GT1   <----------DOF2  --------- >ARR14(1)<---------AtMYB61<---------MYB46(3)<---------TOE2(3) <---------DOF5.7(1)       <---------ARR11(2)   cattctccagagttggttttctcgtttgtttgttaatgggacttttcaaggattcggtttctcccttcttctctcttctttatagatggcgattacgccc  7274000                     <---------AtLEC2               --------->AHL12(1)               <---------AHL25(3)               <---------AHL12(3)               --------->AHL25(1)               <---------AHL25(1)               <---------AHL12(1)               --------->AHL12(3)               --------->AHL20(2)              --------->AHL25(3)              <---------AHL20(2)            --------->AHL12(2)            <---------AHL12(2)           --------->AHL20(3)           <---------AHL12(3)           --------->AHL25(1)           <---------AHL20(3)           <---------AHL25(3)           --------->AHL12(3)           --------->AHL12(1)           <---------AHL20(2)           <---------AHL25(1)           --------->AHL20(2)           <---------AHL12(1)      ------>ZmHOX2a(1)     --------->TOE2(3) -------DOF5.7(1)  <-----------GT1                                          <-----------GT1 --------DOF2--------->AHL12(2)           --------->YAB5            <---------YAB1             <----- ------DOF5.7(1)<---------AHL12(2)   --------->AHL25(2)           --------->YAB5              <------ -----DOF5.7(1)<---------AHL20(2)    <---------AHL25(1)           <---------ICU4              ------- >ANAC46  --------->AHL25(3)         <---------AHL25(2)           --------->YAB1             -------- >ANAC58  <---------AHL20(2)         <---------AHL12(3)          <---------YAB5            <---------DOF5.7(1) >ANAC58 --------->AHL12(2)          --------->AHL20(2)          <---------ATHB12         <---------MYB52(1)   ctttcttccttatttatttattttcatgtcaaaacaaaaaaaaatgtttagtttcaaaatagttttaatcatcactatttacgacttaaaccgtttttta  7274100                --------->YAB1               <---------YAB1              <---------AHL25(2)              --------->AHL25(2)              <---------AHL20(3)              --------->AHL20(2)              --------->AHL20(1)              <---------AHL20(2)                                                 <---------WOX13(2)          --------->AHL12(2)                                     <---------WOX13(1)         --------->AHL20(2)                                     <---------WOX13(2)   ----------->GT1      --------->YAB1     <---------YAB5                         --------->WOX13(2)   <---------TOE2(3)     <---------YAB5      <---------ZAT6                    ----------->GT1<---------ZAT18 ----AHL20(2) --------->AHL20(3)                           <---------ZAT6 --------->ZAT18 ---AHL20(2) --------->YAB1        ----------->GT1   --------->DAG2     <---------------AtSPL8 -->AHL25(3) <---------AHL25(3)  ------->MYC3       ---------->DOF2     --------------->AtSPL8 ->AHL12(2)<---------AHL12(2)    <-------MYC3--------->AHL20(2)--------->ATHB12  --------->WOX13(2)   tttgttattcataaattataatatgtagtgatgcatatggtaaacaaataaacaaaaagtagtgttaattggtttgtgtacaaaattaagttataagtta  7274200                                                                                                    -                                                                                                   <-                                                                             <---------TOE2(3)     --                                --------->ANAC46                        --------->YAB5        -------                                --------->ANAC58                       <---------YAB1        <-------                            <---------YAB1                            <---------ARR11(3)--------->ATHB12                         <---------AHL12(1)                           --------->ARR11(3)-------->ATHB1                         --------->AHL20(2)                        --------->AHL20(2)   <---------ICU4                         <---------AHL20(2)                        <---------AHL20(3)   --------->YAB1                       --------->WOX13(2)                          <---------AHL25(3)   --------->YAB5                       <---------WOX13(2)                          --------->YAB1      <---------ATHB12                  <---------GLK1(1)               --------->ANAC58 <---------AHL25(1)  <---------YAB5              --------->ANAC58  --------->ANAC58  --------->ANAC58 --------->AHL20(3)  <---------YAB1              --------->ANAC58---------->DOF2 --------->ANAC58     --------->AHL12(3)  --------->ICU4       ------->TEIL <---------ATHB12          --------->ANAC46     <---------ICU4   <---------AHL20(2)    <---------YAB1--------->GLK1(1)           --------->ANAC58  --------->YAB1    --------->AHL12(2)<   aacaacatgaatgtgaacggaaatcaatttatcaaagcaatggcacataagcaagaaatagttctctaataatatcattaagttttttaatcattgatgt  7274300                                         --------->AHL20(1)                                         <---------AHL25(1)                                         --------->AHL25(2)                                         <---------AHL25(2)                                         <---------AHL25(3)                                         --------->AHL20(2)                                         <---------AHL20(2)                                         --------->AHL12(1)                                         <---------AHL12(1)                                        <---------AHL12(3)                                        --------->AHL25(1)                                        --------->AHL25(2)                                        <---------AHL25(2)                                        <---------AHL25(1)                                        --------->AHL25(3)                                        --------->AHL12(3)                               <---------AHL12(2)                               --------->AHL12(3)                               <---------AHL12(3)                               --------->AHL25(2)                              --------->ARR11(3)                              <---------ARR11(3)                              <---------AHL12(2)                              --------->AHL12(1)                              --------->AHL12(2)                              <---------AHL20(1)                              --------->AHL25(2)                              <---------AHL25(2)                              <---------AHL25(3)                              --------->AHL20(1)                              <---------AHL12(1)                             --------->AHL12(3)                             --------->AHL25(3)                             <---------AHL25(1)                             <---------AHL12(3)                             --------->AHL25(1)                             <---------AHL25(3)                             --------->AHL12(1)                             <---------AHL12(1)                            --------->AHL12(1)                            <---------AHL25(2)                            <---------AHL12(1)                            --------->AHL12(2)                            --------->AHL25(3)        --------->KAN1      --------->AHL25(2)  --------->RVE1(2)         <---------ARR11(3)                               --------->TOE2(2) --------->RVE1(1)          --------->ARR11(3)                               --------->TOE1(2) -------->AHL12(1)          <---------AHL20(3)                              ----------->GT1 --------AHL12(2)           --------->AHL20(1)                    --------->ANAC46--------->ARR11(3) ------->AHL12(2)           --------->AHL20(3)              <---------KAN1  <---------ANAC55(2) ---->GT1                   <---------AHL20(1)   <---------WRKY18(1)        --------->ANAC58 --TOE2(3)       ----------->RAV1(1)    --------->AHL20(2) ------->TEIL     --------->ANAC58 ---------AHL12(1)       --------->AHL20(2)     --------->WRKY38(1)    --------->AtMYB61  --------->ZAT6   aaaatatcacatatgagtccaacataagaaaatatttttaaaaaaaattgttgactgaacgaatttagacggaccaaaacgtaagaactcgaacactaaa  7274400                --------->ARR14(2)                <---------ARR14(2)                --------->ARR11(2)        <---------AHL12(1)        --------->AHL12(1)                --------->HSFB2a(2)                                       <       --------->WOX13(2)             <---------ANAC58                                          <----      --------->AHL12(2)              <---------ANAC58                                          -----    <---------AHL12(3)               xxxxxxxxxxxxxxxxxxxxxx>smallRNA(se3)                       -----    --------->AHL20(2)               <---------HSFC1(2)                                         <----    <---------AHL20(2)          --------->MYB46(3)     <---------AHL20(2)                       -----    --------->AHL12(3)          <------------AtMYB77 <---------AHL12(2)                         -----    --------->AHL25(1)        --------->ARR11(2)    --------->YAB1                              <----    --------->AHL25(3)        <---------ARR11(2)   --------->AHL20(2)                      ----------    <---------AHL25(1)  <---------ARR11(2)<---------HSFB2a(2)     ---------->DOF2--------->DAG2 ----- <---------GATA12    <---------ANAC46--------->HSFB2a(1)---------->DOF2<----------DOF2---------->DOF2 --------->GATA12--------->CCA1(2)   --------->HSFC1(2)--------->AHL20(2)       ---------->DOF2 <----   tgagatttaaattttcaagataggcgtaaatgtaaccgatgcttctgaaacaaataataaaagagttagaaagctttataagaaaagtacaagcggaaaa  7274500  Previous    Next  AGI:  At3g20800.1    Description:  rcd1-like cell differentiation protein, putative. similar to rcd1-like cell differentiation protein, putative [Arabidopsis thaliana] (TAIR:AT5G12980.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO38914.1); contains InterPro domain Cell differentiation proteins, Rcd1-like (InterPro:IPR007216) Range:  from: 7271143    to: 7273953    Orientation: Reverse Links:  TAIR  MIPS  AIP      Please cite the corresponding publications when using AthaMap.