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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<---------
ARR11(3)
--------->
ARR11(3)
--------->
GLK1(2)
--------->
RVE1(1)
--------->
AHL20(2)
<---------
YAB1
--------->
AHL20(2)
--------->
TOE2(3)
--------->
AHL20(1)
<----------
DOF2
------->
TEIL
<---------
AHL20(2)
--------->
ATHB12
-----
DOF2
--------->
ARR11(3)
<----------
DOF2
<---------
AHL20(2)
---
ANAC58
<<<<<<<<<
RAP2.2
<---------
CCA1(2)
<---------
AHL20(1)
<---------
YAB1
---
ANAC58
------>
NtERF2
--------->
CCA1(2)
<---------
ZAT18
<---------
YAB1
<---------
AHL20(2)
tcactttggaaggcgactcgttttag
atatagttcatttgtatcttagtctacttttattttattattaaaaatctcgttttttattggccatttcaaat
15123800
<---------
ANAC55(2)
--------->
ATHB12
<---------
ICU4
--------->
ICU4
<---------
YAB1
--------->
O2
----------->
RAV1(1)
--------->
ANAC58
---------
<---------
HSFB2a(1)
--------->
ANAC58
<--------
--------->
HSFB2a(1)
--------->
ANAC46
----------->
GT1
<<<<<<<<<<<<<<<<<
LFY
--------->
AHL20(2)
--------->
ANAC55(2)
--
<---------
At4g35610
XXXXXXXXXXXXXXXXXXXX>
MIR844
--------->
MYB52(1)
ttttgatttttgtataccatgtattgagcttatataacaatggaacttgccaaaa
tcaaattacttacaagccacatgattacataatggataaaaaaat
15123900
--------->
ANAC58
--------->
ANAC58
<---------
ICU4
<---------
ETT(2)
--------->
YAB1
---------->
DOF2
<--------
HAHB4
<---------
MYB52(1)
--------->
At4g35610
--------->
ANAC46
--------->
ANAC46
--------->
DAG2
--------->
ICU4
<---------
ATHB12
------
>
AHL20(2)
--------->
LBD16
--------->
AHL20(2)
------>
MYB46(1)
--------->
YAB1
-
AHL20(2)
------------------>
SPL14
--------->
YAB1
------>
MYB83
<---------
ATHB12
--------->
AHL20(2)
------->
ZAT6
<---------
ANAC55(2)
<---------
YAB1
--------->
WOX13(1)
--------->
TOE2(3)
aacacaaaaccaagtccgtaaagtatcgacaactaattataagctaagaaaaaaccaatcattttccaagcattgagacttccattcttaaaataagaat
15124000
----------->
GT1
---------->
DOF2
--------->
ANAC58
<---------
ANAC58
<-----------
GT1
------>
NtERF2
--------->
ANAC58
------------>
CBF
<------------
CBF
-----
--->
GLK1(2)
<---------
ANAC58
---------->
DOF2
<-----------
GT1
------------>
CBF
----------->
GT1
atgaggcccaatgggcttggcaagaaagttaaacaaaaaaaagaagaagacaattttacaattttgtcaagttttcaattgaaataaaccggttaaatcc
15124100
--------->
CCA1(2)
<---------
ARR14(2)
<---------
ARR11(3)
--------->
YAB1
<---------
ATHB12
--------->
YAB1
<------
ZmHOX2a(2)
<---------
ICU4
------------>
CBF
<---------
YAB1
====================================
HOX2a_HOX2a
<---------
ICU4
--------->
LBD16
*
TSS
--------->
YAB1
<---------
LBD16
--------->
ARR14(1)
--------->
YAB1
<---------
YAB1
<-----------
GT1
--------->
ARR11(3)
<-----------
GT1
--------->
YAB1
<---------
AHL20(2)
--------->
ARR14(2)
--------->
YAB1
<---------
ICU4
--------->
AHL20(2)
--------->
ARR11(1)
---------->
DOF2
--------->
YAB1
------->
CBF
--------->
WOX13(1)
------>
ZmHOX2a(1)
------>
ZmHOX2a(1)
----
caatttaaaccggatcaatcaagatatggtaatccccttctccttctccaaaa
atcacaactctgttccaagtcttatcctttcatcatcatcatcactt
15124200
--------->
ANAC55(2)
<---------
YAB1
--------->
YAB1
<---------
ICU4
<-------
TEIL
--------->
ARR11(3)
--------->
At4g35610
<---------
ARR11(3)
--------->
ARR11(3)
<----------
ID1
<----------
DOF2
<---------
REM1(2)
--------->
REM1(1)
--------->
At4g35610
--------->
At4g35610
------>
ZmHOX2a(1)
---->
P
<---------
ARR11(3)
<---------
At4g35610
----------->
RAV1(1)
------>
ZmHOX2a(1)
accttcttcacagagagagagcttcatcatcatatgtaatgtgagatgtctcttgaaca
atgcaacaagaagctctctctttcctctcgtcctctctccc
15124300
<---------
ALFIN1
--------->
LBD16
--------->
ANAC58
--------->
ANAC46
--------->
ANAC58
<---------
ICU4
<----------
DOF2
--------->
LBD16
--------->
YAB1
--------->
At4g35610
------>
MYB46(1)
<-----------
GT1
------>
NtERF2
<-----------
GT1
------>
MYB83
<------
<-----------
GT1
--------->
DEAR3(1)
<---------
LBD16
