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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
-------
------->
GAMYB
<---------
LBD16
---------
--------->
MYB46(3)
<----------
ID1
---------->
DOF2
<---------
KAN4(2)
--------->
MYB52(1)
---------->
DOF2
----------->
GT1
--------->
ALFIN1
cacactaacagacatgagaaaacaaactcccaatttcccaaaacatggcagaaagacaaaatttgggggaaaaaaagaagagaaattggggcataatcta
3918700
----------->
GT1
--------->
HSFB2a(2)
<---------
HSFB2a(2)
<---------
ALFIN1
--------->
AtMYB61
--------->
MYB46(3)
--------->
TOE2(3)
------>
MYB83
--------->
YAB1
------>
MYB83
------>
MYB46(1)
--------->
TOE1(3)
------>
MYB46(1)
--------->
ANAC46
<-----------
GT1
<----------
DOF2
--------->
GLK1(1)
--------->
MYB46(3)
<-----------
GT1
---------->
ID1
<---------
GLK1(1)
-->
TOE2(3)
--------->
LBD16
<---------
ARR11(3)
--------->
AtLEC2
<---------
ARR14(2)
>
GLK1(2)
<---------
LBD16
<-----------
RAV1(2)
<-------
TEIL
<-----------
GT1
--------->
ARR14(2)
aaacccaccactccggaaaaattttacccagatgttatcttaaatattcattcaaagtttttctcttttttgtttttggagaattctctcaccaacttac
3918800
=========
<--------
<--------
<---------
DAG2
<---------
ARR11(3)
<-----------
ARR10
--------->
ARR11(3)
--------->
ARR14(2)
<---------
ARR14(3)
--------->
ARR14(3)
<---------
AGP1
-
<---------
ARR14(2)
-----------
--------->
ARR14(2)
<------
ZmHOX2a(2)
==========================
HOX2a_HOX2a
===========================
HOX2a_HOX2a
---------->
DOF2
=====================
--------->
ARR11(3)
--------->
ANAC58
<-----------
GT1
<------
ZmHOX2a(1)
<------
ZmHOX2a(1)
<---------
ARR14(2)
--------->
MYB46(3)
<---------
ATHB12
---------->
DOF2
<-
<-----------
GT1
<---------
ARR11(3)
--------->
ANAC58
------>
ZmHOX2a(2)
aatcgaatagcgaaatatcaatagaaaatttcagataaaccacctagaggataagatttcaaatcaaaggataggcaatagagaaagatcttac
cttttt
3918900
--------->
DEAR3(1)
<---------
DEAR3(1)
--------->
ATERF1(1)
------>
ZmHOX2a(2)
<---------
ATERF1(1)
--------->
CCA1(2)
<-----------
HVH21
<------
ZmHOX2a(2)
<---------
O2
--------->
ARR14(2)
--------->
O2
--------->
ARR11(3)
--------->
ANAC46
<---------
AGP1
------>
ZmHOX2a(2)
<---------
ARR14(2)
<---------
ARR11(3)
<-----------
ARR10
<---------
ARR14(2)
--------->
GLK1(2)
--------->
ARR11(3)
---------->
DOF2
<---------
ARR14(3)
--------->
AHL20(2)
=============================
bZIP_DOF
--------->
ARR14(3)
------>
NtERF2
--
DOF2
<------
ZmHOX2a(2)
<------
NtERF2
<---------
ARR11(3)
<---------
ATERF1(1)
-
DAG2
--------->
ARR14(2)
------>
NtERF2
----------->
ARR10
--------->
DEAR3(1)
---------->
HVH21
======================
bZIP_DOF
--------->
ANAC58
------>
AGL1
--------->
TGA1a
--------->
At4g35610
--------->
ANAC58
<------
=============================
bZIP_DOF
<---------
At4g35610
<---------
ALFIN1
------>
ZmHOX2a(1)
----------
HVH21
<---------
TGA1a
----------->
RAV1(2)
----------------------->
TaNAC69(2)
gtgtcacagatcccaataccagacgtcgccgattaaagcctgagcagaagatctgatttttaagaagcccgacttctaacgcctcctccaaaaaattcga
3919000
===================================
HOX2a_HOX2a
------>
ZmHOX2a(2)
<------
ZmHOX2a(2)
<---------
GLK1(1)
====================================
HOX2a_HOX2a
--------->
GLK1(1)
--------->
ARR14(2)
--------->
ARR11(3)
<---------
ARR11(3)
--------->
ARR14(3)
<---------
ARR14(2)
<---------
GLK1(1)
--------->
GLK1(1)
----------->
HVH21
<------
ZmHOX2a(1)
--------->
