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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
--------->
AHL20(2)
<---------
AHL20(2)
--------->
AHL20(2)
<---------
WOX13(1)
--------->
AHL20(2)
-
<------
ZmHOX2a(1)
----------------------
--------->
AHL20(2)
<---------
YAB1
--------->
CCA1(2)
--------->
AHL20(2)
<
----------->
GT1
<---------
TOE2(3)
--------->
AHL20(2)
----------->
GT1
<-
---------->
DOF2
<---------
YAB1
----------->
GT1
---------->
DOF2
---
--------->
CCA1(2)
<---------
TOE1(3)
--------->
YAB1
<------
ZmHOX2a(1)
<---------
AHL20(2)
----------->
GT1
--------------->
AGL15
--------->
ARR11(3)
<---------
TOE2(3)
--------->
AHL20(2)
gatgaagataaaagtaagtaaattccagttatattaagattaggattgatattgataaaaatatgggtaacttaggaaagaaaataaaaaaataaaatcg
24789200
--------->
ARR11(3)
--------->
ARR14(2)
--------->
LBD16
--------->
ARR11(3)
------
--------->
ARR14(2)
------
<---------
ARR11(3)
<---------
ARR14(2)
--------->
ARR14(2)
--------->
ARR11(3)
<------
ZmHOX2a(2)
--------->
GLK1(2)
<---------
AHL20(2)
<---------
LBD16
------->
TEIL
--------->
AHL20(2)
<---------
ARR14(2)
--------->
ANAC46
<-----------
GT1
--------->
CCA1(1)
--------->
ANAC58
-------->
ARR14(2)
<---------
GLK1(1)
--------->
ANAC58
-->
ANAC81
--------->
RVE1(1)
<---------
LBD16
--------->
MYB46(3)
<--------
---------
ARR14(2)
--------->
RVE1(1)
<---------
LBD16
--------->
RAP2.6(3)
------>
ZmHOX2a(1)
---------
TaMYB80
------>
ZmHOX2a(1)
<---------
ARR11(3)
--------->
MYB52(1)
<---------
ARR14(2)
------->
TaMYB80
====================
HOX2a_HOX2a
----------->
RAV1(2)
--------->
LBD16
aatatacgatttaatatctctcctaaatatccgggatcaatatccagtacatgtttacctggaaaacaatctaacggctgattttccacgaatcctatct
24789300
<---------
ZAT2
--------->
ZAT2
------>
ZmHOX2a(1)
<---------
bZIP60(2)
--------->
TOE2(2)
<---------
ICU4
--------->
TOE1(2)
--------->
YAB1
<---------
ARR11(3)
<---------
YAB1
<---------
YAB1
<---------
At4g35610
<---------
ANAC46
<
--------->
YAB1
--------->
At4g35610
<---------
ANAC58
<-
<------------
AtMYB77
<-----------
RAV1(1)
<---------
ANAC58
<---
--------->
MYB46(3)
<---------
GLK1(2)
------>
ZmHOX2a(1)
<---
--------->
TOE2(3)
--------->
ARR11(3)
--------->
TOE2(3)
<---------
YAB1
--->
YAB1
<---------
At5g28300
<---------
At4g35610
---------->
ID1
<---------
ANAC46
<---------
ARR11(3)
--->
TOE2(3)
------->
GAMYB
==================================
HOX2a_HOX2a
--------->
ARR11(3)
-
CCA1(2)
<-----------
GT1
------>
ZmHOX2a(2)
<-----------
GT1
----------->
GT1
--------->
AHL20(2)
-
taagaaaatgttaaccgtcgattatgatcctacgctgattctgctggatttttccttataatgacttgggtaaaaacttccaaataaaacaagataatta
24789400
--
----
----
----------->
TBP
--------->
AHL20(2)
<---------
AHL20(2)
--------->
AHL20(2)
<---------
AHL20(2)
<---------
CCA1(2)
--
<---------
ARR14(2)
------
--------->
ARR14(2)
------
<---------
GLK1(1)
<-----
<---------
CCA1(2)
--------
<----------
TaMYB80
--------
--------->
GLK1(1)
----------
<---------
AHL20(2)
---------->
TaMYB80
<---------
AHL20(2)
<-----------------
AG
--------->
ANAC58
----------->
TBP
<-----------------
AGL1
----------->
GT1
--------->
ANAC58
<---------
AHL20(2)
<----------
DOF2
--------->
AHL20(2)
--------->
ANAC46
--------->
AHL20(2)
<---------
DAG2
--------->
AHL20(2)
----------->
HVH21
----------->
TBP
---------
ARR14(2)
--------->
AHL20(2)
--------->
At4g35610
----------->
TBP
<-
-----
ZmHOX2a(1)
<------
ZmHOX2a(1)
--------->
ZAT2
<-----------
TBP
<---
------
TOE1(3)
<---------
TOE2(3)
--------->
MYB52(1)
--------->
LBD16
<-------
------
TOE2(3)
<---------
TOE1(3)
<-----------
