Search
 
   Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
 
Go to graphical and table display 

1        10        20        30        40        50        60        70        80        90        100 
                                      <------ZmHOX2a(1)
                                     ----------->GT1
                                   <-----------RAV1(2)
                              <---------YAB1
                            --------->CCA1(2)
                           <---------ARR14(2)
                           --------->ARR11(1)                      <-----------GT1
------->MYB52(1)           --------->ARR11(3)             --------->LBD16
---->TOE1(3)               <---------ARR11(3)            --------->HSFB2a(2)
---->YAB1                  --------->ARR14(2)            <---------HSFB2a(2)      <---------GLK1(1)
---->TOE2(3)    --------->ANAC58   --------->YAB1       <---------LBD16       --------->HSFB2a(2)
----GT1         --------->ANAC58 ------->TEIL         --------->GLK1(2)       <---------HSFB2a(2)
 
ataactgatcatcttaaactagcaattcaagatatgaatcaggagaaaatgaccaaaattctgggaaaattttcatcttctctagaattcagaaaatgaa  25124800
                                            --------->ATHB51
                                           <---------YAB1
                                         <---------ICU4
                                         --------->YAB1
                                         <--------HAHB4
                                        <------ZmHOX2a(2)
                                        <---------YAB1
                                       <---------ARR11(3)
                                       --------->ARR11(3)
                                      <------ZmHOX2a(1)
                                  ------>ZmHOX2a(2)
                                 <------ZmHOX2a(2)
                                --------->ARR14(2)
                                <---------ARR11(3)
                                --------->ARR11(3)
                                <---------ARR14(2)
                                --------->AGP1
                                <---------ARR11(1)
                                <-----------ARR10
                                <---------AGP1
                               <---------ARR14(1)                                                 <-
                               <---------CCA1(2)                                               <----
                              --------->LBD16                                               ========
           <---------YAB1 --------->ARR14(2)<---------ICU4       <---------HSFB2a(2)        <------ZmHOX2a(1)
          --------->TOE2(3) <---------LBD16--------->ICU4        --------->HSFB2a(2)  --------->GLK1(1)
      --------->YAB1      <---------ARR14(2)--------->ATHB12   ----------->RAV1(2)    <---------GLK1(1)
--------->GLK1(2)   <---------ANAC46  --------->YAB1    --------->YAB1         --------->At4g35610==
 
caaattctagcatcatcaatgtctcgttgaatccggatctaggatcattattgaatcaatagtaccttctgggcatagaagaagcagagaaatcaggaac  25124900
             <---------TOE1(2)
           <---------ANAC58               --------->TOE2(3)
           <---------ANAC58            <---------GLK1(1)
           <---------ANAC46   ==============HOX2a_HOX2a
  <---------ANAC58------>ZmHOX2a(2)    --------->GLK1(1)
  <---------ANAC58==========================HOX2a_HOX2a
 <---------HSFC1(2)          <------ZmHOX2a(2)<---------ZAT2
 --------->HSFC1(2)          ===============HOX2a_HOX2a
 <---------HSFB2a(1)        <---------ARR14(2)--------->ZAT2
 --------->ATERF1(1)        --------->ARR14(2)--------->At4g35610
 --------->HSFB2a(1)       <---------RAP2.6(3)<---------At4g35610
-----ZmHOX2a(1) <---------AGP1------>ZmHOX2a(2)                   --------->ANAC55(2)
-------RAV1(2) <---------CCA1(2)      <---------ARR14(2)          <---------ANAC55(2)
=========================HOX2a_HOX2a  --------->ARR14(2)        <-----------GT1        --------->YAB1
=========================HOX2a_HOX2a <------ZmHOX2a(1)      <---------AHL20(2)  <-----------GT1<----
 
aggaggcttcccttccttggatctaagagccgatctgagaggatacctcagcttcgagtttattgaattacctgttcagaaattttcgaatcagaaaaac  25125000
                                                                        --------->ANAC58
                                                              <---------At4g35610
                                                              --------->At4g35610
                                                              <---------ZAT2
                                                              --------->ZAT2
                                                             ----------->RAV1(1)
                                                           --------->At4g35610
                                                      --------->HSFB2a(2)      <-----------GT1
                                                      <---------HSFB2a(2)  <----------DOF2
                                                      --------------->AGL15<---------DAG2
                                                   <-----------GT1      --------->ANAC58
                              --------->CCA1(2) --------->ARR11(3)   ----------->HVH21
<---------YAB1        --------->ICU4            <---------ARR11(3) --------->At4g35610            --
<---------ANAC55(2)<---------ZAT6               <---------ARR14(2) <---------At4g35610  <---------GLK1(1)
-----ICU4        ----------->GT1                --------->ARR14(2) --------->ZAT2     --------->ATHB12
 
attacgaaaactgaaatgggaagtgataatcagatagaaggaattgaagaagatttaccagaagcagcagagctcacgcttttctccattgatttctcca  25125100
                                                                            *TSS
                                                                 ------>ZmHOX2a(2)
                                                                <------ZmHOX2a(2)
                                                               <---------ARR14(2)
                                                               --------->ARR11(3)
                                                               --------->ARR14(3)             ------
                                                               <---------AGP1                 <-----
                      <---------DAG2                           <-----------ARR10         -----------
                      <----------DOF2                          --------->ARR14(2)      <---------At4g35610
   ------->TEIL   <---------TOE2(3)                            <---------ARR14(3)      --------->At4g35610
------->YAB1     <-----------GT1               ----------->GT1 <---------ARR11(3)<-----------HVH21
 