At4g35610
===================
HOX2a_HOX2a
----------->
RAV1(2)
--------->
At4g35610
------>
ZmHOX2a(1)
<---------
At4g35610
<---------
At4g35610
--------->
LBD16
<-----------
GT1
--------->
YAB1
<-----
----
ID1
====================
HOX2a_HOX2a
<-----------
GT1
<---------
CCA1(2)
------
caaattcagaggaatcacagagatctccgaaaaccctacaaattttccctcctctcagtgtctctctctatcttcacctgacttccctcttctctctcta
3919100
<<<<<<<<<<
E2Fd
<<<<<<<<<<
E2Fc
<<<<<<<<<<
E2Fb
<<<<<<<<<<
E2Fa
<<<<<<<<<<
E2Fe
<<<<<<<<<<
E2Ff
----------->
GT1
--------->
LBD16
<----
--------->
ARR11(3)
--------->
AHL20(1)
--------->
TOE1(3)
<---------
LBD16
<---------
AHL20(1)
<------
NtERF2
<---------
ARR11(3)
--------->
YAB1
--------->
LBD16
<------
ZmHOX2a(1)
--------->
AHL20(2)
<---------
RAP2.6(2)
<---------
CCA1(2)
<---------
LBD16
<---------
ANAC55(2)
---
<---------
YAB1
--------->
TOE2(3)
*
TSS
<---------
LBD16
--------->
LBD16
--------->
ANAC55(2)
<--
----
HSFB2a(2)
--------->
ANAC46
----------->
GT1
--------->
LBD16
<-------
TEIL
------------>
CBF
--->
HSFB2a(2)
<---------
LBD16
---------->
DOF2
<---------
ANAC46
--------->
ANAC46
<-------
TEIL
<---------
AHL20(2)
gaatggggtctgattatgcggcaaaccctaaaaaaggata
tatctcgcgcgggaaaaacaacacggagaatacatacacatacgtatacaattatattcg
3919200
----------->
HVH21
--------->
ANAC58
--------->
LBD16
--------->
ANAC55(1)
<---------
ANAC55(1)
<---
--------->
ANAC58
<---------
ANAC46
-----
--------->
ANAC55(2)
<---------
ANAC58
-----
--------->
ANAC46
--------->
ANAC46
----------->
GT1
<-----
--------->
MYB46(3)
------->
TEIL
<---------
MYB59
<---------
ANAC58
------
<----------
DOF2
<---------
ANAC55(2)
<---------
At5g28300
--------->
ANAC55(2)
<-----
-----
LBD16
--------------->
AtSPL3
<-----------
GT1
<---------
ANAC55(2)
------
------>
ZAT18
<---------
AHL20(2)
<-----------
HVH21
<---------
MYB52(1)
<------
-------
ZAT18
--------->
AHL20(2)
----------->
RAV1(2)
------>
NtERF2
<-----------
RAV1(1)
--------
cgcgctttcaaccactattaaatcgacacgtacccatctgtgacccaattttaccgccaaaacttacttactgttgcgtgaaacgctgagagggaaagat
3919300
<------
NtERF2
--------->
ATERF1(1)
------>
NtERF2
<---------
ANAC46
<---------
LBD16
===========================================
bZIP_DOF
--------->
O2
<---------
O2
--------->
TGA1a
<---------
TGA1a
<---------
MYB52(1)
<------
NtERF2
<---------
REM1(2)
----------->
HVH21
------>
NtERF2
<-----------
HVH21
<-----
<-----------
TGA1
-------
<---------
RAP2.6(3)
--------
--------->
DEAR3(1)
--------
--------->
RAP2.3(3)
--------
<---------
ATERF1(2)
<---------
DOF5.7(2)
<--------
--------->
ANAC46
--------->
DOF5.7(2)
<---------
TGA1a
<--------
--------->
RAP2.6(2)
<---------
PCF2
<---------
ANAC58
<---------
O2
<--------
----
TEIL
<---------
DEAR3(1)
--------->
ZAT18
===============================
RAV
<--------
---->
CCA1(2)
--------->
ALFIN1
----------->
RAV1(2)
=================
bZIP_DOF
---------
---->
ARR14(1)
--------->
ATERF1(1)
<---------
ANAC58
<---------
ANAC46
<--------
----
ARR14(2)
--------->
ALFIN1
<---------
SPL7
---------->
DOF2
<---------
WOX13(1)
--->
ARR14(2)
--------->
MYB52(1)
------>
NtERF2
----------->
RAV1(1)
<---------
YAB1
--
----
GLK1(2)
--------->
MYB46(3)
---------->
DOF2
--------->
ANAC55(2)
--------->
O2
--------->
ATHB12
--->
ARR11(1)
<---------
MYB52(2)
==============================================
bZIP_DOF
<--------
