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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                    <---------ICU4
                                ------->GAMYB
                              ------>MYB46(1)<---------ATHB12
      <---------ATHB12        ------>MYB83  ------>MYB46(1)               <---------ATHB12      <---
     ------>MYB46(1)        --------->MYB46(3)                          --------->WOX13(1)   <------
     ------>MYB83        <-----------GT1    ------>MYB83         ------>ZmHOX2a(1)         <--------
 
cttaaaccaatcgactccatacccgatttcaccaactcacaattaccaatcttccttctcttcttctcctcaaaacaatcaatttcatcaagctccacac  13468900
                 ----------->RAV1(2)
                ------>NtERF2
               --------->DEAR3(1)
               ------->GAMYB
               --------->DREB2C(2)
               <---------ALFIN1
              --------->ATERF1(1)
              <------NtERF2
              --------->MYB46(3)                        ------>NtERF2
              --------->ORA47(2)                   <---------At5g28300                         -----
              --------->DEAR4(2)                   --------->SPL7                             ------
             ------>NtERF2                       ----------->HVH21                            <-----
             <---------ATERF1(1)            ------>NtERF2<------NtERF2                        ------
            <---------ALFIN1               <---------ZAT18                                    ------
            --------->DEAR3(1)            <---------RAP2.6(2)                                <------
     <---------ZAT14 --------->AGP1      --------->At4g35610                               <--------
     <---------REM1(2) ------>ZmHOX2a(2) <---------At4g35610        --------->ANAC46  --------->At4g35610
-------DOF2<---------MYB55(2)         --------->LBD16  <---------DEAR3(1)             <---------At4g35610
---ALFIN1  --------->MYB46(3)        --------->ANAC46  --------->DEAR3(1)          <------ZmHOX2a(1)
-ALFIN1  --------->ANAC46      --------->ZAT6 <------------------SPL14   <---------KAN4(2) ---------
 
tttcagtcttcacagccaccgcctgatctagtaaacactcccgtagcggcctcttacggcgacgatagtagacgcgaacaatctcaggacgctgaatccg  13469000
                                                                                    <---------HSFB2a(2)
                                                                                    --------->HSFB2a(2)
                                                                                  ----------->RAV1(2)
       --------->YAB1                                                            --------->GLK1(2)
    --------->YAB1                                                             <---------HSFC1(2)
   <---------YAB1                                                              <---------HSFB2a(1)
---->LBD16                                                                     --------->HSFB2a(1)
--->ANAC46                <-----------HVH21                                    --------->HSFC1(2)
----ANAC55(2)             <-----------TGA1                                     <---------At4g35610
--->ANAC58               --------->YAB1                                  --------->At4g35610
--->ANAC58           --------->MYB46(3)          --------->TOE2(3)     --------->ATHB12
---LBD16       --------->ANAC58              <---------MYB52(1)        --------->YAB1
-ARR14(2)      --------->ANAC58         <---------ALFIN1              <---------ATHB12
>ARR14(2)     --------->SPL7      --------->ZAT6 --------->TOE1(3)  --------->WOX13(1)
 
caacttataatcatccgaacgacaacaatcgtcactagcactaacaccgctaccttcaatctcgaattgctcaatcatcggaagcttctgggccttaacc  13469100
                                     --------->At4g35610
                                     --------->ZAT14                                           -----
                        --------->ANAC58                                                       -----
                        --------->ANAC46                                                       <----
                        --------->ANAC58                                                       -----
                       ------>MYB46(1)                                                         <----
                       ------>MYB83  <---------ZAT14                          <---------GLK1(2)-----
                      --------->MYB52(1)                         <---------ARR14(2)            <----
                     --------->AtMYB61                           <---------ARR11(3)      <---------ARR14(2)
                    --------->DEAR3(2)                           --------->ARR14(2)      --------->ARR14(2)
                    --------->MYB46(3)                           <---------GLK1(2)       <----------
      <---------At4g35610          --------->ANAC46              --------->ARR11(3)      --------->GLK1(2)
      --------->At4g35610------->GAMYB                         ----------->ARR10 --------->YAB1<----
 
ttcttagacatcagactgtgagaaccaacggcattaacacagcacaatgccgatgaaggaatagagtagatactctcaatagaatcgtagcgaatcggag  13469200
        ------>ZmHOX2a(2)
      --------->ARR11(3)                                       <---------LBD16
--------->ZAT6                                  --------->bZIP60(2)
---->HSFB2a(1)                       <---------MYB52(1)      --------->KAN4(2)
---->HSFC1(2)                       --------->TOE2(3)       --------->KAN4(1)
-----HSFB2a(1)                     <---------ANAC58         <---------KAN4(1)
---->ZAT2                          <---------ANAC46        <---------KAN4(2)
-----At4g35610                     <---------ANAC58  --------->AtLEC2
---->At4g35610             ------>ZmHOX2a(2)    --------->ANAC46                                  <-
-----ZAT2                <---------ARR14(2)     --------->ANAC58                           ---------
-ARR10<---------ARR11(3) <---------AGP1         --------->ANAC58                       <---------ANAC46
-----HSFC1(2)            --------->ARR14(2)     --------->ANAC55(1)      ---------->DOF2  ----------
 