ttgatgaacttagaaacttttaacgcttttttgttttgtttagactgagagagaaaaaaaactgaagatctcaatttgaaaaactgtgagagcggagaaa  25125200
              --------->YAB1
              <-----------GT1
          --------->ICU4
          <---------YAB1
        --------->YAB1
       <---------YAB1
   <---------ANAC46
----------->HVH21      --------->GLK1(2)
--->GLK1(1)--------->YAB1                                    --------->TOE2(3)            <---------ICU4
----GLK1(1)<---------ICU4                          ----------->HVH21                     <---------YAB1
>GT1 --------->YAB1 ------------>CBF     --------->ARR11(3) --------->REM1(1)            --------->ICU4
 
tctctgacttataataataacaaaacaatctgatttgtttctaagaactcgtggatgacccctacattatttgatatttctcttatagcctcattatttt  25125300
                                        --------->At5g28300
                                    --------->YAB1
                                   <---------ATHB12
                                <---------------AGL15
                                --------------->AGL15
                               ----------------->AGL3
                               <---------------AGL15
                               --------------->AGL15
                               ----------------->AGL1
                               ----------------->AGL2
                               <-----------------AGL2
                               ----------------->AG
                               --------->MYB46(3)
                               <-----------------AGL1                                       <-------
                              <-----------------AGL1                                        --------
                              <-----------------AG                                         <--------
           ----------->HVH21  --------->ANAC46                              ---------->DOF2---------
         <---------ICU4  --------->ZAT6----------->GT1                --------->ICU4       ---------
  <-----------GT1      <-----------GT1----------->GT1  --------->ATHB12--------->ATHB12    <--------
 
ctattaaaccaattctgacccattttttactctacccaataagggtaaatttgatgcttcatttgaaattgaattgattaaaagtttaaacaaatttatt  25125400
        <---------AHL20(2)
       --------->AHL20(1)
       <---------AHL20(1)
      <---------AHL20(2)
  --------->AHL20(2)       --------->AHL20(1)
--AHL20(2)                 <---------AHL20(1)
->AHL20(2)           <-------TEIL
-AHL20(1)        <---------ARR11(3)                           ----------->GT1
>AHL20(1)        --------->AHL20(1)                <---------TOE2(3)        <---------ANAC58    ----
>AHL20(2)        --------->ARR11(3)              ---------->DOF2            <---------ANAC58   -----
-AHL20(2)        <---------AHL20(1)             --------->CCA1(2)      --------->TOE2(3)       <----
 
tgagtttatatatatttgaaaatattcatatatattagtttgggaacagagataaaggttttagtatgtaaaaacattagcttgggattaaaaatgaaga  25125500
                                       <---------MYB59
                                       --------->TOE1(3)
                               --------->ANAC55(2)
                               ----------->GT1
       ---------->DOF2         <---------ANAC55(2)
  <---------TOE2(3)         --------->GLK1(2)
 ---------->DOF2           --------->KAN4(2)                 <---------ANAC58
----->GLK1(1)             <---------KAN4(1)      <-------GAMYB         <<<<<<<<<<E2Fb
---->ARR11(3)     <---------DAG2--------->LBD16 <-----------RAV1(1)   ----------->GT1      <--------
-----ARR11(3)     <----------DOF2      --------->TOE2(3)     <---------ANAC58 <---------MYB46(3)
 
tttctaaagttaaagggtctactttttgaataatccgtaaaacctaaatttctgttgcagtttgccttgagagcgggaaattggttgaaagtctctttgg  25125600
                                           --------->ATHB12
                                         <---------WOX13(1)
                                   <---------ARR14(2)
                                   --------->ARR14(2)       <---------PCF2
                              <---------SPL7                <---------PCF5                 ---------
                              <-----------HVH21      <---------At4g35610                 <----------
                              <---------RAP2.6(3)    --------->At4g35610            <---------MYB52(1)
                             --------->DEAR3(1)     --------->GLK1(2)              <-------GAMYB
                            --------->ATERF1(1)    <---------GLK1(2)         --------->ANAC58 <-----
   --------->CCA1(2)        --------->DEAR3(2)    <------ZmHOX2a(1)          --------->ANAC58 <-----
--DOF2          ----------->GT1 --------->SPL7  <---------TOE2(3)     <-----------GT1--------->WRKY38(1)
 
gagaagatagagagagagagagttactctgagccgtccgattcgattgatttaggaatctgagggacctcatttttccaaacgctccgttgtctgtgggg  25125700
<- Previous    Next ->

AGI:  At5g62550.1   
Description:  similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G28770.1); similar to unknown [Populus trichocarpa] (GB:ABK92769.1)
Range:  from: 25122802    to: 25125177    Orientation: Reverse
Links:  TAIR  MIPS 
 
 
Please cite the corresponding publications when using AthaMap.