>>>>>>>>>>
MYB80
<--------
--------->
REM1(1)
<----------
DOF2
--------->
REM1(1)
<----------
DOF2
<---------
ALFIN1
<---------
YAB1
ttcccttcaccacaattttccctctctttctcgcctccgcttcaacaattttcccgcactttccttcaaaccaaacacttcatcatcatcttcatcattc
15124400
--------->
MYB52(1)
<-----------
GT1
<---------
ALFIN1
--------->
CCA1(2)
------->
GAMYB
--------->
ANAC46
<-----------
ARR10
--------->
AtMYB61
<<<<<<<<<
GATA-4
--------->
ARR14(2)
--------->
AtMYB61
<---------
MYB52(2)
<<<<<<<<<
GATA-1
<---------
ARR14(2)
<---------
ALFIN1
--------->
MYB46(3)
<<<<<<<<<
GATA-2
<---------
ARR11(3)
--------->
ANAC46
-------->
P
<<<<<<<<<
GATA-3
<---------
LBD16
----------->
RAV1(1)
<---------
MYB55(2)
------>
ZmHOX2a(1)
<---------
ARR14(2)
--------->
ANAC46
------->
GAMYB
--------->
TOE2(3)
--------->
ARR14(2)
<---------
ALFIN1
<---------
MYB55(2)
<---------
ARR14(2)
---
YAB1
--------->
LBD16
------>
ZmHOX2a(1)
--------->
MYB46(3)
<---------
GLK1(2)
--------
-
ICU4
--------->
LBD16
--------->
ANAC46
<---------
MYB111(2)
--------->
ARR14(2)
<---------
At5g28300
ttcaaatccccagatataccctctctctcctccaccacaacaacaacaacaaccaccgaaaccctagaatcctcaatccacgagaaactcatttacctcg
15124500
<---------
MYB52(1)
<-----------
TGA1
<---------
MYB52(1)
<-----------
HVH21
--------->
DEAR3(1)
-----
<---------
ATHB12
<---------
ALFIN1
<-------
GAMYB
-----
--------->
TOE2(3)
--------->
AtMYB61
--------->
ANAC46
-----
<---------
MYB59
------->
GAMYB
------>
ZmHOX2a(1)
------>
NtERF2
<------
--------->
ANAC58
--------->
TOE1(3)
<---------
ALFIN1
--------->
DEAR3(1)
-----------
--------->
ANAC58
--------->
ZAT6
<---------
ALFIN1
--------->
DEAR3(1)
<---------
ANAC55(2)
<---------
LBD16
------>
ZmHOX2a(1)
--------->
MYB46(3)
--------->
ZAT14
--------->
ANAC55(2)
->
TOE2(3)
<---------
GLK1(1)
--------->
MYB46(3)
--------->
ANAC46
--------->
LBD16
<------
NtERF2
-------
attcactcggaatcgatttcctaaccctaatcaaccgtcatccacctctcctctccaccgctctctccgccgttgaatcagtcgtcgattacatgaccac
15124600
============================================
bZIP_DOF
--------->
O2
<---------
O2
--------->
TGA1a
<------
NtERF2
--------->
ATERF1(1)
<---------
ATERF1(1)
--------->
ABI4(1)
------>
NtERF2
--------->
RAP2.3(2)
--------->
RAP2.6(2)
--------->
RAP2.3(3)
--------->
ANAC46
--------->
DEAR3(1)
<---------
ATERF1(2)
<---------
ATHB12
--------->
ATERF1(1)
--------->
ANAC46
---->
ANAC46
--------->
ORA47(2)
--------->
TGA1a
--------->
ANAC58
---->
ANAC58
--------->
DEAR4(2)
==================
bZIP_DOF
--------
---->
ANAC58
<----------
DOF2
--------->
ERF1
<---------
ARR11(3)
XXXXXXXXXXXXXXXXXXXX>
MIR403
---
ALFIN1
<---------
DAG2
--------->
RAP2.3(1)
<-----------
ARR10
<-----------
GT1
<--------
>
HVH21
<-----------
GT1
<---------
RAP2.3(1)
--------->
HSFB2a(2)
<----------
DOF2
--------->
ANAC46
-->
AtMYB61
===============================
bZIP_DOF
--------->
ANAC46
--------->
ANAC58
<-
tccaccaataaacttcactttacaagactttcgccgcctcgtctcaatgtgtccagagcttctcacttcacctttaacctcacacacaatcccagtcatc
15124700
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AGI:
At2g35990.1
Description:
similar to carboxy-lyase [Arabidopsis thaliana] (TAIR:AT5G06300.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN67407.1); contains InterPro domain Conserved hypothetical protein CHP00730 (InterPro:IPR005269)
Range:
from: 15121034
to: 15123855
Orientation: Forward
Links:
TAIR
MIPS
AGI:
At2g36000.1
Description:
mitochondrial transcription termination factor-related / mTERF-related. similar to mitochondrial transcription termination factor-related / mTERF-related [Arabidopsis thaliana] (TAIR:AT2G34620.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO15834.1); contains InterPro domain Mitochodrial transcription termination factor-related (InterPro:IPR003690)
Range:
from: 15124154
to: 15125706
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.