---
HSFB2a(1)
<---------------------
WRI1
--------->
ANAC46
----------->
HVH21
--------->
TGA1a
<---------
--->
ARR10
--------->
LBD16
<---------
ANAC46
--------->
DEAR3(1)
------>
NtERF2
--------->
ICU4
--
tcgccgtcacggcggggtcgaaacaaacggagtgggccattaacgccgtctgggttttcgtgaccgcgacaaagcctcgtgtgagttatgattgggccca
3919400
----
ALFIN1
--------->
At5g28300
-->
MYB46(3)
<---------
LBD16
->
TCP23
<---------
O2
->
TCP15(2)
--------->
TGA1a
<---------
HSFB2a(2)
->
TCP16(2)
<---------
TGA1a
<-------
GAMYB
-
TCP11(2)
----------->
HVH21
<---------
ANAC58
-
ZAT18
<-----------
HVH21
<---------
ANAC58
-
TCP16(1)
--------------->
AGL15
--------->
ARR14(2)
<------
MYB46(1)
<-------
-
PCF5
<---------------
AGL15
<---------
ARR14(2)
<------
MYB83
<---------
YAB1
--------
>
PCF2
<---------
MYB52(1)
--------->
LBD16
<------------
CBF
--------->
HSFB2a(2)
<---------
LBD16
-
TCP15(1)
<---------
ANAC58
--------->
O2
--------->
ANAC55(2)
<---------
MYB46(3)
<---------
ARR14(2)
------->
TOE1(3)
<-----------------
AGL1
<---------
ANAC55(2)
<---------
AtMYB61
--------->
ARR14(2)
-
TCP20
------>
NtERF2
--------->
MYB59
<-----------
GT1
<---------
MYB52(1)
------>
ZmHOX2a(1)
--
TCP11(1)
<---------
ANAC58
=============================================
MYC_MYB
<---------
ZAT18
------->
TOE2(3)
<-----------------
AGL2
--------->
AHL20(2)
<---------
HSFB2a(1)
--------->
ZAT18
cccttaatacgatgccgtttctagtttaggtcacgcgggaaattacatatttgccattgtagaacgtttggttgcagaagtatgagtgtcctatccgcgg
3919500
<
<---------
TGA1a
-
<---------
O2
<-
--------->
O2
<--
<------
ZmHOX2a(2)
--------->
TGA1a
---
<---------
ARR14(2)
--------->
ANAC46
<--
--------->
ALFIN1
<---------
ETT(1)
<--
<---------
ZAT6
<---------
ARR11(3)
<--
<---------
At4g35610
--------->
LBD16
<---------
CCA1(1)
---
--
LBD16
--------->
At4g35610
------>
ZmHOX2a(2)
<---------
RVE1(1)
<--
->
LBD16
*
TSS
<-----------
TGA1
--------->
ARR14(2)
--------->
ARR11(3)
------>
ZmHOX2a(1)
atggattc
agattaagtcttcttcgtcatcttcgagtgtgagtggatccagagagagaattagatatttccgacacgaggcaaattcctagtggctc
atg
3919600
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AGI:
At3g12280.1
Description:
RBR1 (RETINOBLASTOMA-RELATED 1). similar to retinoblastoma-related protein 1 [Populus tremula x Populus tremuloides] (GB:AAF61377.1); similar to retinoblastoma-related protein [Medicago sativa] (GB:AAY23367.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO43963.1); contains InterPro domain Cyclin (InterPro:IPR006670); contains InterPro domain Retinoblastoma-associated protein, B-box (InterPro:IPR002719); contains InterPro domain Cyclin-related (InterPro:IPR013763); contains InterPro domain Retinoblastoma-associated protein, A-box (InterPro:IPR002720); contains InterPro domain Cyclin-like (InterPro:IPR011028)
Range:
from: 3913419
to: 3919140
Orientation: Reverse
Links:
TAIR
MIPS
AGI:
At3g12290.1
Description:
tetrahydrofolate dehydrogenase/cyclohydrolase, putative. similar to tetrahydrofolate dehydrogenase/cyclohydrolase, putative [Arabidopsis thaliana] (TAIR:AT4G00620.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO39977.1); contains InterPro domain NAD(P)-binding; (InterPro:IPR016040); contains InterPro domain Tetrahydrofolate dehydrogenase/cyclohydrolase; (InterPro:IPR000672)
Range:
from: 3919509
to: 3921526
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.