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Chromosome 1
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Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<----------
DOF2
---------->
DOF2
------>
ZmHOX2a(2)
<---------
ANAC58
<---------------
AGL15
<---------
ARR11(3)
<---------
ANAC58
--------------->
AGL15
<-------
GAMYB
<---------
ANAC58
<---------
ANAC46
----------------->
AGL1
--------->
At4g35610
<---------
WOX13(1)
<----------
DOF2
<---------
At4g35610
-------->
ATHB12
<---------
ATHB12
<-----------------
AGL1
<---------
ZAT14
<---------
ANAC58
---->
ATHB12
--------->
ANAC58
<---------
DAG2
--------->
ZAT14
<---------
ANAC46
->
ANAC58
--------->
ANAC58
<-----------
GT1
<---------
WRKY12
--------->
ETT(2)
->
ANAC58
---------->
DOF2
--------->
AHL20(2)
<---------
WRKY38(1)
--------->
ARR11(3)
attgattggcttgtaaagcactccaaatcatcgaattaa
actttaccccaaaaggagagaagtcaactctctgcagttgtcgatctttcttgtgtttttg
26969200
<---------
MYB46(3)
<---------
YAB1
<---------
YAB1
--------->
ICU4
--------->
YAB1
<---------
YAB1
<---------
ARR11(3)
--------->
ICU4
<---------
ARR14(2)
--------->
YAB1
<----------
DOF2
--------->
ARR14(2)
--------->
ICU4
<---------
DAG2
----------->
GT1
<------
<---------
YAB1
<----------
DOF2
------>
ZmHOX2a(1)
<---------
GLK1(2)
gtcatttgatgatgatgatggtgattgtggaagaagacacagcttttttcttttatcctgtgaaaaacaagatttgtctatgttctctgtctgattcttt
26969300
<-----------
RAV1(1)
<---
<---------
ARR14(2)
<-----
<---------
ANAC58
<------
MYB46(1)
--------->
ARR11(3)
<---------
ANAC46
<------
MYB83
<---------
ARR11(3)
--
<---------
ANAC58
<---------
WOX13(1)
--------->
YAB1
<---------
LBD16
<----------
DOF2
--------->
ZAT14
--------->
ATHB12
--------->
ICU4
<---------
LBD16
----
DOF2
<---------
At4g35610
<---------
YAB1
---------->
DOF2
<------
ZmHOX2a(2)
<-
atctgtctttcttctgcgtatgtggctgtgttctctgtatattagatttgattggtgttccctcttcttaaagccatgatgagatcacttccttcggggt
26969400
<-----
<-----
--------->
YAB1
------
--------->
ANAC55(2)
-------
<---------
ANAC46
<----------
DOF2
<------
<----------
DOF2
<---------
ANAC58
<---------
ANAC58
---------
<---------
DAG2
<---------
ANAC58
<---------
ANAC46
--------->
MYB52(1)
------
WRKY12
<---------
AtLEC2
<-----------
RAV1(1)
-----------------
------
HVH21
<-----------
GT1
----------->
RAV1(1)
---------->
ID1
-----------------
------->
At4g35610
--------->
ATHB12
<----------
ID1
<---------
ANAC58
------>
NtERF2
--------
At4g35610
<-------
TEIL
---------->
DOF2
--------->
ARR11(3)
--------->
ICU4
<----------
ID1
cagctttttcaattttacgagttcattgcatgttttg
aaagaacaacaaaatatgttgcgtttttcgtaattttgaaaaacttgaggccaaaaacggata
26969500
<---
----------->
RAV1(1)
<------
<----------
ID1
-------
--------->
ANAC46
<---------
MYB46(3)
--------->
ANAC58
--------->
ALFIN1
--------->
ANAC58
---------->
ID1
<---------
DEAR3(1)
----
RVE1(1)
<---------
ARR11(3)
<---------
AtMYB61
----
CCA1(1)
<---------
GLK1(2)
