Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                  <-------TEIL<-----------GT1                                                  --------->LBD16--------->MYB59                                                 <---------HSFB2a(2)      <----------DOF2                                                 --------->HSFB2a(2)  <------NtERF2                                             --------->DEAR3(1)--------->GLK1(2)                      --------->ANAC46     ------->GAMYB       --------->CCA1(2)                      ----------->HVH21   --------->ANAC58    <---------GLK1(2)                   --------->ARR14(2)     --------->ANAC58    --------->ARR11(1)           <---------AtMYB61       ---------->DOF2<---------ETT(1)    --------->ANAC46    <---------ARR14(2)         <----------DOF2 --------CCA1(2)   <---------ARR14(2)------>ZmHOX2a(1)        --------->ARR14(2)  <--------P -AHL20(2) --------->MYB52(1) <---------ALFIN1 --------->AtLEC2--------->ARR14(1)<-----------HVH21  <   catctcttcaaaagaccggcctatccgacccctcacttcctccaacgccatccagaaaattagagattcggtcgcgatttacaggttagggctttggttt  26758400                                   <---------TOE2(2)                                   --------->LBD16                                   <---------TOE1(2)                         <------NtERF2                                                             <-                        ------>NtERF2                                                              --                        --------->LBD16                                                           ---                       --------->ETT(1)                                                      --------                       --------->LBD16                                                       --------               --------->ANAC55(2)<---------ALFIN1                                     --------->YAB1              <-------TEIL    --------->ZAT18                                         <--------------       <---------ANAC55(2)   <---------ATERF1(1)                 --------->YAB1       ---------------      <-------TEIL     <---------LBD16                        <---------ICU4         ----------------    --------->ARR14(2)<---------LBD16           <---------AHL20(2)              --------->ZAT14   <--    <---------ARR14(2)<---------ANAC46--------->ALFIN1       --------->ICU4<---------At5g28300  ----- ---------LBD16<---------ANAC55(2)<-----------RAV1(2)   ----------->GT1   <-----------GT1 --------->YAB1   tgctcggatacataaatacgtcttgccgggactgccccaggtttggctgtttaataagttgtaaaaatcacaagttttacagtttacacccataatagta  26758500   ------------>CBF  --------->YAB1 --------ICU4 ------->YAB1 ------>ICU4            --------->ANAC58 ->YAB1                 --------->ANAC58                                                          --- --->GT1--------->AHL20(2)                                                                        --- -AGL15 <---------AHL20(2)                      <-----------GT1                      <----------DOF2 >AGL15 <---------AHL20(1)         ------>ZmHOX2a(1)                                --------->TOE2(3) ->AGL2 --------->AHL20(1)         --------->LBD16 <----------DOF2        ----------->GT1         --- -------YAB1          ---------->DOF2           ---------->ID1           <---------TOE2(3)   <------- ---->YAB1         --------->At4g35610         <-----------GT1         ---------->DOF2<---------MYB52(1)   ataataacaataaattaggggagcgaaagcaaaattcctgaaatttgtttttcctttctgcccaaacaaaaaaaaaaggttttattcctttattttttcc  26758600                               --------->ANAC58                               --------->ANAC58                       <---------MYB46(3)                               <----------ID1                       <---------At4g35610           <--   <-----------HVH21        ------->GAMYB                       --------->MYB52(1)                === --->MYB46(1)              --------->MYB46(3)                --------->ANAC55(2)                  --- ----->P              <---------ANAC55(2)                    <---------ANAC55(2) <---------CCA1(2)=== --->MYB83            --------->ANAC55(2)         ---------->DOF2   --------->At4g35610 --------->YAB1 ----GT1  <----------DOF2--------->MYB52(1)------------------------>ANAC81  ------>ZmHOX2a(1) -------   aaccttgtcagactttagaacatcacataacagacgacaaaaaaaaaaaaaaaaaagaacatcacataacagctgttcctctcatctctcttataaggtc  26758700                    <---------ANAC58           <------ZmHOX2a(2)          --------->ARR14(3)          <---------ARR14(2)          --------->ARR14(2)          <---------ARR14(3)          --------->ARR11(3)          <---------ARR11(3)          --------->AGP1                                                                      ------>ZmHOX2a(2)         --------->GLK1(1)                                                                  <--------        ----------->ARR10                                                                   ---------    <---------At4g35610 <----------DOF2              <---------ICU4                      <--------P <---------At4g35610<---------ANAC58                 --------->YAB1                    --------->ATHB12 -------At4g35610   <---------ANAC46                 --------->ZAT6                   <---------YAB1 =================HOX2a_HOX2a                       <---------ATHB12                --------->YAB1 --->ZmHOX2a(1)  <---------MYB52(1)               --------->WOX13(1)                <---------ICU4 ==================HOX2a_HOX2a                  ------------>CBF                   --------->ICU4   - -->ARR11(3)------>ZmHOX2a(2)          ----------->GT1       ---------->DOF2       <---------ATHB12 -   ctctgcttctgagatcttcgttgcttctttgccttctggtttagtttaaaatcaatcactaccaaaagccctaatcacagaagaaatcatggttgatctc  26758800                                      --------->MYB59                                   --------->ARR14(2)                                          ------                                   <---------ARR14(2)                                     --------->YAB1                                --------->LBD16                                    <---------YAB1 -ARR11(3)                     --------->LBD16                                    --------->KAN4(2) >ARR11(3)              <----------DOF2                              --------->ARR11(3)  <---------YAB1 -------->ZAT14      --------->ARR11(3)        --------->ANAC58      <---------ARR11(3)--------->YAB1 --------->DOF2      <---------ARR11(3)        --------->ANAC58     <---------CCA1(2) <---------YAB1-   agtaaagacttacaatttttcaaggtctttctccctgaattcggttctcacgaactggtatacttgttttatatctcatcagtttattcttataatatca  26758900                  <---------AHL20(2)            --------->LBD16          <---------LBD16       <---------ANAC58       <---------ANAC58 <---------AHL20(1) <---------AHL20(2)               --------->ARR14(2) --------->ARR11(3)             <---------AHL20(2) <---------ARR11(3)            --------->AHL20(2)    ------>ZmHOX2a(1)                 ---------->DOF2 --------->AHL20(1)    <-----------GT1             ----------->RAV1(2)               --------->TOE2(3) --------->AHL20(2)<---------AHL20(2)    <---------At4g35610                         <---------MYB59 --->YAB1--------->AtLEC2    --------->YAB1       ------>ZmHOX2a(1)                 <---------ANAC55(2) -------->AHL20(2)--------->AHL20(2)   <-----------RAV1(2)<-------TEIL              -----------------   aaatatattccatgcggagattaatttacaaaaataaatctgcaggtgattcctcctgcattcatcgatatgttagagaaaccattacctaaagaagcgt  26759000                             --------->REM1(2)                             <---------ZAT14                             --------->ZAT14                            --------->ALFIN1                          <---------ANAC58                          <---------ANAC46                          <---------ANAC58                       <---------AtMYB61                    <---------MYB52(1)                           <---------ANAC46                    --------->ARR14(2)                       <---------GLK1(2)                    <---------ARR14(2)                       --------->ARR11(3)                   <-------GAMYB                           ----------->ARR10                  <---------MYB46(3)              <-------TEIL--------->GLK1(2)        <------MYB46(1)                 <---------DEAR3(1)              --------->CCA1(2)                     <------MYB83                <---------ORA47(1)              <---------ARR14(2)                   <--------P               ------------>AtMYB77             --------->ARR14(2)                --------->DAG2 >AG        <---------------AtSPL3              --------->ARR11(3)              ---------->DOF2   tcttagtcgatgagattggacggttatggtgtgtagagactaaaacagaagatacagaagaaagattctgtgttttcttcacaaaaggttggcaaagttt  26759100                                                      <---------ARR14(2)                                                      --------->GLK1(2)                                         <---------ZAT2                                         --------->At4g35610 --------->GLK1(2)                                         <---------At4g35610<---------GLK1(2)                                         --------->ZAT2     <---------ARR14(2)                               --------------------->WRI1   --------->ARR14(2)                   ----                               <---------ANAC58   <------NtERF2        <---------YAB1      ----------                               <---------ANAC58  ------>NtERF2      <---------MYB52(1) <---------ANAC46        --------->WOX13(1)--------->HSFC1(2)    <---------DEAR3(1) <-------GAMYB     --------->MYB52(1)      <------ZmHOX2a(2)   <---------HSFC1(2) ----------->HVH21    --------->ANAC46  ----------->HVH21   cgcaaacgatcaatctcttgaatttggagacttccttgtcttcagctacgacggcgattccagattctccgttacgattttcgctaatgacggatgtaaa  26759200                               ------>ZmHOX2a(2)                               ===========================HOX2a_HOX2a                              <------ZmHOX2a(2)                  <---------CCA1(1)           <---------ANAC46   --------->CCA1(2)                  <---------RVE1(1)           <---------ANAC58   ============================HOX2a_HOX2a           <---------ANAC58  <---------AGP1                     --------->ARR11(3)          <------NtERF2      --------->AGP1                     <---------ARR11(3)      <------MYB83           --------->ARR11(3)            --------->LBD16           --------->TOE1(2)     <---------AtMYB61       <---------ARR11(3)          <---------LBD16            ------>ZmHOX2a(2)  <-----------RAV1(1) --------->ANAC58                  --------->MYB52(1)         <------ZmHOX2a(2) --------->ARR11(3)   --------->ANAC58                 --------->ARR14(2)         --------->ARR14(2) <---------ARR11(3) ------->GAMYB                    ----------->ARR10            <---------ARR14(2) ------>DOF2       --------->MYB46(3)              <------ZmHOX2a(1)   <-----------GT1 ->GT1<------MYB46(1)<---------LBD16 <---------GLK1(1) <---------ARR14(2)     <---------LBD16     <--   aaagatgttggtgtcgtctcaaccacggatagatctagggtttctcttgatgaggaagaaccggatgatatttttactaaaccggatcgtatgagagatt  26759300  Previous    Next  AGI:  At5g66970.1    Description:  GTP binding. similar to signal recognition particle 54 kDa protein 3 / SRP54 (SRP-54C) [Arabidopsis thaliana] (TAIR:AT1G48900.2); similar to signal recognition particle 54 kDa protein 3 / SRP54 (SRP-54C) [Arabidopsis thaliana] (TAIR:AT1G48900.1); similar to Signal recognition particle 54 kDa protein 2 (SRP54) (GB:P49972); contains InterPro domain Signal recognition particle, SRP54 subunit, GTPase; (InterPro:IPR000897) Range:  from: 26757671    to: 26758351    Orientation: Reverse Links:  TAIR  MIPS    AGI:  At5g66980.1    Description:  transcriptional factor B3 family protein. similar to transcriptional factor B3 family protein [Arabidopsis thaliana] (TAIR:AT3G06160.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN76392.1); contains InterPro domain Transcriptional factor B3; (InterPro:IPR003340) Range:  from: 26758789    to: 26760052    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.