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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<---------
ARR14(2)
--------->
ARR14(2)
<-----------------
AGL1
<---------
ARR11(3)
----------->
GT1
<---------
RAP2.6(2)
<---------
DEAR3(1)
<-----------
RAV1(1)
-------
ANAC58
------>
ZmHOX2a(2)
<---------
AHL20(2)
<-----
-------
ANAC58
<---------
ARR14(2)
--------->
TOE2(3)
<-----
-
GT1
<---------
ZAT18
--------->
ARR14(2)
--------->
YAB1
<---------
RAP2.6(3)
gcttgaagagcaatttgttcacttgagttagaagttgaaaatgaattgttttggatcggtgagttaaaactatcttaaattgtggccgatttggcaatat
27494400
<---------
ARR11(3)
--------->
ARR11(3)
<---------
GLK1(1)
--------->
GLK1(1)
<---------
GLK1(2)
<---------
YAB1
--------->
GLK1(2)
----------->
ARR10
<----------
ID1
<-----------
GT1
----------->
GT1
<---------
YAB1
--------->
YAB1
--------->
ANAC46
--------->
ANAC55(2)
----
AHL20(1)
<---------
GLK1(2)
------>
ZmHOX2a(1)
<---------
ZAT6
--------->
YAB1
<--------
----
ARR11(3)
--------->
ARR11(3)
<----------
DOF2
<---------
YAB1
<---------
ANAC55(2)
atgttgtaagtagtaagattctgattc
tgatatccttttaagacaaattatactagtattacaagactcaatcttcttacataatacaaaattcagttca
27494500
<-----------
GT1
--------->
HSFB2a(2)
<---------
HSFB2a(2)
<---------
ARR11(3)
<---------
AHL20(1)
--------->
AHL20(2)
<----------
DOF2
--------->
YAB1
--------->
AHL20(1)
>>>>>>>>>
CBP60g
----------->
GT1
--------->
ARR11(3)
--------->
CCA1(2)
>>>>>>>>>
SARD1
<------
ZmHOX2a(1)
--------->
CCA1(1)
--------->
ARR11(3)
-
At4g35610
----------->
GT1
--------->
YAB1
--------->
RVE1(1)
<---------
ARR11(3)
<-----
tggttcgaaatttggagtaaaaaggattgaaataataaaaaaaacattcaaatatcttttggaaataacaagatatatgactctgttttcatgtatagat
27494600
<---------
MYB46(3)
----------->
GT1
<---------
ANAC46
<---------
MYB46(3)
--------->
ZAT14
--------->
ALFIN1
<---------
bZIP60(1)
<---------
AtMYB61
--------->
bZIP60(1)
--------->
DAG2
<---------
AtMYB61
----------->
GT1
---------->
DOF2
<----------
DOF2
--------->
DAG2
---------->
DOF2
----
GLK1(2)
--------->
ATHB12
---------->
DOF2
--------->
ANAC46
---------->
DOF2
<--------
tgttgtgcatcatctttcattggtggtggataaaaaaaaaaaagtgacaacagtttacacgaagaccgaaagaaaggaaaggtagcaataggttgtgtaa
27494700
--------->
ANAC58
--------->
ANAC58
----------->
TGA1
----------->
HVH21
<---------
DEAR3(1)
<---------
ANAC46
<---------
LBD16
<------
NtERF2
--------->
ATERF1(1)
<---------
RRTF1(1)
<---------
ERF1
------>
NtERF2
<---------
RAP2.3(1)
<---------
RAP2.3(2)
<---------
RAP2.6(2)
<---------
RRTF1(3)
<---------
ATERF1(2)
<---------
DEAR3(1)
--------->
ANAC46
<---------
RAP2.3(3)
--------->
ANAC58
<---------
RRTF1(2)
--------->
ARR14(2)
--------->
ANAC58
--------->
ATERF1(2)
<---------
GLK1(2)
<---------
ICU4
----------->
HVH21
------->
GAMYB
<---------
YAB1
--------->
GLK1(2)
<------
NtERF2
------->
TEIL
<---------
ARR14(2)
-
<---------
ICU4
--------->
ARR14(2)
<---------
At4g35610
--------->
MYB46(3)
-
<---------
At4g35610
<---------
ARR14(2)
--------->
At4g35610
--------->
MYB52(1)
---
-
ANAC46
--------->
YAB1
<---------
GLK1(2)
--------->
LBD16
<---------
CCA1(2)
------
gaaaatttcatctcatcatcattttcaagacacagaatatggttttgacggcggagatgacgcaaacgtgaatctaacggaccgtattctctctgtaaca
27494800
--------->
ANAC46
--------->
ANAC55(2)
--------->
ANAC58
--------->
ANAC58
--------->
ANAC55(1)
--------->
ZAT14
<---------
ARR14(2)
<---------
ZAT14
<---------
ANAC58
--------->
ARR14(2)
<---------
ANAC58
<----------
DOF2
<<<<<<<<<<
WRKY63
<---------
ANAC58
----->
MYB46(1)
--------->
At4g35610
<---------
DEAR3(1)
<----------
DOF2
----->
MYB83
----------->
RAV1(2)
---------->
DOF2
<---------
O2
<---------
ANAC58
------>
AtMYB61
<---------
At4g35610
*
