Search   Chromosome 1 Chromosome 2 Chromosome 3 Chromosome 4 Chromosome 5    Position Exon region Intron region UTR region AGI % Restriction to highly conserved TF binding sites (0-100)   Go to graphical and table display  1        10        20        30        40        50        60        70        80        90        100                                                                             <---------HSFB2a(2)         ----------->GT1                                              <----------DOF2       <-------GAMYB                                                --------->HSFC1(2)      --------->MYB111(2)                   <------MYB83            <---------HSFC1(2)      <---------MYB46(3)        >>>>>>>>>TBF1                    <------ZmHOX2a(1)      --------->MYB55(2)  >>>>>>>>>TBF1     <------MYB46(1)    <---------TOE2(3)    --------->ARR11(3)     <--------P     <------ZmHOX2a(1)   --------->ATHB12 ----------->HVH21 --------->HSFB2a(2) -------->DAG2    ------------------------>ANAC81      --------->At4g35610 --------->HSFC1(1) -------->DOF2---------->DOF2>>>>>>>>>TBF1<--------P   <---------At4g35610 <---------HSFC1(1)  ------   aaaaagggttgttgttaaaagaggagaagaagaagaagaacatggttggcattgttgagatgactgaggaagcttttctagagaaatatgttgtgagatt  25972200                                                                                 ------>ZmHOX2a(2)                                                                                --------->CCA1(2)                             <---------ANAC58                                   <------ZmHOX2a(2)                          <--------P                                           <-----------ARR10                         <-------GAMYB <---------ANAC58                        --------->AGP1                 --------->ARR14(2)    <---------ANAC58                        <---------ARR14(2)                 <---------ARR14(2)    <---------ANAC46                        --------->ARR11(3)          --------->At4g35610<---------ANAC46                         ------>ZmHOX2a(2)     <--------          <---------At4g35610<---------ANAC58              --------->ANAC58    --------->ARR14(2) <---------At4g35610    <---------MYB46(3)                 --------->ANAC58    <---------AGP1  <----- --->CCA1(2)    <------ZmHOX2a(1)     <-------TEIL         --------->ANAC46    <---------ARR11(3)   tggagatgagattgctgaggaactgctggttgcttacaagtgcgtgtgtttagtcgatgaaacgctacttgatcgtatcaagatctaattgtagatttca  25972300                                                                <---------YAB1                                                               <---------AHL20(2)                                               <---------ARR14(2)                                  <-                                               --------->ARR14(2)                                  <-                                             --------->LBD16  --------->YAB1                     <---                                            <---------ANAC55(2)--------->AHL20(2)             <------ -GLK1(1)                                   --------->ANAC46 <---------YAB1                 <-------- ------GT1         <---------YAB1           --------->ANAC55(2)<---------AHL20(1)      <-----------GT1   caagtccaaacttgaaattttgtcattgtatccaaacttcgctcatccgtaactgtgttgaacattataatttggaagtaactcttaaatcaccctttat  25972400                       -------->HAHB4                       <---------ICU4                       --------->YAB1                      <---------YAB1                      <---------ATHB51                      --------->ICU4                     <---------AHL20(2) --------ANAC58     --------->YAB1 --------ANAC58    <---------AHL20(2) --------GT1      --------->AHL20(2)           <----------DOF2                         ---------->DOF2 ---ICU4 <---------HSFC1(2)                 --------->GLK1(2)                    <---------GLK1(2) --DOF2  --------->HSFC1(2)    <-------TEIL<---------GLK1(2)<---------At4g35610<---------YAB1   tacgagcttgaagcttctcatataataatgggattcatatgaagcgattctttttctatttcagcacttgagcaaaaactcaagattgtcaaagcgtctt  25972500                                                                                                   --                                                                                                  ---                                                                                       <---------TOE2(2)                                               --------->MYB52(1)                      <---------TOE1(3)                                              <-----------GT1            --------->LBD16         <---                                           --------->YAB1               <---------ANAC46         ----                                      <-------GAMYB                     <---------HSFB2a(2)      ----                                     <---------MYB46(3)         <------------CBF---------->DOF2<-----                  <-----------GT1    --------->MYB52(2) <-----------GT1<---------LBD16 <---------TOE2(3)              ------->TEIL          <-------TEIL  ----------->GT1<---------WOX13(1)    <---------TOE1(2)   aaaaatttgactcatgaatttaaccggtttgattttggttcgttgtaataaccggtttaaaccagagattgattccggataaaaaagcttaggtttttcc  25972600       <---------ALFIN1       *TSS     ------>NtERF2     <---------RAP2.6(3)    ----------->HVH21    <---------ETT(1)    --------->RAP2.6(2)    >>>>>>>>>>DREB1A    >>>>>>>>>>DREB2A----------->GT1    --------->DEAR3(1)                                                         <---------ZAT2   --------->DEAR3(2)                                                          --------->ZAT2 -------  --------->At4g35610                                                          --------->At4g35610  <---------At4g35610        --------->TOE1(2)                                 <---------At4g35610 -------->DOF2     <------MYB46(1)                                            --------->ARR14(2) ------>ANAC46     <------MYB83           <------NtERF2                       --------->GLK1(2)<----- ------HSFB2a(2) --------->ALFIN1        --------->LBD16          <----------ID1       <---------GLK1(1) ----->LBD16  <---------TOE2(3)        <---------LBD16            ----------->HVH21    --------->GLK1(1) ----->HSFB2a(2) <--------P  --------->TOE1(3)                 <------ZmHOX2a(1)  --------->At4g35610 ----LBD16    --------->MYB59--------->TOE2(3)               --------->ALFIN1 <---------ARR14(2)   --   gcgaagccgacactgtaaggtagggctaaaaccttagaatagccggagagaagaaggcgagaagaggagcgacaagggcgaagctgcagaattcttcggt  25972700                              ------>NtERF2                             <---------RAP2.6(2)                             <---------DEAR3(1)                            <---------LBD16                            <---------At4g35610                            --------->At4g35610                            --------->ATERF1(1)                            <------NtERF2                           <---------ERF1                           <---------RAP2.3(1)                           <---------ATERF1(1)                          <---------DEAR3(1)                         <-------GAMYB                         ----------->RAV1(2)                         --------->ATERF1(1)                         <---------ZAT2                         --------->ZAT2                         <------NtERF2                         --------->At4g35610                        <---------RRTF1(1)                       <---------RRTF1(3)                       <---------ANAC58                       --------->ATERF1(2)                                  --------->GLK1(1)                       <---------RAP2.3(3)                                  <---------GLK1(1)                       <---------ANAC46                                    <---------ARR11(3)                       <---------RAP2.6(2)                                 <---------ARR14(2)                       <---------DEAR3(1)                                  --------->ARR14(2)                       <---------DREB2C(2)                             <---------LBD16                       <---------ATERF1(2)                         <---------ARR14(2)                       <---------RRTF1(2)                          --------->ARR14(2)                       <---------RAP2.3(2)                      <-----------------AGL1        <-------TEIL  --------->RAP2.6(3)                     <---------ALFIN1       --------->ARR14(1)<---------At4g35610                 --------->MYB46(3)       --------->GLK1(2)<---------ATERF1(1)               --------->ATERF1(1)------>ZmHOX2a(2)   <---      <---------GLK1(2)<---------ANAC58                  <---------ATERF1(1)<------ZmHOX2a(2)    ----      --------->ARR14(2)------>NtERF2                   <---------ARR14(2) --------->ARR11(3)<-------      <---------ARR14(2)<---------RAP2.3(1)            ============================HOX2a_HOX2a   <---      --------->ARR11(1)<---------ERF1                 =============================HOX2a_HOX2a  ---- ---->GT1  <-------GAMYB<---------MYB46(3)<-------GAMYB<------ZmHOX2a(1)   --------->ARR14(3)<------- ----MYB52(1)     <---------ICU4         ----------->GT1--------->ARR14(2) <---------ARR14(3)<------- ------->ICU4     --------->YAB1 <----------DOF2       xxxxxxxxxxxxxxxx>smallRNA(i) <---------ZAT6   aattttcagattcggttgaataatggcggctgcggcttttgggcagttaaatctagaggagcctccaccgatttggggatctcgtagtgtcgattgcttc  25972800                             <---------ANAC46                                      --------->AHL20(2) --------->GLK1(2)           <---------ANAC58                                      <---------AHL20(2) ------HSFB2a(2)             <---------ANAC58                                     --------->AHL20(2) ----->HSFC1(1)             <---------LBD16                                       <---------AHL20(2) --ANAC58      <------MYB46(1)--------->LBD16                                     --------->AHL20(1)- ------HSFC1(1)<------MYB83--------->MYB52(1)                         <---------ANAC58        <------ ----->HSFB2a(2) <---------REM1(1)                                    <---------ANAC58  <------MYB46(1) --ANAC46    <---------WOX13(1)                          <---------LBD16          <---------AHL20(1)< --ANAC58   <---------GLK1(2)<---------ANAC55(1)<----------DOF2       <---------ANAC46  <------MYB83<   gagaagcttgaacagattggtgaaggaacttacgggtattcttctccattctttttttttctgggttttgttccttgattccaatttatttggttttgtc  25972900                                                                                               ------                                                                                      >>>>>>>>>ARR2 -------->ZAT14                                                                      --------->ATHB12 -----HVH21                                           --------->O2                  <---------YAB1 -- ---------ZAT14           <---------------AGL15     <---------ALFIN1              --------->YAB1----- ---------ZAT18           ===========================================================================   agagtactcgtgctcaagactgaaatttctcaaatttgaacgatttcgctagggccacttgatatataagtttttttgaaacaattttgattgtgaaacg  25973000                    --------->ARR11(3)                    <---------ARR11(3)                          <---------AHL20(2)                ----------------->AGL3                          <---------AHL20(1)                =====================================================================================         --------->ATHB12                                       --------->AHL20(1)           --------        <---------YAB1      --------->ATHB12  <----------DOF2   --------->AHL20(2)           -------- ----->GT1      ===========================HOX2a_HOX2a         <---------ATHB12              <------- ------->AHL20(2)  <---------CCA1(2)<------ZmHOX2a(1)          --------->AHL20(2)<---------WOX13(1) ---->TOE2(3)   ------>ZmHOX2a(2) <---------TOE2(3)    <---------CCA1(2)       --------->ATHB12 =================================MADS_MADS<-----------GT1--------->TOE2(3)   <---------YAB1 <-------   tttatatatagttattgatccatatattgttgatttgaggaattttaactttgcctcttatctcaataaattcgattttgttgattgaatttgggaattc  25973100  Previous    Next  AGI:  At5g64950.1    Description:  mitochondrial transcription termination factor-related / mTERF-related. similar to mitochondrial transcription termination factor family protein / mTERF family protein [Arabidopsis thaliana] (TAIR:AT5G07900.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO71777.1); contains InterPro domain Mitochodrial transcription termination factor-related (InterPro:IPR003690) Range:  from: 25971070    to: 25972386    Orientation: Forward Links:  TAIR  MIPS    AGI:  At5g64960.1    Description:  CDKC;2 (CYCLIN-DEPENDENT KINASE C;2); kinase. Identical to Cyclin-dependent kinase C-2 (CDKC-2) [Arabidopsis Thaliana] (GB:Q8W4P1;GB:Q9LV82); similar to CDKC,1 (CYCLIN-DEPENDENT KINASE C,1), kinase [Arabidopsis thaliana] (TAIR:AT5G10270.1); similar to 80A08_23 [Brassica rapa subsp. pekinensis] (GB:AAZ67608.1); similar to 80C09_20 [Brassica rapa subsp. pekinensis] (GB:AAZ41831.1); similar to cdc2MsC [Medicago sativa] (GB:CAA65979.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase, core; (InterPro:IPR000719); contains InterPro domain Protein kinase-like (InterPro:IPR01100 Range:  from: 25972607    to: 25976221    Orientation: Forward Links:  TAIR  MIPS      Please cite the corresponding publications when using AthaMap.