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Chromosome 1
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Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<---------
ALFIN1
--------->
MYB52(1)
------>
MYB46(1)
------>
MYB83
<---------
ANAC55(2)
<---------
ZAT14
--------->
ANAC55(2)
-------->
P
--------->
ANAC58
--------->
ZAT14
--------->
ANAC46
------>
MYB83
--------->
YAB1
<---------
MYB59
<---------
YAB1
<---------
MYB111(1)
--------->
ICU4
<---------
MYB46(2)
----------->
GT1
<---------
MYB52(2)
<----------
ID1
--------->
ANAC55(2)
--------->
ANAC55(2)
<-----
---------->
DOF2
<---------
ANAC55(2)
--------->
ANAC46
------
--->
CCA1(2)
--------->
YAB1
--------->
ANAC58
------>
MYB46(1)
--------->
ARR11(3)
>
GT1
--------->
DAG2
------->
TEIL
<---------
YAB1
<-----------
GT1
<---------
At4g35610
<---------
ARR11(3)
tgatgcaaaagtgacaaaatttcgatgaatcatgtgatgataatacgaaatgatatacctaacctacactgctcattctacatttgaagaatatatacct
8295300
--------->
ANAC55(2)
<---------
ANAC55(2)
--------->
AHL20(2)
<-----------
GT1
<---------
ICU4
--------->
ICU4
--------->
LBD16
--------->
ANAC58
--------->
HSFB2a(2)
--------->
ANAC58
--------------->
AGL15
--------->
ANAC46
<---------------
AGL15
<---------
YAB1
----------------->
AGL1
<-----------
GT1
<-----------------
AGL2
--------->
ICU4
----------------->
AG
--------->
ANAC58
----------------->
AGL2
--------->
ANAC55(1)
-------
<-----------------
AGL1
--------->
ANAC58
--------
<-------
TEIL
<---------
HSFB2a(2)
<-------
TEIL
--------->
ANAC46
----------->
RAV1(1)
<-------
----
MYB59
<---------
LBD16
<-----------
GT1
<---------
ANAC55(2)
<---------
--->
TOE2(3)
--------->
GLK1(2)
--------->
AHL20(2)
--------->
ANAC55(2)
----------->
GT1
aaatatacataccaattctgggataattacataatatacagtttcatattagtctcacgtaattacgattcacgacagtaagaagattagtttaaacggt
8295400
--------->
ANAC58
--------->
ANAC58
--------->
HSFC1(2)
<---------
HSFC1(2)
--------->
HSFB2a(1)
<---------
HSFB2a(1)
<---------
ARR11(1)
--------->
AHL20(2)
--------->
ARR14(2)
--------->
TOE2(3)
------->
TEIL
----------->
RAV1(1)
<---------
ANAC55(2)
<-----------
ARR10
--------->
AHL20(2)
--------->
ANAC58
<---------
ARR14(2)
---->
GT1
--------->
AHL20(1)
--------->
ANAC58
<---------
CCA1(2)
->
ANAC46
<---------
AHL20(1)
<---------
ICU4
<---------
ARR14(1)
--------
AtSPL8
<---------
YAB1
--------->
ANAC46
<----------
DOF2
--------->
ANAC46
--
GT1
<---------
CCA1(2)
<---------
AHL20(2)
--------------------->
WRI1
acaaaacaattcatatattacgaaaacattaaatatcacacgaagagaagaaatatgcaaaacgtctttgctcgaatcttcgacgaagcaacatagtttt
8295500
<---------
YAB1
<---------
AHL20(1)
--------->
TOE2(3)
--------->
ANAC55(2)
<-----------
GT1
<---------
ANAC55(2)
<---------
ZAT6
<-----------
GT1
<---------
ANAC58
<----------
TaMYB80
--------->
AHL20(2)
<----------
DOF2
<---------
ANAC46
----------->
GT1
<-----------
GT1
----------->
HVH21
--------->
At5g28300
<---------
ANAC58
<---------
ANAC46
<----------
DOF2