TSS
<---------
TOE2(3)
<---------
REM1(2)
===========
--->
ZAT6
<---------
ANAC58
----------->
GT1
<----------
DOF2
<------
NtERF2
<---------
ANAC58
ccaacgtcttttgcttatttcatctgtagcaaatagtcaaatct
gaaaatgctttaatgaaagggcgtctctgtacacgtagccacttgcttctttcact
27494900
<------
ZmHOX2a(1)
<-----------
TGA1
<-----------
HVH21
--------->
TGA1a
<---------
LBD16
--------->
O2
--------->
YAB1
<---------
TGA1a
<---------
At4g35610
================================
bZIP_DOF
--------->
YAB1
<xxxxxxxxxxxxxxxxxxxx
smallRNA(le3)
------>
ZmHOX2a(1)
<---------
ZAT18
<-----------
GT1
================
bZIP_DOF
<----------
DOF2
<---------
MYB52(1)
<---------
LBD16
<-----------
GT1
ctctctctctcgtcaggaatcgtctctgctctttcatcatcctccg
gtctctctctccctctctctaattcggagcgctaatttctgttttatcatcttc
27495000
====================================
HOX2a_HOX2a
<
------>
ZmHOX2a(2)
--
<------
ZmHOX2a(2)
<--
=====================================
HOX2a_HOX2a
<---
<---------
ARR11(3)
<---
<---------
ARR14(2)
=========================
--------->
DAG2
----------->
GT1
--------->
LBD16
<---
--------->
AHL20(2)
--------->
DAG2
------>
ZmHOX2a(1)
----
<------
MYB46(1)
--------->
ARR11(3)
<----------
DOF2
----
<------
MYB83
---------->
DOF2
---------->
DOF2
=========================
--------->
MYB59
--------->
ARR14(2)
<---------
DAG2
----
<---------
AtLEC2
--------->
AHL20(2)
--------->
AtLEC2
<-----------
GT1
--------
ttgagggttcttctagttgcatagctaggtctaaataaaaaagtagggatcttgatgcaaaaaggaaacttttttttcctggtttccctaggcatgaaag
27495100
<------
MYB46(1)
<------
MYB83
<---------
AtMYB61
<---------
MYB52(1)
-----------
RAV1(1)
---->
ZmHOX2a(2)
----
ZmHOX2a(2)
------
ARR14(2)
------
ARR11(3)
--------->
ANAC58
=====
HOX2a_HOX2a
<---------------------
WRI1
------
AGP1
--------------->
AGL15
<--------
----->
ARR11(3)
<---------------
AGL15
--------->
DAG2
----->
ARR14(2)
<----------
DOF2
----------------->
AGL1
--------->
ANAC58
====
HOX2a_HOX2a
<----------
DOF2
--------->
ARR11(3)
--------->
ANAC58
---------->
DOF2
----->
AGP1
<---------
ZAT18
<---------
YAB1
<---------
LBD16
--------->
ANAC58
-->
DOF2
<-----------
RAV1(1)
<-------
TEIL
<-----------
GT1
<---------------
atctgttggtgtttagaatttgtgggcttcaattactttgacttctaggttgatgattttgttacattttgggggaagtaatctatgaacgaaaagcaca
27495200
<---------
TOE2(3)
<----------
DOF2
--------->
DAG2
<---------
DAG2
--------->
MYB59
------>
ZmHOX2a(1)
<---------
TOE1(3)
<---------
CCA1(2)
--
ID1
<---------
ANAC58
------->
TEIL
---------->
DOF2
------
WRI1
<---------
ANAC58
<-------
TEIL
--------->
AtLEC2
--------->
GLK1(1)
aactgctatgtattccttacgaagcgcttttagatgcatttaggttttatgcaaaaagtcccataacttgttgtctgatatcaaagttttcattttggga
27495300
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AGI:
At1g73090.1
Description:
similar to unnamed protein product [Vitis vinifera] (GB:CAO23197.1)
Range:
from: 27491878
to: 27494427
Orientation: Forward
Links:
TAIR
MIPS
AGI:
At1g73100.1
Description:
SUVH3 (SU(VAR)3-9 HOMOLOG 3). Identical to Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3 (SUVH3) [Arabidopsis Thaliana] (GB:Q9C5P4;GB:Q9SSL7); similar to SUVH1 (SU(VAR)3-9 HOMOLOG 1) [Arabidopsis thaliana] (TAIR:AT5G04940.1); similar to SUVH1 (SU(VAR)3-9 HOMOLOG 1) [Arabidopsis thaliana] (TAIR:AT5G04940.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO46198.1); contains InterPro domain Pre-SET zinc-binding region; (InterPro:IPR007728); contains InterPro domain SRA-YDG (InterPro:IPR003105); contains InterPro domain Post-SET zinc-binding region; (InterPro:IPR003616); contains InterPro domain Pre-SET zinc-binding
Range:
from: 27494845
to: 27497843
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.