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Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
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                                                                                              <-----
                                                                                             ------>ZmHOX2a(2)
                                                                                            <------ZmHOX2a(2)
                                                                                           ---------
                   <---------ALFIN1                                                        ---------
               --------->At4g35610                                                         <--------
        ---------->DOF2                    --------->YAB1                                  <--------
     --------->ANAC58                      <--------HAHB4   --------->YAB1                <------ZmHOX2a(1)
     --------->ANAC58         --------->WOX13(1)      ------>ZmHOX2a(1)                 <---------TOE2(3)
--->At5g28300 <XXXXXXXXXXXXXXXXXXXMIR773B*<---------YAB1 --------->YAB1            <----------DOF2
 
gaatgctctcgcaaagtttgctccacttgttgccaatctcttcttatcattaagttcctataatcaaaatttcaaaaaatccaaaactttttaggatctt  25646300
                                                                          <------NtERF2
                                                                         ----------->RAV1(1)
                                                                         --------->ANAC58
                                                                         ------>NtERF2
                                                                         --------->ANAC58
                                                                      ------>NtERF2
                                                                     --------->ANAC58
                                                                     <---------bZIP60(1)
                                                                     --------->ANAC46             <-
                                                                     --------->TGA2(1)            --
       <---------YAB1                                             ----------->TGA1                --
       --------->ICU4                             --------->HSFB2a(2)--------->bZIP60(1)         ---
-----DOF2                            <------MYB83 <---------HSFB2a(2)--------->ANAC58          <----
>ARR14(2)                            <---------MYB46(3)           ----------->HVH21            -----
>ARR11(3)                            <------MYB46(1)           <<<<<<<<<WRKY18        --------->At4g35610
-ARR14(2)                        <-----------RAV1(1)         --------->TOE2(3)  --------->At4g35610
-ARR11(3)    <---------TOE2(3) <----------DOF2  ------>ZmHOX2a(1) <---------ATHB12 --------->At4g35610
 
tagcaatgtcaagattgaggcattcaaagacttactttgttggttttgctcctctcgaggtattcgtcaatgacgccagcattagcagaagcagaaacag  25646400
             <---------ZAT14
   --------->ZAT14
  --------->ALFIN1
--------At4g35610                                       --------->WOX13(1)
------->ZAT2--------->ALFIN1                           <-------TEIL               --------->WRKY38(1)
------->At4g35610  --------->At4g35610                <------ZmHOX2a(2)   --------->MYB46(3)       -
-------->RAV1(1)<---------ZAT2                       --------->AGP1      ------>MYB46(1)         ---
-----At4g35610  --------->At4g35610              <---------MYB52(1)      ------>MYB83  <----------DOF2
---->At4g35610  <---------At4g35610     ------>ZmHOX2a(2)        <---------ICU4  <----------CDC5 ---
 
cagcagtggagaagagtgtagctgctaagaaaaccatggctgatcgtcttccattagatccatcaacatcatcaccaacaacgcgttgagctttgatcac  25646500
                                                                                               <----
                             --------->MYB52(1)                                                -----
                             ------>MYB83                                                      -----
                             ------>MYB46(1)                                                   <----
                           <---------MYB59           <----------DOF2                          <-----
                          --------->ANAC46         ------>MYB83                               ------
                          --------->ANAC58         ------>MYB46(1)                         <--------
                          --------->ANAC58      --------->MYB46(3)                         <--------
                        ------>MYB46(1)       ------>MYB46(1)                              ---------
                        ------>MYB83          ------>MYB83                                 <--------
     --------->YAB1   --------->AtMYB61     --------->AtMYB61                              <--------
 --------->ICU4       <---------MYB59       --------->MYB46(3)                      <------NtERF2
-------->YAB1     ----------->HVH21         <---------MYB46(2)                     --------->ANAC58
------>ANAC58   --------->At4g35610        --------->ANAC46                        --------->ANAC58
------>ANAC58   <---------At4g35610      <-----------GT1                  <xxxxxxxxxxxxxxxxsmallRNA(s)
 