<<<<<<<<<<<<<<<<<
LFY
<------
--->
GLK1(1)
--------->
ARR11(3)
----------->
RAV1(1)
---------
-->
ARR14(2)
--------->
AHL20(2)
<----------
DOF2
--------->
ANAC46
<---------
DEAR3(1)
---
ARR14(2)
----------->
GT1
<-----------
GT1
------>
ZmHOX2a(1)
--------->
HSFB2a(1)
-->
GT1
------------------------>
ANAC81
------>
ZmHOX2a(1)
<---------
HSFB2a(1)
>
AGL2
--------->
DAG2
---------->
DOF2
<---------
ARR14(2)
--------->
HSFC1(2)
>
AGL1
---------->
DOF2
--------->
AHL20(2)
*
TSS
--------->
ARR14(2)
<---------
HSFC1(2)
<--
ttttcgaaaaaagcaacaagataaaataaaagatttttccttttactctc
acttgcactatcctcctcttcgcaaca
atggatgcttcggtggtgagatt
26969600
<------
NtERF2
--------->
LBD16
--------->
ANAC58
------>
NtERF2
-------
--------->
DEAR3(1)
<------
--------->
ATERF1(2)
--------->
ARR11(1)
-------
<---------
ATERF1(2)
<---------
ARR11(3)
--------->
LBD16
<---------
LBD16
--------->
ARR11(3)
------->
GAMYB
------->
GAMYB
<-----------
GT1
--------->
MYB46(3)
--------->
MYB46(3)
--------->
LBD16
--------->
ALFIN1
<------
--------
GT1
<---------
LBD16
<---------
ARR14(2)
<---------
At4g35610
------>
MYB46(1)
---
ARR11(3)
<------
NtERF2
<---------------
AGL15
--------->
At4g35610
-------->
P
-->
ARR11(3)
--------->
MYB52(1)
--------->
CCA1(2)
--------->
ATERF1(1)
------>
MYB83
---
---
GLK1(2)
------>
NtERF2
--------------->
AGL15
<---------
At4g35610
===================
-->
ARR10
--------->
ANAC58
<---------
GLK1(2)
--------->
MYB52(1)
<---------
ZAT14
<---------
MYB55(2)
---------
GT1
<---------
ALFIN1
--------->
ARR14(2)
<---------
ATERF1(1)
------>
ZmHOX2a(2)
ttcccaatcgccggcaagagtgccaccggaatttgaaccagatatggagaagattaaacggaggctgctcaagtacggtgttgatccaacccccaaaatc
26969700
--------->
RAP2.3(1)
<---------
LBD16
<---------
ZAT14
--------->
ARR14(2)
<---------
AtMYB61
<------
NtERF2
---------->
DOF2
<---------
DEAR3(1)
--------->
LBD16
<------
NtERF2
<------
NtERF2
--------->
ANAC46
<---------
DEAR3(1)
<---------
ANAC46
-->
ARR11(3)
--------->
ANAC58
<---------
ANAC46
--------->
ATERF1(1)
---
ARR11(3)
------>
MYB83
<---------
TOE2(1)
<---------
DEAR3(1)
-->
ARR14(2)
--------->
TOE2(3)
--------->
ARR14(2)
<---------
ARR14(2)
---
ARR14(2)
------->
GAMYB
--------->
ANAC58
--------->
ALFIN1
<---------
ATERF1(1)
--->
ZmHOX2a(1)
---------->
DOF2
--------->
MYB52(1)
<---------
ARR14(2)
<---------
ANAC46
-------
====
HOX2a_HOX2a
--------->
ANAC46
------>
MYB46(1)
<---------
TOE1(1)
--------->
ANAC46
<----
ctgaacaatctccgaaagaaagaaattcaaaaacacaaccgtagaaccaagcgcgaaaccgagtccgaggcggaggtgtatacggaggcgcagaaacaat
26969800
<---------
DEAR3(1)
<------
NtERF2
<---------
DEAR4(2)
<---------
RAP2.3(1)
<---------
ERF1
<---------
ATERF1(1)
------>
NtERF2
<---------
ORA47(2)
<---------
ANAC46
<---------
RAP2.3(3)
<---------
RAP2.3(2)
--------->
ATERF1(2)
<---------
RAP2.6(2)
<---------
ATERF1(2)
<---------
DEAR3(1)
--------->
ALFIN1
--------->
ATERF1(1)
<---------
ABI4(1)
--------->
ALFIN1
