Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                             --------->ATHB12                                                          <---------YAB1                   --------->ETT(2)                                                      <---------ARR11(3)                   <---------ETT(2)                                                      --------->ARR11(3)             ------>ZmHOX2a(1)                                   <-------TEIL      <---------CCA1(2)       --------->ANAC58                           --------->ANAC55(2)       <---------GLK1(1)       --------->ANAC46         ------->TEIL     <---------TOE2(3)     <----------DOF2              --------->ANAC58      <-   gacaaaacatgaaactgaaaaccgaatttatgtaacatacatattgcattctttgatatcttcattggtatgtttatacacacaatcctgctctcgacat  10775000                                                                         <---------DAG2                                                                      <---------ALFIN1                                                                     --------->ATERF1(1)                                                                     ----------->HVH21                              <---------SPL7                         <------NtERF2                          ------>ZmHOX2a(2)                         <-----------HVH21                        --------->ARR14(2)                          <---------ATERF1(1)                 --------->RAP2.6(3)                                <-----------TGA1                --------->MYB52(1)    <---------DAG2               <---------ANAC58          --------          ----------->GT1<------ZmHOX2a(2)                     <-----------RAV1(2)           --------          --------->LBD16--------->RAP2.6(3)                 ----------->RAV1(1)             --------        <---------LBD16 <---------ARR14(2)      ----------->HVH21  <---------ANAC58--------->ANAC46 --------At5g28300--------->ANAC46    <----------DOF2    --------->GLK1(1)<----------DOF2<---------HSFB2a(2)   tcaccgtataaccggaaaaaacggcagatcggcatacgagctttatcgaactgatggagaaacccacaggcgtcacctttcatacacagacctcgaagcc  10775100                                                       --------->LBD16    <------MYB46(1)                                                      <---------ANAC46    <------MYB83                                                  <-----------HVH21      --------->MYB111(1)      <--                                                 --------->DEAR3(1)      --------->MYB46(2)  <-------                                                <------NtERF2            --------->MYB111(2) --------                                                --------->MYB46(3)       <---------DEAR4(1)  <-------                                                --------->DEAR3(2)       <---------DREB2C(2)<--------                                               ------>NtERF2             <---------DEAR3(1) ---------                                              <---------ALFIN1           <---------MYB46(3)<---------RAP2.3(1)                                              --------->DEAR3(1)        <---------ORA47(1)<---------RAP2.3(2)                                      --------->At4g35610             <------MYB83--------->TOE1(3)                             --------->ANAC46--------->MYB46(3)       <------MYB46(1)<---------DOF5.7(2)                            -------->P<---------ZAT2  <------NtERF2  <---------TOE2(2)    <---------DEAR3(1)                      <---------HSFC1(2)     <---------MYB55(2)      <---------AtMYB61   --------->At4g35610                      <---------HSFB2a(1)  --------->ANAC58       ------>ZmHOX2a(2)--------->DOF5.7(2)  <---------ETT(2)    --------->HSFB2a(1)  --------->ANAC58    --------->YAB1--------->ABI4(2) <----- ->ANAC58             --------->HSFC1(2)   --------->ANAC46  <---------KAN4(2)    --------->TOE2(3) ->ANAC58       <---------LBD16       <---------At4g35610   --------->YAB1<---------DEAR3(2)<------NtERF2 ->ANAC46     ----------->HVH21       --------->ZAT2 <---------LBD16 <---------TOE1(2)   <---------At4g35610   agtgtctacaaacagtttgacggaaacttctacccctcccagctccagccaccgtcgcggaagaatgatcgtaggtcggtgctacgttaacagcggcgga  10775200                          --------->ANAC58                         --------->SPL7                       ----------->HVH21                      --------->LBD16                     ------->GAMYB                    <---------LBD16                   --------->MYB52(1)             <---------HSFB2a(2) ----ZmHOX2a(1)    -------->P                     --------->HSFB2a(2) --DEAR3(1)      --------->MYB46(3)              <---------LBD16 ->ALFIN1     <------NtERF2                      <-------TEIL --------->RAP2.6(2) --ANAC46   <---------DEAR3(1)                 <---------ARR14(2)                            -------- -LBD16     --------->ALFIN1        <---------ZAT14     --------->YAB1                     --------->At4g35610 >ATERF1(1)<---------LBD16--------->ANAC58     --------->ARR14(2)                     --------->WOX13(1) -NtERF2<-----------RAV1(2)         --------->ZAT14--------->LBD16                   <-------TEIL----   ggaagagttttcaggcggagcaaccgggacggaagcggtgttctgaacaggtccggaatcaagaccgccttcgaaatcgaagctaagtccatcagcatcc  10775300                                                         <---------ARR14(2)                                                         --------->ARR14(2)          --------->ARR11(3)                 <------ZmHOX2a(2)          <---------ARR11(3)                 ==================HOX2a_HOX2a         <------ZmHOX2a(1)                  <---------ARR11(3)   --------->GLK1(2)       <---------TOE2(3)           --------->MYB52(1)   <---------HSFB2a(1)                       ---       <---------TOE1(3)         <---------MYB52(2)     <------ZmHOX2a(1)                 --------->MYB46(3) ->ARR14(2)                    --------->MYB52(1)     <---------TOE2(2)             *TSS<-----------GT1 -->ZmHOX2a(1)             <---------------------WRI1 <---------TOE1(2)            ----------->GT1<--   tccattgctaaggatttttctagggtttggaagaaacgaacagagagatcaaatcggaggattcgagcttctgatgttagaaacaaggtttaacgactca  10775400                                                                             <-------TEIL                                                                          <---------DEAR3(2)                                                                         <---------DEAR3(1)                                                                         <---------DREB2C(2)                                                                         --------->ETT(1)                                                                        ---------->ID1                                                                  <---------AHL20(2)                                                                  --------->AHL20(2)                                                                 <---------AHL20(2)                                                              --------->AHL20(2)                                                              <---------AHL20(2)                                                             --------->AHL20(1)                                                             <---------AHL20(1)                                                             --------->AHL20(2)                                                        --------->At5g28300  --------->ZAT14     <-------TEIL               <---------MYB52(1)      <---------MYB52(1)<---------MYB46(3)     ---- ------>ZAT2           <------------CBF                ----------->GT1<-----------RAV1(1)      ------ -------ZAT2        --------->YAB1        ----------->GT1    <---------AHL20(2)              <-------   agctcggttcatcgtataactatcagattgaaccggtatttgaacggtttattaaaccggtaatttatttatttgtcggttcagtatttgtgttttaacc  10775500                                                                     <---------DAG2                                                                     --------->TOE2(3)                                                                  <-----------GT1                                                                -------->HAHB4                          ----------->GT1                    --------->YAB1                         <                        <---------ZAT14              <---------ATHB12--------->TOE1(3)              <               --------->ARR14(2)              --------->ANAC58 <---------ICU4                      -            <---------ANAC58                   --------->ANAC46 --------->YAB1                  <---- ------>DOF2<---------ANAC58               <-----------GT1----------->GT1                       ----- --->MYB46(3)  <---------ARR14(2)   <-----------GT1  ----------->HVH21                      --------- ----GT1    <---------ANAC46     <---------ICU4--------->ANAC58--------->ICU4   <-----------GT1------   aaagtcatctcgtttcgtatacagagtattgtgaatttttacaaattacaagtcaatgaccagtaataataccttatcaaataaactttcttcttgattt  10775600                                                                              <---------ANAC58                                                                              <---------ANAC55(2)       <---------YAB1                                              --------->YAB1    <-----------GT1                                                <---------AHL20(2) <---------AHL20(2)                                                --------->AHL20(2)      <xxxxxxxxx ---------AHL20(2)                                              --------->YAB1--------->ANAC55(2) ---------AHL20(1)                                             <---------YAB1 <---------ANAC58 -------->AHL20(2)                                            --------->AHL20(2)           --------->AHL20(2) -----AHL20(2)                                                <---------AHL20(1)           <---------AHL20(2) ---->AHL20(2)                                  <-----------GT1<---------AHL20(2)  --------->ZAT6 >ATHB12                   <-----------GT1  <---------AHL20(2)--------->AHL20(1) --------->SPL7------ --->AHL20(2)           <---------ICU4  --------->YAB1       --------->YAB1   <---------ANAC46 <-----   aatttttttctcattgttctctaaactaattacattctccagtcatattatttccatctccaaatataataatatgaattgcgtaagactaatataaata  10775700                                                                                           --------->LBD16                                                                                          --------->LBD16               <-----------HVH21                                                   ---------->DOF2            <---------LBD16 xxxxxxxxxxxxxxxxxxxxxxx>smallRNA(fl3)         <---------ARR11(3) xxxxxxxxxxxxxsmallRNA(l2)  --------->ALFIN1                          ---------->DOF2    <---------LBD16 --->AHL20(2) --------->LBD16        ---------->DOF2           >>>>>>>>>TBF1      <---------ATHB12 ----AHL20(2)<xxxxxxxxxxxxxxxxxxxxxxxsmallRNA(fl3)     <---------MYB46(3) --------->ARR11(3)   aatccatcgcattctccggtcatattagaagtaggggagaaaagaaaaccatttggattgttgaagaagaaggaaagctctccaataaagccccggtttc  10775800                        ------>ZmHOX2a(1)                    <---------ARR14(2)                    --------->ARR14(2)                                         ---------->DOF2                   --------->GLK1(1)                                         <---------ZAT6                  <---------MYB52(1)                              <------ZmHOX2a(1)                <-                --------->LBD16                            <xxxxxxxxxxxxxxxxsmallRNA(i)  ----------->GT1               <---------LBD16                          xxxxxxxxxxxxxxxxxxxx>smallRNA(le3)        ---             --------->ZAT2                           xxxxxxxxxxxxxxxx>smallRNA(i)       <xxxxxxxxxxx             <---------ZAT2      <-------TEIL    --------->ARR14(2)  <---------MYB59    <------ZmHOX2a(1)          xxxxxxxxxxxxxxxx>smallRNA(i)           <---------ARR14(2)<xxxxxxxxxxxxxxxxxxxxxxsmallRNA(se3)   aaaaacttttgtctcagcccggtatcctgttgagtttcattcggattactatatccgttttagacttaggaccgaaatagtgaaagccgaggagtcaaaa  10775900  Previous    Next  AGI:  At1g30460.1    Description:  ATCPSF30/CPSF30; RNA binding / calmodulin binding / endonuclease/ nucleic acid binding / protein binding. similar to YT521-B-like family protein [Arabidopsis thaliana] (TAIR:AT4G11970.2); similar to YT521-B-like family protein [Arabidopsis thaliana] (TAIR:AT4G11970.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO40412.1); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571); contains InterPro domain YT521-B-like protein (InterPro:IPR007275) Range:  from: 10770795    to: 10775384    Orientation: Reverse Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.