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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
----------->
GT1
---------->
DOF2
<---------
AHL20(2)
<-------
TEIL
<-------
TEIL
--------->
GLK1(2)
--------->
CCA1(2)
<-----------
GT1
<---------
GLK1(2)
<---------
ARR11(3)
---
--------->
AHL20(2)
--------->
ARR14(2)
---------->
DOF2
---
<---------
AHL20(2)
<---------
ARR14(2)
--------->
AHL20(2)
-----
>
DOF2
--------------->
AtSPL8
--------->
ATHB12
--------->
AHL20(2)
--------->
DAG2
--------->
YAB1
tatataatttctgttccacatacacagactcatcagtggattctgggtttaaattgtaacaaataaaaagtcaagatacaaaaggaagtgagcataacta
25029100
<---------
AHL20(2)
--------->
AHL20(2)
<---------
AHL20(2)
--------->
ICU4
<---------
TOE2(3)
---------->
DOF2
<-
--------->
YAB1
--------->
AHL20(2)
<-
------>
ANAC58
<---------
ARR11(3)
---
------>
ANAC58
----------->
GT1
--------->
AHL20(2)
--------->
TOE2(3)
<------
----->
DOF2
--------->
DAG2
--------->
AHL20(2)
----------->
GT1
--------
aagcaaaacaactataaggtgatatttaaaataaataaagaaatataggggttaaaacataaatacaaactcttcgctaattctcaaaacccttcccttt
25029200
<---------
YAB1
--------->
ANAC58
<------
MYB83
--------->
ANAC58
<---------
HSFB2a(1)
<------
MYB46(1)
<---------
ALFIN1
<---------
At4g35610
<---------
ARR14(2)
<---------
ANAC58
--------->
AHL20(2)
<---------
ZAT2
<---------
At4g35610
--------
DAG2
--------->
ARR14(2)
<---------
ANAC58
<---------
MYB52(1)
--------->
ZAT2
--------->
At4g35610
---------
DOF2
<---------
AtMYB61
<---------
REM1(2)
--------->
HSFB2a(1)
<-------
------>
TOE2(3)
<------------
AtMYB77
--------->
YAB1
--------->
ANAC46
--------->
HSFC1(2)
<-------
----
DOF2
--------->
YAB1
<---------
MYB52(1)
<-----------
HVH21
<---------
HSFC1(2)
<-------
------------->
WRI1
<-------
GAMYB
----------------------->
TaNAC69(2)
--------->
At4g35610
--------
cctttatcgcagtcgtaactggcctccgttggtctctatcgtgactcccttcacgccattaattccgattaatcggagcttcgacttctcatcttccttg
25029300
------>
ZmHOX2a(2)
<------
ZmHOX2a(2)
--------->
ARR11(3)
--------->
ARR14(3)
<---------
ARR14(3)
<---------
ARR11(3)
<---------
ARR14(2)
<---------
ARR11(3)
--------->
AGP1
<---------
CCA1(2)
--------->
ARR14(2)
<----------
DOF2
<-----------
GT1
--
ANAC58
<---------
DAG2
--------->
YAB1
----------->
GT1
<---------
--
ANAC46
--------->
TOE2(3)
<----------
DOF2
<--------
P
<---------
AGP1
--
ANAC58
--------->
TOE1(3)
<---------
DAG2
<------------
CBF
<-----------
ARR10
------------->
WRI1
--------->
ANAC55(2)
--------->
ATHB12
<---------
CCA1(2)
ggtaactcgctctaccttatcttcatgtaatcaaaattcgaactttttgtctgtgtgttttagttgtttattgggtaagttactagatcttctctttcga
25029400
========================
HOX2a_HOX2a
<------
ZmHOX2a(2)
--------->
ARR11(3)
-
<---------
TOE1(2)
<---------
ARR11(3)
--
--------->
TOE1(2)
--------->
TOE2(3)
-------
<---------
ANAC58
<-----------
GT1
<-----------
GT1
-------
<---------
ANAC58
<<<<<<<<<
EIN3
<------
ZmHOX2a(1)
<--------
<-------
TEIL
--------->
GLK1(2)
--------->
TOE1(3)
<---------
TOE1(2)
-
DOF2
<---------
At4g35610
--------->
ATHB12
------------>
CBF
<---------
TOE1(2)
------>
ZmHOX2a(1)
ttttgtttcagcgttcgtgcgattcaacgtttgatttgaagaatcagtagca
atgtataaccttagtaggatcatttatcgtttctcctcggtttcactt
25029500
------
------>
ZmHOX2a(2)
<------
ZmHOX2a(2)
<--------
<--------
--------->
At4g35610
---------
--------->
ANAC58
<-----------
GT1
---------
-------->
TOE1(3)
<---------
ARR11(3)
<--------
------->
ZAT6
----------->
RAV1(2)
--------->
ARR11(3)
---------
-->
ANAC46
<---------
ARR14(2)
--------->
GLK1(2)
<--------
-->
ANAC55(2)
--------->
GLK1(2)
--------->
REM1(1)
--------->
At4g35610
<------
ZmHOX2a(1)
---
GT1
--------->
ANAC58
xxxxxxxxxxxxxxxxxxx>
smallRNA(fl3)
------->
