Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                           ---------->DOF2                                                                      --------->RAP2.6(2)                                                                    <---------At4g35610                                                                    --------->At4g35610                                                                    ------>NtERF2                                                                  <-----------RAV1(2)                                                                  --------->ATERF1(1)                                                                 <---------ZAT18                                                                 <---------At4g35610                                                                 --------->ZAT14                                                              <------MYB83                                                              <------MYB46(1)                                                              --------->At4g35610              <XXXXXXXXXXXXXXXXXXXXMIR870                    <-----------RAV1(1)          --------->ATHB12                                   <---------DEAR3(1)          <------------ATHB5                                 <---------MYB46(3)          -------->ATHB1                                     =================RAV                 <--         <---------YAB1                                     <---------ANAC58                      ---         --------->ICU4                                     <---------ANAC58         --------->ANAC58         <---------ATHB51                                   <---------ANAC46         --------->ANAC55(1)         <---------ATHB12                 --------->ZAT6 <---------RAP2.6(2)         --------->ANAC46      ------------>ATHB5         --------->HSFB2a(2)   =======================RAV    --------->ANAC58 -------YAB1<---------WOX13(1)   --------------->AGL15 <-----------RAV1(1)           --------->ANAC55(2) -ARR11(3)<---------ICU4         <---------HSFB2a(2)<-----------RAV1(1)<---------RAP2.6(3)   <------- >ARR11(3)<--------ATHB1      <-----------GT1       ==========================RAV    <---------ANAC55(2)   gtgattcagcaatgattgaagagagagcaaatttaccagaaatatcactacaacctgttgtggctggtgcagccgaaaagacttctcacgcaatcggcag  2702900   ------->GAMYB  --------->MYB46(3)        --------->LBD16 --------->ANAC58         <---------LBD16                                   --------->ALFIN1 --------->ANAC58       <-----------GT1                                     ----------------------->TaNAC69(2) -------ZAT18    ------->TEIL                                             <---------ANAC46 ------>ZAT14 <---------ATHB12  <------ZmHOX2a(1)                         <---------ANAC58 --------------WRI1 <---------YAB1           <---------YAB1               <---------ANAC58   <-------   tgcaaccaagagactaatgaacattataaccggaggaaacaaggatgaagattagacatttagaagttttcacttggagtgtgtttttggtccgtctttg  2703000                         --------------->AGL15                         <---------------AGL15                        <-------TEIL                        ----------------->AGL1                        ----------------->AGL2                        ----------------->AGL3                        <-----------------AGL1                              <------MYB83                        <-----------------AGL2                              ----------->GT1     <----                    --------->DAG2                                         --------->MYB59  ---------                   ---------->DOF2         --------->GLK1(2)      ----------->GT1     <---------YAB1 ---DOF2        ----------->GT1           <---------GLK1(2)  <----------DOF2<------MYB46(1)----------   tttgaagggattagtacaaggtaaagtccatttagggaaacagagaatctatgaacaagaagactttttagtaaaatttggtatatttatgaaacctgaa  2703100                                                                                          -----------                                                                                          <---------RAP2.6(3)                                       --------->MYB46(3)                                 ------>NtERF2                                     <---------ALFIN1                                    --------->RAP2.6(2)                                     ----------->RAV1(1)            --------->AHL20(2)   --------->DEAR3(1)                                  ------->GAMYB                  --------->At4g35610     <---------ETT(1)                                  --------->ANAC46            --------->At4g35610        <----------ID1                               --------->MYB52(1)             <---------At4g35610       --------->DEAR3(2) -----ANAC46                <---------ICU4                   ----------->RAV1(1)      --------->ANAC58 >TOE1(3)                   --------->YAB1                   ------->GAMYB            --------->ANAC58 ->RAV1(2)       ---------->DOF2 --------->MYB46(3)       ----------->RAV1(1)  --------->ANAC55(2)   gtgtaactgtgtaagacacaaaagaagaaataataacagccacagccattttaagatgtacaacagcagataaaatagtttacataacaagccgacaaaa  2703200                                       --------->ICU4                                     ---------->DOF2    <---------WOX13(1)                                <----------DOF2        <------------CBF                            --------->WRKY38(1)       --------->ATHB12   --------->AHL20(2)                            --------->WRKY12         <---------YAB1    ----------->GT1       --------                          <---------ANAC58         <---------ZAT6<----------ID1             --------- >RAV1(1)                 <---------ANAC58 ----------->GT1   <------------CBF        ---------->DOF2   aaaaaaaactattctattcttacatatgggttgactttgcaaagatggtaatagtgtgattgggattgggccaaagttaataggcccaaaagaagtggaa  2703300                     <---------WOX13(1)                    <------------CBF                   --------->ATHB12                                                           <------                  <---------YAB1       *TSS                                                   -------                <----------DOF2   <----------DOF2                                             -------                ------>ZmHOX2a(1) <---------DAG2               --------->ANAC46               <------ --->GT1    ------->TEIL   --------->CCA1(2)                  <---------LBD16   <-----------GT1 -->GT1  --------->ICU4 <---------TOE2(3)------>ZmHOX2a(1)    --------->LBD16 <-----------GT1 <------   aattagaagtaatgaatcctttgattgagatagaagctttatcctcttcttcgtcttcatcatccgcgcatcaccagttttttctctctctctacaaatc  2703400         <----------DOF2--------->ZAT2     ------->GAMYB      <---------At4g35610                                                     <----   --------->RAP2.6(3)  --------->At4g35610                                                     -----  --------->MYB52(1)    <---------ZAT2                                                        <------ ---ARR14(2)          <---------WRKY38(1)                                                  --------->ZAT18 -->ARR14(2)        <-----------HVH21                                                      --------->PCF2 -->ARR11(3)       --------->YAB1          <---------ARR14(2)                   ------>ZmHOX2a(1)   < -----ARR10   <---------YAB1               --------->ARR14(2)                  --------->TOE2(3)<---- ---ARR11(3)--------->YAB1         <----------DOF2                     ---------->ID1      <---------ZAT18   ttcttaacggcctttcatcaatggtcagcagacttagctttcgaatataggctaagaacgagcatgtcttcttgtcttcttcctcagttcaagtgcccac  2703500    <----------DOF2 -----At4g35610                               <---------YAB1 ------>RAV1(2)             <----------DOF2 <---------ZAT6 ---ALFIN1             ------->TEIL    <-------GAMYB ---------GLK1(2)     --------->ARR14(2)<---------MYB52(1)    ------>ZmHOX2a(1) -----ZAT2    <-----------GT1      <---------ZAT18<-----------GT1   ctgattctttctctattcacttccgaacctctttctgtgcccgttagtattatttccttctctccttatctatctcattcacattccctctccaattttg  2703600                           <------MYB46(1)           <---------ICU4       --------->ICU4                           <------MYB83             <---------YAB1        <---------YAB1                          --------->MYB59           --------->ICU4     <---------YAB1       ---------                 --------->ARR14(2)               --------->YAB1  <---------MYB46(3)     --------->At4g35610                 <---------ARR14(2)              <---------YAB1 <---------MYB52(1)       <---------At4g35610             <---------LBD16           <----------DOF2        <---------MYB46(3)     <----------DOF2   tattgttcatccaatttcggattttagataggtctatccatctttttttgtatgattattgtattcgttggatgtgattatttgatgctttagctgtaac  2703700                 <---------ANAC58                 <---------ANAC58        --------->TOE2(3)                                      --------->YAB1       ----------->GT1                                --------->ATHB12  >>>>>>>>>>>>>>>>>LFY  <---------MYB52(1)  <-----------GT1   <-------TEIL >At5g28300   <-----------GT1   --------->ZAT14      <---------YAB1                   ----------->GT1   ttccttccattgttaatttccttgcagtttgctctgttctcattttttacaattcatgaatggattcatatcaatttgaagaatgcagtagtaaaaatcc  2703800  Previous    Next  AGI:  At1g08530.1    Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G09995.3); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G09995.2); similar to unnamed protein product [Vitis vinifera] (GB:CAO70794.1) Range:  from: 2701229    to: 2703094    Orientation: Forward Links:  TAIR  MIPS    AGI:  At1g08540.1    Description:  SIGB (SIGMA FACTOR B); DNA binding / DNA-directed RNA polymerase/ transcription factor. similar to SIGF (RNA POLYMERASE SIGMA-70 FACTOR), DNA binding / DNA-directed RNA polymerase/ transcription factor [Arabidopsis thaliana] (TAIR:AT2G36990.1); similar to sigma factor 2 [Sinapis alba] (GB:CAB83106.1); contains InterPro domain RNA polymerase sigma-70 factor; (InterPro:IPR000943); contains InterPro domain RNA polymerase sigma-70 region 3; (InterPro:IPR007624); contains InterPro domain Winged helix repressor DNA-binding (InterPro:IPR011991); contains InterPro domain RNA polymerase sigma factor, SigB/SigC/SigD, plastid (InterPro:IPR016262); conta Range:  from: 2703339    to: 2706848    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.