---------->
ID1
----------->
GT1
tcatttgagtgtaacattatttttcgtaaattcccatttcacccttttattacatgacatttgtctttcactgagacagtaaaaactcaagtctaatttg
8295600
<------
ZmHOX2a(2)
------->
GAMYB
--------->
MYB46(3)
<---------
TOE2(3)
<<<<<<<<<
GATA-3
<<<<<<<<<
GATA-2
<---------
AHL20(2)
<---------
MYB52(2)
--------->
AHL20(2)
*
TSS
--------->
MYB52(1)
----------->
TBP
<<<<<<<<<
GATA-4
<---------
AHL20(2)
<<<<<<<<<
GATA-1
--------->
ZAT14
<-------
TEIL
<-----------
GT1
--------->
WOX13(1)
<---------
ZAT14
<
<---------
ARR14(2)
----------->
TBP
------------>
CBF
------->
GAMYB
--------->
ANAC58
--------->
ARR14(2)
<-----------
GT1
<-----------
HVH21
--------->
MYB52(1)
--------->
ANAC58
gacatttgcatatacatactcatttttttctctatatatatagaccatgt
caatccactaacgatccctaaccgaaaacagagtagtcaagaaacagagt
8295700
------>
ZmHOX2a(2)
==============================
HOX2a_HOX2a
===============================
HOX2a_HOX2a
<------
ZmHOX2a(2)
--------->
HSFB2a(1)
--------->
GLK1(1)
<---------
ARR11(1)
<---------
ARR11(3)
--------->
ARR14(2)
--------->
KAN4(2)
<----------
TaMYB80
<---------
KAN4(1)
------>
ZmHOX2a(2)
--------->
KAN4(1)
<----------
DOF2
<-------
TEIL
<---------
HSFB2a(1)
--------->
GLK1(2)
<------
ZmHOX2a(2)
--------->
LBD16
<---------
ARR14(2)
------->
TEIL
<---------
LBD16
--------->
ARR11(3)
<---------
ARR14(2)
--------->
At4g35610
<-----------
ARR10
--------->
ARR14(2)
<---------
At4g35610
<---------
CCA1(2)
<---------
AtLEC2
<---------
GLK1(2)
<---------
ARR14(1)
------>
ZmHOX2a(1)
<---------
REM1(2)
------>
NtERF2
---------->
TaMYB80
<---------
GLK1(2)
<-----------
GT1
--------->
LBD16
--------->
HSFB2a(1)
--------->
ARR14(2)
---------
AHL20(2)
<---------
AHL20(2)
<---------
LBD16
<---------
KAN4(2)
<---------
ARR14(2)
attttttctac
atggatccatttttaattcagtccccattctccggcttctcaccggaatattctatcggatcttctccagattctttctcatcctcttc
8295800
--------->
TOE2(3)
------->
GAMYB
--------->
MYB46(3)
<---------
MYB52(2)
----------->
RAV1(1)
--------->
AtLEC2
--------->
ANAC58
--------->
ANAC46
--------->
ANAC55(1)
--------->
ANAC58
<---------
LBD16
<---------
WRKY12
<------
ZmHOX2a(1)
<---------
ZAT18
<--
--------->
At4g35610
<---------
WRKY38(1)
---
<---------
ICU4
<-----------
RAV1(2)
--------->
ZAT14
<------
ttctaacaattactctcttcccttcaacgagaacgactcagaggaaatgtttctctacggtctaatcgagcagtccacgcaacaaacctatattgactcg
8295900
----
---------
<---------
ANAC46
------>
NtERF2
<---------
LBD16
--------->
ATERF1(1)
<------
NtERF2
<---------
DEAR3(1)
---------->
DOF2
<---------
ARR14(2)
--------->
LBD16
<----------
TaMYB80
<---------
ANAC55(2)
<---------
HSFB2a(1)
<---------
ARR14(2)
--------->
GLK1(1)
------>
MYB83
--------->
ANAC55(2)
------>
NtERF2
--------->
ARR14(2)
--------->
ARR11(3)
--------->
ANAC58
--------->
RAP2.6(3)
<---------
RAP2.6(2)
<---------
ARR11(3)
--------->
At4g35610
--------->
ATERF1(1)
<---------
RAP2.3(2)
--------->
ARR14(3)
<---------
At4g35610
<---------
ATERF1(1)
<---------
LBD16
<---------
ARR14(3)