TEIL
--------->
YAB1
aaccctagcacgagagcatctgggtttctacttgagaacgcttcatcaaaaatcttacaatctgctacgaatcgagcattttctgcaaaatcaggatctg
25029600
--------->
At4g35610
------>
ZmHOX2a(2)
--------->
GLK1(1)
<------
ZmHOX2a(2)
<---------
AGP1
<---------
WOX13(1)
<---------
ARR11(3)
<---------
ARR14(3)
--------->
ARR14(3)
--------->
ARR14(2)
<---------
SPL7
<---------
YAB1
<---------
MYB46(3)
------>
ZmHOX2a(2)
<---------------
AtSPL8
--------->
ATHB12
<------
MYB83
<---------
GLK1(1)
<------
MYB46(1)
<---------
At4g35610
<---------
MYB46(3)
<---------
ARR14(2)
--------->
MYB55(2)
<---------
ARR11(3)
<---------
AtMYB61
--------->
ARR11(3)
--------->
ATHB12
--------->
ARR11(3)
<------
ZmHOX2a(2)
--------->
GLK1(2)
=======================
HOX2a_HOX2a
--------->
ARR11(3)
<---------
ARR14(2)
--------->
ALFIN1
<---------
ARR11(3)
<-----------
ARR10
----->
HVH21
====================================
HOX2a_HOX2a
-
ARR14(2)
===========================
HOX2a_HOX2a
-
ARR11(3)
============================
HOX2a_HOX2a
>
ARR11(3)
--------->
RAP2.6(3)
<------
ZmHOX2a(1)
<------
ZmHOX2a(1)
>
ARR14(2)
--------->
MYB52(1)
===============================
HOX2a_HOX2a
---
ARR10
--------->
YAB1
<------
ZmHOX2a(1)
<---------
GLK1(2)
>
GLK1(2)
<---------
YAB1
==============================
HOX2a_HOX2a
-
AGP1
<------
NtERF2
<-----------
RAV1(2)
==================
HOX2a_HOX2a
<-------
atggagttggaggcgatgataacggctggaatatttcaacaggaggatcatttggtggtacaggatctgctgatcttgattgggacaataaatctatgtg
25029700
------>
ZmHOX2a(1)
--------->
ARR14(2)
<---------
ARR11(1)
--------->
GLK1(2)
<---------
At4g35610
--------->
At4g35610
<-----------
HVH21
<---------
ARR14(2)
--------->
ETT(2)
<---------
ARR14(1)
<---------
MYB46(3)
--------->
At5g28300
<------
MYB83
------>
NtERF2
<-
<------
MYB46(1)
<------
NtERF2
--------->
YAB1
--
<---------
AtMYB61
--------->
LBD16
<---------
YAB1
<---------
YAB1
<---------
MYB52(1)
<---------
DEAR3(1)
------->
GAMYB
<-
----
RAV1(1)
<------
ZmHOX2a(1)
<-------
GAMYB
<---------
LBD16
<---------
At4g35610
<--------
gtctactggtttaactaaggagcatttcgatggtgtctccgttggtcgtcagaagaacgcggcgaatccttcttctgataacaccccttctgattcgggt
25029800
---------->
DOF2
<---------
ANAC58
<---------
ANAC58
<---------
ANAC58
<---------
ANAC58
--------->
ICU4
--------->
ATHB12
------
--------
bZIP60(1)
<--------
P
<---------
YAB1
------
------->
bZIP60(1)
---------->
DOF2
<---------
MYB46(3)
--------->
ICU4
<---------
YAB1
<
--------
TGA2(1)
----------------->
AGL1
<---------
TOE2(3)
--------->
YAB1
<---------
ARR11(3)
-
ANAC46
--------->
MYB59
<----------
DOF2
<---------
YAB1
--------->
ARR11(3)
gatgtaatgagcaaattgggtccaaaggaggtagctttggttaatgaaatgaatgagtatgatgatttgcttaaagagattgagcaagataataggcaag
25029900
<---------
REM1(1)
<-------
GAMYB
<-----------
RAV1(1)
<------
ZmHOX2a(2)
<---------
ARR11(3)
<---------
ZAT14
--------->
ANAC58
<-------
PIF5
<---------
ARR11(3)
------->
PIF5
--------->
YAB1
<----------
DOF2
--------->
ARR11(3)
<---------
ZAT2
<---------
CCA1(2)
--->
ANAC58
<---------
GLK1(1)
--------->
ANAC58
<---------
At4g35610
<-----
--->
ANAC58
--------->
ATHB12
--------->
ATHB12
<---------
MYB46(3)
<-----------
RAV1(2)
--------->
TOE2(3)
------
NtERF2
--------->
ICU4
--------->
ALFIN1
---------->
DOF2
<-----------
ARR10
gcagggcttttgttgatgggattaaacagagaatgatggagatcagtgtgttgttgaagcaagttaaagagccaggtgctagagggtcttatcttaagga
25030000
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AGI:
At5g62270.1
Description:
similar to mucin-related [Arabidopsis thaliana] (TAIR:AT2G02880.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO46237.1)
Range:
from: 25029453
to: 25031443
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.