<----
--------->
DAG2
<-----
--------->
DAG2
<------
---------->
DOF2
-------
--------->
LBD16
-------
--------->
HSFB2a(2)
<-------
<---------
HSFC1(1)
<------
MYB83
<--
<------
ZmHOX2a(1)
--------->
ANAC58
--------->
HSFC1(1)
<------
MYB46(1)
-->
WOX13(1)
--------->
ANAC58
<---------
HSFB2a(2)
<---------
MYB46(3)
-----
ATHB12
--------->
ANAC46
<---------
LBD16
--------->
ATERF1(1)
<--
caatggaggaagaagctcgttttcaaacccttagacgggaatacaagcaattcacgaggtcaatttctggaaaaaggggcggcgatgttggtttgatggt
26969900
--------->
ARR14(2)
<---------
ARR14(2)
--------->
GLK1(2)
<---------
GLK1(1)
--------->
GLK1(1)
----
P
--
GAMYB
<---------
SPL7
---
MYB46(3)
<---------
ANAC58
-->
MYB55(2)
--------->
MYB52(2)
-->
ATHB12
<---------
MYB52(1)
-
--
YAB1
--------->
ANAC58
<------
ZmHOX2a(1)
--------->
SPL7
------
----
MYB83
--------->
ANAC58
<---------
At4g35610
<---------
ANAC46
----------->
GT1
<------
----
MYB46(1)
--------->
At4g35610
<---------
ANAC58
<--------
P
---------->
DOF2
tgggaatccatgggaaggaatcgagagagtgaagctgaaggagctcgttagtggcgttcggagagaagaggttagtgctggtgaattgaagaaagagaat
26970000
>>>>>>>
ZML2
<---------
HSFB2a(2)
<---------
HSFC1(1)
--------->
HSFB2a(2)
<---------
ANAC58
<------
MYB46(1)
<---------
GLK1(1)
<---------
HSFB2a(1)
<------
ZmHOX2a(2)
--------->
ARR14(2)
<---------
ARR14(2)
<---------
ARR11(3)
<-----------
ARR10
--------->
ARR14(3)
<---------
ARR14(3)
--------->
ARR11(3)
<------
ZmHOX2a(1)
<---------
HSFC1(2)
-
--------->
HSFC1(2)
------
--------->
ARR11(3)
<------
MYB83
------>
NtERF2
-------
<---------
ARR14(2)
<---------
ANAC58
-------
--------->
DOF2
<---------
ARR11(3)
<---------
MYB46(3)
--------->
ALFIN1
------>
ZmHOX2a(2)
--->
GLK1(2)
--------->
ARR14(2)
<---------
MYB52(1)
<---------
ANAC46
========
---
GLK1(2)
----------->
ARR10
------>
ZmHOX2a(2)
--------->
DEAR3(1)
--------->
GLK1(2)
--------->
GLK1(2)
ctaaaagagttgaagaagatacttgagaaggatcttcgttgggttctagacgacgacgttgatgtggaagaatttgatttggacaaagaatttgatcctg
26970100
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AGI:
At5g67560.1
Description:
ATARLA1D (ADP-ribosylation factor-like A1D); GTP binding. similar to ATARLA1C (ADP-ribosylation factor-like A1C), GTP binding [Arabidopsis thaliana] (TAIR:AT3G49870.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN83936.1); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Small GTP-binding protein; (InterPro:IPR005225); contains InterPro domain ARF/SAR superfamily; (InterPro:IPR006689)
Range:
from: 26967535
to: 26969437
Orientation: Forward
Links:
TAIR
MIPS
AGI:
At5g67570.1
Description:
EMB1408 (EMBRYO DEFECTIVE 1408). similar to EMB2279 (EMBRYO DEFECTIVE 2279) [Arabidopsis thaliana] (TAIR:AT1G30610.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO44704.1); contains InterPro domain Pentatricopeptide repeat (InterPro:IPR002885)
Range:
from: 26969551
to: 26972073
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.