<---------
MYB52(1)
--------->
SPL7
<---------
GLK1(1)
-------
ARR14(2)
--------->
ARR14(2)
<---------
ANAC58
----------->
ARR10
------>
ARR14(2)
<------
ZmHOX2a(2)
--------->
ANAC58
<---------
ANAC46
----------->
GT1
<------
NtERF2
---
LBD16
------>
MYB46(1)
--------->
SPL7
--------->
ZAT14
<---------
ANAC58
--------->
ALFIN1
<---------
DEAR3(1)
gatagtcaagaccttccgatcaaatccgtaagctcaagaaagtcagagaagtcttacagaggcgtaagacgacggccatgggggaaattcgcggcggaga
8296000
<----------
DOF2
<------
NtERF2
---------->
DOF2
--------->
ANAC58
<------
ZmHOX2a(2)
--------->
ANAC58
--------->
SPL7
<---------
SPL7
<---------
RAP2.3(1)
--------->
HSFC1(2)
------>
NtERF2
=========================
<---------
HSFC1(2)
<---------
RAP2.3(3)
--------->
HSFB2a(1)
<---------
DEAR3(1)
<-------
TEIL
<---------
HSFB2a(1)
<---------
RAP2.3(2)
<----------
DOF2
<
--------->
CCA1(2)
--------->
ALFIN1
<---------
LBD16
--------->
TOE1(2)
--------->
HSFB2a(2)
--------->
ARR11(1)
<---------
TOE1(3)
--------->
ZAT18
--------->
TOE2(2)
<---------
HSFB2a(2)
----->
CCA1(2)
<---------
TOE2(3)
---------->
DOF2
<---------
RAP2.6(2)
<---------
At4g35610
<
>
LBD16
--------->
MYB52(1)
--------->
SPL7
--------->
ATERF1(1)
<---------
ZAT2
-
taagagattcgactagaaacggtattagggtttggctcgggacgttcgaaagcgcggaagaggcggctttagcctacgatcaagctgctttctcgatgag
8296100
<---------
MYB46(3)
<--------
P
<-------
GAMYB
--------->
GLK1(2)
<---------
MYB46(3)
<---------
ARR14(2)
<------
MYB46(1)
<----
<---------
GLK1(2)
<------
ZmHOX2a(1)
<-----
--------->
ARR14(2)
<---------
TOE2(1)
<-----
<------
NtERF2
<---------
TOE1(1)
<---------
MYB46(3)
<---------
DEAR3(1)
<------
NtERF2
------>
MYB83
--------->
ALFIN1
------>
ZmHOX2a(1)
<---------
ANAC46
------>
MYB46(1)
<-------
GAMYB
==========
HOX2a_HOX2a
<---------
DEAR3(1)
<---------
AHL20(2)
<------
MYB83
<---------
MYB52(1)
---------
ARR14(2)
<---------
LBD16
--------->
AHL20(2)
<---------
AtMYB61
<-----
---------
PCF2
<---------
At4g35610
<---------
ANAC46
--------->
TOE1(2)
--------->
LBD16
-------->
ARR14(2)
<---------
DEAR3(1)
<----------
DOF2
--------->
TOE2(2)
<---------
LBD16
agggtcctcggcgattctcaatttttcggcggagagagttcaagagtcgctttcggagattaaatatacctacgaggatggttgttctccggttgtggcg
8296200
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AGI:
At3g23240.1
Description:
ATERF1/ERF1 (ETHYLENE RESPONSE FACTOR 1); DNA binding / transcription activator/ transcription factor. Identical to Ethylene-responsive transcription factor 1B (ERF1B) [Arabidopsis Thaliana] (GB:Q8LDC8;GB:Q9ZNR2); similar to ethylene-responsive factor, putative [Arabidopsis thaliana] (TAIR:AT1G06160.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71373.1); contains InterPro domain DNA-binding, integrase-type; (InterPro:IPR016177); contains InterPro domain Pathogenesis-related transcriptional factor and ERF, DNA-binding; (InterPro:IPR001471)
Range:
from: 8295651
to: 8296611
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.