aggcataatcatctgtttcttctgaccaaacccaactgatgaattcaccaaaccaactttctggttaagctctaccgagccagagccagcaattgcgtag  25646600
                                    <---------ARR11(3)
                                    --------->ARR11(3)
                                 <---------TOE2(3)
                                ---------->DOF2
                           <------NtERF2
                          ------>NtERF2
-----At4g35610            <---------RAP2.6(3)
---->At4g35610            <------NtERF2
---->ZAT2                --------->ANAC46
-----ZAT2                --------->DEAR3(1)
----ARR14(2)             --------->ANAC58
--->ARR14(2)             <---------ATERF1(2)                                                  ------
-ANAC58                  --------->RAP2.6(2)                                           <------MYB46(1)
-ANAC58 <---------ZAT14  --------->ATERF1(2)                                           <------MYB83
>ANAC55(2)        <-------TEIL --------->AHL20(2)                                    <---------WOX13(1)
-ANAC46 --------->ZAT14  --------->ANAC58<----------DOF2                           --------->ATHB12-
-ANAC55(2) <<<<<<<<<TAC1<---------RAP2.6(2)    <----------DOF2                    <---------YAB1   -
 
ctgcaagtgagaacactcgagttcatggccgccattaaagatgtctttttcttttgttcttgaaaaattcaagagttttttgagtttgattggtgagtga  25646700
                                                  <---------O2
                                                  =====================================MYC_MYB
                                                  <---------ANAC46
                                                  <---------ANAC58
                                                  <---------TGA1a
                                                  <---------ANAC58
                                                  <---------bZIP60(2)
                                                  --------->O2
                                                 ----------->STF1
                                                 ----------->bZIP911(1)               --------->ALFIN1
                                             <---------ICU4                         <---------ANAC58
                                             --------->YAB1                         <---------ANAC46
                                            --------->ICU4                          <---------ANAC58
                                            <---------YAB1                        <------MYB46(1)
                                          *TSS  <---------TGA2(2)               <--------P
                                          --------->YAB1                       <-------GAMYB
                                         <---------YAB1                       --------->MYB55(2)
            --------->ARR11(3)           --------->ICU4                       <---------MYB46(3)
            <---------ARR11(3)         --------->YAB1         ----------->GT1<---------TOE2(3)
--->ZAT18 ----------->ARR10         <------ZmHOX2a(1)--------->ZAT18         <---------YAB1        -
-------->ANAC58                   <---------TOE2(3)  --------->WRKY38(1) <------------CBF     ------
-------->ANAC58    <---------ZAT6--------->YAB1----------->TGA1    --------->ICU4 <------MYB83<-----
 
gcaaggaagagattagattttagtattagagatgaatgaggatgatgatgatgacgtggactaagatgtaataagggattgtggttggagtgtggataag  25646800
         --------->ZAT14
  --------->GLK1(1)
  <---------GLK1(1)     ---------->DOF2                            <---------TOE1(3) --------->GLK1(2)
---------->ARR10 <------------CBF        <---------YAB1            <---------TOE2(3)--------->ARR14(2)
--->DAG2<-----------HVH21           <----------DOF2           <----------DOF2       <---------GLK1(2)
----TOE2(3)     ------>ZmHOX2a(1)  <---------DAG2 ---------->DOF2 ---------->DOF2   <---------ARR14(2)
 
gtgagatttcccttcagtcctattggcaaaagtccaaaccttttcttattactcaaagcttcaagcttttaaagtttgagtttttcagattctctcttcc  25646900
                                  --------->ANAC46
                                  --------->ANAC58
                                  --------->ANAC58
                                --------->AtMYB61
                                <---------ALFIN1
                                ----------->RAV1(1)                   <------MYB83
                               --------->ANAC46                       <------MYB46(1)
                               --------->MYB46(3)                    <---------MYB46(3)
                              ------>NtERF2                          --------->MYB111(1)
                     <---------ZAT14                                 --------->MYB46(2)
                     --------->ZAT14                                 --------->MYB59            ----
                <-------TEIL <---------ALFIN1                --------->RVE1(1)                  ----
            ----------->ARR10--------->ANAC46               <---------ARR11(3)                ------
         <-------GAMYB      --------->MYB46(3)              --------->ARR11(3)                <-----
        <---------MYB46(3)--------->PCF2                    --------->GLK1(2)               --------
        ----------->GT1   <---------ZAT18         --------->YAB1   <---------MYB52(1)       <-------
 
