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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<------
ZmHOX2a(1)
----------->
GT1
<-----------
RAV1(2)
<---------
YAB1
--------->
CCA1(2)
<---------
ARR14(2)
--------->
ARR11(1)
<-----------
GT1
------->
MYB52(1)
--------->
ARR11(3)
--------->
LBD16
---->
TOE1(3)
<---------
ARR11(3)
--------->
HSFB2a(2)
---->
YAB1
--------->
ARR14(2)
<---------
HSFB2a(2)
<---------
GLK1(1)
---->
TOE2(3)
--------->
ANAC58
--------->
YAB1
<---------
LBD16
--------->
HSFB2a(2)
----
GT1
--------->
ANAC58
------->
TEIL
--------->
GLK1(2)
<---------
HSFB2a(2)
ataactgatcatcttaaactagcaattcaagatatgaatcaggagaaaatgaccaaaattctgggaaaattttcatcttctctagaattcagaaaatgaa
25124800
--------->
ATHB51
<---------
YAB1
<---------
ICU4
--------->
YAB1
<--------
HAHB4
<------
ZmHOX2a(2)
<---------
YAB1
<---------
ARR11(3)
--------->
ARR11(3)
<------
ZmHOX2a(1)
------>
ZmHOX2a(2)
<------
ZmHOX2a(2)
--------->
ARR14(2)
<---------
ARR11(3)
--------->
ARR11(3)
<---------
ARR14(2)
--------->
AGP1
<---------
ARR11(1)
<-----------
ARR10
<---------
AGP1
<---------
ARR14(1)
<-
<---------
CCA1(2)
<----
--------->
LBD16
========
<---------
YAB1
--------->
ARR14(2)
<---------
ICU4
<---------
HSFB2a(2)
<------
ZmHOX2a(1)
--------->
TOE2(3)
<---------
LBD16
--------->
ICU4
--------->
HSFB2a(2)
--------->
GLK1(1)
--------->
YAB1
<---------
ARR14(2)
--------->
ATHB12
----------->
RAV1(2)
<---------
GLK1(1)
--------->
GLK1(2)
<---------
ANAC46
--------->
YAB1
--------->
YAB1
--------->
At4g35610
==
caaattctagcatcatcaatgtctcgttgaatccggatctaggatcattattgaatcaatagtac
cttctgggcatagaagaagcagagaaatcaggaac
25124900
<---------
TOE1(2)
<---------
ANAC58
--------->
TOE2(3)
<---------
ANAC58
<---------
GLK1(1)
<---------
ANAC46
==============
HOX2a_HOX2a
<---------
ANAC58
------>
ZmHOX2a(2)
--------->
GLK1(1)
<---------
ANAC58
==========================
HOX2a_HOX2a
<---------
HSFC1(2)
<------
ZmHOX2a(2)
<---------
ZAT2
--------->
HSFC1(2)
===============
HOX2a_HOX2a
<---------
HSFB2a(1)
<---------
ARR14(2)
--------->
ZAT2
--------->
ATERF1(1)
--------->
ARR14(2)
--------->
At4g35610
--------->
HSFB2a(1)
<---------
RAP2.6(3)
<---------
At4g35610
-----
ZmHOX2a(1)
<---------
AGP1
------>
ZmHOX2a(2)
--------->
ANAC55(2)
-------
RAV1(2)
<---------
CCA1(2)
<---------
ARR14(2)
<---------
ANAC55(2)
=========================
HOX2a_HOX2a
--------->
ARR14(2)
<-----------
GT1
--------->
YAB1
=========================
HOX2a_HOX2a
<------
ZmHOX2a(1)
<---------
AHL20(2)
<-----------
GT1
<----
aggaggcttcccttccttggatctaagagccgatctgagaggatacctcagcttcgagtttattgaattac
ctgttcagaaattttcgaatcagaaaaac
25125000
--------->
ANAC58
<---------
At4g35610
--------->
At4g35610
<---------
ZAT2
--------->
ZAT2
----------->
RAV1(1)
--------->
At4g35610
--------->
HSFB2a(2)
<-----------
GT1
<---------
HSFB2a(2)
<----------
DOF2
--------------->
AGL15
<---------
DAG2
<-----------
GT1
--------->
ANAC58
--------->
CCA1(2)
--------->
ARR11(3)
----------->
HVH21
<---------
YAB1
--------->
ICU4
<---------
ARR11(3)
--------->
At4g35610
--
<---------
ANAC55(2)
<---------
ZAT6
<---------
ARR14(2)
<---------
At4g35610
<---------
GLK1(1)
-----
ICU4
----------->
GT1
--------->
ARR14(2)
--------->
ZAT2
--------->
ATHB12
attacgaaaactgaaatgggaagtgataatcagatagaaggaattgaagaagatttac
cagaagcagcagagctcacgcttttctccattgatttctcca
25125100
*
TSS
------>
ZmHOX2a(2)
<------
ZmHOX2a(2)
<---------
ARR14(2)
--------->
ARR11(3)
--------->
ARR14(3)
------
<---------
AGP1
<-----
<---------
DAG2
<-----------
ARR10
-----------
<----------
DOF2
--------->
ARR14(2)
<---------
At4g35610
------->