cttccactagatcgtggacatcaatttcgatctgggtttcgttagaaaaacacgccatggagattattcggagggagaaagcacagggcttcgtaaagga  13469300
                                                             <---------ANAC58
                                                  <---------ANAC58
                                                  <---------ANAC58                             -----
                                            --------->AHL20(1)       ----------->GT1       ---------
                                      --------->LBD16        <---------ANAC46              >>>>>>>>>TBF1
  <----------DOF2             --------->ANAC46<------------CBF    <---------ANAC46     <------ZmHOX2a(1)
--------ALFIN1              --------->ZAT6  --------->AHL20(2)    <------------CBF   <---------TOE2(3)
>DAG2                    <----------DOF2    <---------AHL20(2)<---------LBD16  <---------TOE1(3)
>DOF2  <---------ZAT18------>ZmHOX2a(1)    --------->AHL20(2)<---------ANAC58  <---------TOE2(3)
 
gacacctttgctcactctctctatccttctttcactaaacccccaaaaaaattgctagggaatttcgtggattggagaaattagggtttaggaagaagaa  13469400
                                                                 ------>NtERF2
                                                                 --------->LBD16
                     <------ZmHOX2a(2)                          <---------ANAC46                  --
                    --------->ARR14(2)                         <---------LBD16                    ==
                    <---------GLK1(2)                          <------NtERF2                     <--
                    <---------ARR11(3)                --------->ANAC55(2)                        ===
                    --------->ARR11(3)                <---------ANAC58                          ----
        <----------ID1                                <---------ANAC58                          ----
        ----------->GT1 ------>ZmHOX2a(1)           <-----------GT1                             <---
       ----------->GT1  <----------DOF2        <----------DOF2------>NtERF2                     <---
     --------->DAG2 --------->AGP1   --------->At4g35610     --------->ANAC46                   <---
    ---------->DOF2 <---------ARR14(2)   ----------------------->TaNAC69(2)               <---------
---->GLK1(2)   --------->MYB52(1)   --------->GLK1(2)<---------TOE2(3)           <---------YAB1 ----
--------------->ANAC81------>ZmHOX2a(2)  ---------->DOF2    <---------LBD16<---------TOE2(3)   <----
 
tcagagaaaaagggaaaaaaacagatcctttggagggagaagctaaaaggcttttttacgtttcccgccgggtttattaagatgatgacaagtctttcag  13469500
<------------CBF
---->ZmHOX2a(2)                                                                  ----------->GT1
=====================HOX2a_HOX2a                                             --------->ARR14(2)
----ZmHOX2a(2)                <-------TEIL                                   <---------ARR14(2)
=====================HOX2a_HOX2a                                             <---------ARR11(3)
----->AGP1                --------->LBD16                                    --------->ARR11(3)
----->ARR14(2)          <---------LBD16                                  --------->AHL20(2)
------AGP1          --------->ARR11(3)            <---------ANAC58       <---------AHL20(2)
------ARR11(3)      <---------ARR11(3)            <---------ANAC58   --------->ICU4
------ARR14(2)     <---------CCA1(2)   --------->YAB1          ------->TEIL --------->RVE1(1)
-DOF2            ----------->TBP      <-------TEIL--------->ALFIN1  <---------AHL20(2)  --------->YAB1
----->ARR11(3)------>ZmHOX2a(1)   <-------TEIL  <---------ANAC46  <---------AHL20(2)>>>>>>>>>GT-1
-----CCA1(2)  --------------------->WRI1 <-----------TBP   ------->TEIL --------->AHL20(2)
 
atctattgctctgtctccttatatatctccgcatacatacattcatatatagtgtgtgtgtgtatgtatataaaaattaatatctggttaataaaaacat  13469600
                           --------------->AGL15
                           <---------------AGL15
                          ----------------->AGL3
                          ----------------->AGL2
                   --------->YAB1
                  --------->AHL20(2)               <-------GAMYB<---------AHL20(1)
               --------->AHL20(2)                  <---------MYB52(1)
              --------->AHL20(2)                  --------->LBD16
              <---------AHL20(2)                 --------->LBD16<---------AHL20(2)
          <---------AHL20(2)                    <---------LBD16 --------->AHL20(2)
          --------->AHL20(1)     --------->HSFB2a(2)      --------->ANAC55(2)
          --------->AHL20(2)     <---------HSFB2a(2)      <---------ANAC55(2)
       --------->YAB1 <---------ICU4      --------->AHL20(2) ------->TEIL         <----------DOF2
 
ataaaactaaaaataaaataaataaaaattccacttgtagaaaaaaaaaatcccggttgtcatgtattttattttcaacaagagtcttttttttttgggc  13469700
                        --------->AHL20(2)
                     <----------DOF2                                     <---------ICU4
                 <---------GLK1(2)                     <-----------GT1   --------->YAB1
         <---------GLK1(2)                <---------At4g35610    <---------ANAC46                ---
 
aaaattcaacaagagtctctgattcttttatatagttttgttttcagataattgttgtttaccagtttttgtgtaatcttcactacatggaatttgtttt  13469800
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AGI:  At2g31650.1   
Description:  ATX1 (ARABIDOPSIS HOMOLOGUE OF TRITHORAX); histone-lysine N-methyltransferase/ phosphatidylinositol-5-phosphate binding. Identical to Histone-lysine N-methyltransferase, H3 lysine-4 specific ATX1 (ATX1) [Arabidopsis Thaliana] (GB:Q9C5X4;GB:Q84WP4;GB:Q9SIP3); similar to trithorax protein, putative / PHD finger family protein / SET domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G05830.2); similar to trithorax protein, putative / PHD finger family protein / SET domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G05830.1); similar to trithorax-like protein, histone-lysine N-methyltransferase [Physcomitrella patens subsp. patens
Range:  from: 13462349    to: 13469258    Orientation: Reverse
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.