aagtgtttatgtggttagattcacttcagtccccaccacacaaactctctcaaaaatcacaaaaatctctgtttggtactctgttttcttagtctgatcc  25647000
                             --------->ARR11(3)
                             <---------ARR11(3)
                      --------->At4g35610
                      <---------ANAC55(2)
                      ----------->GT1
                     --------->MYB59
         <----------DOF2   --------->ICU4                                                          -
 <-----------GT1    <-----------RAV1(2)                                                           <-
------->GT1       <-----------HVH21                                                             ----
----->LBD16      --------->LBD16                                                               <----
>ZmHOX2a(2)     --------->LBD16 <---------LBD16                                                -----
----LBD16<---------DAG2  ---------->DOF2<---------YAB1                           ---------->DOF2<---
->ARR14(2)     <---------LBD16<---------GLK1(1)                             <----------ID1   <------
--ARR14(2)    <-----------------AGL1  <---------ICU4   ---------->DOF2   ---------->DOF2  <---------
 
ggtttaactgaactttatcccggtcaggtaaagatttcggattatgactctaatttggcaaagcctatgtttcatagaaagaacaaaagagagcttttac  25647100
              ------>ZmHOX2a(1)
           <---------YAB1    ----------->GT1
     <---------ARR11(3)      <---------ZAT6
-------->YAB1--------->TOE2(3)
--------YAB1 --------->TOE1(3)
----------->AGL15          <-------TEIL
-----YAB1 <-----------GT1  <---------ZAT14
------------>AGL3      <---------------AtSPL8
------------AGL15     ---------->DOF2
-----GT1<---------AHL20(2) --------->ZAT14----------->GT1        --------->MYB52(1)
-DOF2--------->ARR11(3)<---------------AtSPL3   --------->AHL20(2)      ---------->DOF2 <---------TOE2(3)
 
cattataagattttatccttagagagaaagtacagttaaacaaataagaaaaaaaatgaccaaaaaaaaaacagacaaagaagaaaatgttaagaaaaca  25647200
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AGI:  At5g64040.1   
Description:  PSAN (photosystem I reaction center subunit PSI-N); calmodulin binding. Identical to Photosystem I reaction center subunit N, chloroplast precursor (PSAN) [Arabidopsis Thaliana] (GB:P49107); similar to unknown [Populus trichocarpa x Populus deltoides] (GB:ABK96256.1); contains InterPro domain Photosystem I reaction centre subunit N; (InterPro:IPR008796)
Range:  from: 25645814    to: 25646743    Orientation: Reverse
Links:  TAIR  MIPS 
 
AGI:  At5g64050.1   
Description:  ATERS/ERS/OVA3 (OVULE ABORTION 3); glutamate-tRNA ligase. Identical to Glutamyl-tRNA synthetase [Arabidopsis Thaliana] (GB:Q9FEA2;GB:Q940P6); similar to glutamate-tRNA ligase, putative / glutamyl-tRNA synthetase, putatuve / GluRS, putative [Arabidopsis thaliana] (TAIR:AT5G26710.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN72214.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO47549.1); similar to glutamyl-tRNA synthetase [Nicotiana benthamiana] (GB:AAY18610.1); contains InterPro domain Aminoacyl-tRNA synthetase, class I, conserved site; (InterPro:IPR001412); contains InterPro domain Glutamyl/glutaminyl-tRNA synth
Range:  from: 25647081    to: 25650435    Orientation: Reverse
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.