TEIL
<---------
TOE2(3)
<---------
ARR14(3)
--------->
At4g35610
------->
YAB1
<-----------
GT1
----------->
GT1
<---------
ARR11(3)
<-----------
HVH21
t
tgatgaacttagaaacttttaacgcttttttgttttgtttagactgagagagaaaaaaaactgaagatctcaattt
gaaaaactgtgagagcggagaaa
25125200
--------->
YAB1
<-----------
GT1
--------->
ICU4
<---------
YAB1
--------->
YAB1
<---------
YAB1
<---------
ANAC46
----------->
HVH21
--------->
GLK1(2)
--->
GLK1(1)
--------->
YAB1
--------->
TOE2(3)
<---------
ICU4
----
GLK1(1)
<---------
ICU4
----------->
HVH21
<---------
YAB1
>
GT1
--------->
YAB1
------------>
CBF
--------->
ARR11(3)
--------->
REM1(1)
--------->
ICU4
tctctgacttataataataacaaaacaatctgatttgtttctaagaactcgtggatgacccctacattatttgatatttctcttatagcctcattatttt
25125300
--------->
At5g28300
--------->
YAB1
<---------
ATHB12
<---------------
AGL15
--------------->
AGL15
----------------->
AGL3
<---------------
AGL15
--------------->
AGL15
----------------->
AGL1
----------------->
AGL2
<-----------------
AGL2
----------------->
AG
--------->
MYB46(3)
<-----------------
AGL1
<-------
<-----------------
AGL1
--------
<-----------------
AG
<--------
----------->
HVH21
--------->
ANAC46
---------->
DOF2
---------
<---------
ICU4
--------->
ZAT6
----------->
GT1
--------->
ICU4
---------
<-----------
GT1
<-----------
GT1
----------->
GT1
--------->
ATHB12
--------->
ATHB12
<--------
ctattaaaccaattctgacccattttttactctacccaataagggtaaatttgatgcttcatttgaaattgaattgattaaaagtttaaacaaatttatt
25125400
<---------
AHL20(2)
--------->
AHL20(1)
<---------
AHL20(1)
<---------
AHL20(2)
--------->
AHL20(2)
--------->
AHL20(1)
--
AHL20(2)
<---------
AHL20(1)
->
AHL20(2)
<-------
TEIL
-
AHL20(1)
<---------
ARR11(3)
----------->
GT1
>
AHL20(1)
--------->
AHL20(1)
<---------
TOE2(3)
<---------
ANAC58
----
>
AHL20(2)
--------->
ARR11(3)
---------->
DOF2
<---------
ANAC58
-----
-
AHL20(2)
<---------
AHL20(1)
--------->
CCA1(2)
--------->
TOE2(3)
<----
tgagtttatatatatttgaaaatattcatatatattagtttgggaacagagataaaggttttagtatgtaaaaacattagcttgggattaaaaatgaaga
25125500
<---------
MYB59
--------->
TOE1(3)
--------->
ANAC55(2)
----------->
GT1
---------->
DOF2
<---------
ANAC55(2)
<---------
TOE2(3)
--------->
GLK1(2)
---------->
DOF2
--------->
KAN4(2)
<---------
ANAC58
----->
GLK1(1)
<---------
KAN4(1)
<-------
GAMYB
<<<<<<<<<<
E2Fb
---->
ARR11(3)
<---------
DAG2
--------->
LBD16
<-----------
RAV1(1)
----------->
GT1
<--------
-----
ARR11(3)
<----------
DOF2
--------->
TOE2(3)
<---------
ANAC58
<---------
MYB46(3)
tttctaaagttaaagggtctactttttgaataatccgtaaaacctaaatttctgttgcagtttgccttgagagcgggaaattggttgaaagtctctttgg
25125600
--------->
ATHB12
<---------
WOX13(1)
<---------
ARR14(2)
--------->
ARR14(2)
<---------
PCF2
<---------
SPL7
<---------
PCF5
---------
<-----------
HVH21
<---------
At4g35610
<----------
<---------
RAP2.6(3)
--------->
At4g35610
<---------
MYB52(1)
--------->
DEAR3(1)
--------->
GLK1(2)
<-------
GAMYB
--------->
ATERF1(1)
<---------
GLK1(2)
--------->
ANAC58
<-----
--------->
CCA1(2)
--------->
DEAR3(2)
<------
ZmHOX2a(1)
--------->
ANAC58
<-----
--
DOF2
----------->
GT1
--------->
SPL7
<---------
TOE2(3)
<-----------
GT1
--------->
WRKY38(1)
gagaagatagagagagagagagttactctgagccgtccgattcgattgatttaggaatctgagggacctcatttttccaaacgctccgttgtctgtgggg
25125700
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AGI:
At5g62550.1
Description:
similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G28770.1); similar to unknown [Populus trichocarpa] (GB:ABK92769.1)
Range:
from: 25122802
to: 25125177
Orientation: Reverse
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.