GT1
<---------
LBD16
--------->
AHL20(2)
-------->
ARR14(2)
----------->
GT1
<------
ZmHOX2a(1)
<---------
At4g35610
--------->
AHL20(2)
aggaaacgctttatctcttaaggaaaataaaaaaatgtaaaaacaccaaggacattcacaaataacagctcacgcatatccgcatatatatatatatata
24789500
<---------
AHL20(2)
----------->
TBP
--------->
AHL20(2)
--------->
AHL20(2)
----------->
TBP
<---------
AHL20(2)
----------->
TBP
<---------
AHL20(2)
--------->
AHL20(2)
------->
AHL20(2)
------->
TBP
<---------
YAB1
----->
AHL20(2)
------>
ZmHOX2a(2)
--------->
TBP
<------
ZmHOX2a(2)
----->
TBP
<---------
ARR14(2)
<-----
--->
AHL20(2)
--------->
ARR11(3)
<-----
----
AHL20(2)
--------->
ARR14(3)
<-----
--->
TBP
--------->
AGP1
<---------
ANAC58
<------
NtERF2
->
AHL20(2)
<---------
ICU4
------------>
CBF
<---------
YAB1
<--------
->
TBP
--------->
YAB1
----------->
TBP
<---------
ARR11(3)
<---------
MYB46(3)
--------
AHL20(2)
----------->
GT1
--------->
ARR14(2)
<------------
CBF
------
AHL20(2)
<---------
TOE1(3)
<---------
ARR14(3)
<---------
YAB1
<---------
AtMYB61
--
AHL20(2)
<---------
YAB1
<---------
TOE2(3)
----------->
ARR10
<---------
ANAC58
--------->
ATHB12
tatatatatatatatcattacacaagagagtttaaggtataaatacaattagcgagatcttgtgattctaattcttgtgataccgaaaacattggtggcg
24789600
------->
MYC2
<-------
MYC3
<---------
ANAC46
<------
NtERF2
------>
NtERF2
<---------
DEAR3(1)
<---------
DEAR3(1)
------->
GAMYB
<---------
DREB2C(2)
<---------
SPL7
<---------
ANAC46
--------->
ANAC58
-----
<---------
REM1(1)
--------->
ALFIN1
<-----------
RAV1(1)
--------->
ANAC58
------->
GAMYB
----
ANAC58
----------->
HVH21
<---------
ALFIN1
---------->
DOF2
--------->
MYB52(1)
----
ANAC58
----------->
TGA1
<-------
MYC2
<---------
ICU4
--------->
ANAC58
<----
----
ANAC46
<---------
DEAR3(1)
------->
MYC3
--------->
ICU4
--------->
MYB52(1)
<---------
ANAC46
-
DEAR3(1)
<------
ZmHOX2a(1)
<---------
ARR14(2)
<---------
ATHB51
--------->
ANAC58
----------->
GT1
agagagag
atggtgaaggagacggtgacggtggcgaaaacgtgctcacactgtggccataatggccataacgcacggacttgtctcaacggcgttaataa
24789700
<------
NtERF2
----------->
RAV1(2)
------>
NtERF2
<------
NtERF2
<----------
DOF2
<---------
ATERF1(1)
------>
ZmHOX2a(2)
<---------
DOF5.7(2)
<-----------------
AGL1
<---------
ANAC46
<---------
ARR14(2)
--------->
MYB52(1)
<---------
AHL20(1)
--------->
RAP2.6(2)
<------
ZmHOX2a(1)
<-----------
GT1
--------->
ARR11(3)
--------->
DEAR3(1)
<---------
TOE2(3)
<---------
ZAT6
<---------
AHL20(2)
<---------
RAP2.6(2)
<---------
TOE1(3)
----------->
GT1
--------->
AHL20(1)
--------->
MYB59
------->
GAMYB
---->
DAG2
<---------
DEAR3(1)
--------->
ARR14(2)
----------->
HVH21
--------->
TOE2(3)
-----
TOE2(3)
--------->
SPL7
----------->
RAV1(2)
<---------
TOE2(3)
--------->
GLK1(1)
ggcaagtgttaaactgttcggcgttaatatatcgtctgatccgattaggccgcctgaggtaacggcgttaaggaagagtcttagtttgggaaaccttgat
24789800
<---------
MYB52(1)
<-------
GAMYB
--------->
DEAR3(1)
<------
NtERF2
------>
NtERF2
--------->
RAP2.3(2)
--------->
RRTF1(3)
--------->
ANAC46
--------->
RAP2.3(3)
--------->
DEAR3(1)
<---------
DEAR3(1)
--------->
RAP2.3(1)
<-----------
--------->
ATERF1(1)
------------
------->
GAMYB
--------->
DEAR4(2)
<------------
--------->
MYB52(1)
--------->
ERF1
-------------
<---------
MYB52(2)
--------->
ORA47(2)
-------------
---------->
DOF2
<---------
RAP2.3(1)
<-------
TEIL
<---------
YAB1
------>
ZmHOX2a(1)
<---------
ICU4
<---------
GLK1(2)
<---------
TOE2(3)
------>
ZmHOX2a(2)
--------->
MYB52(1)
<---------
MYB46(3)
-----
<---------
DOF5.7(2)
--------->
At5g28300
<---------
YAB1
<---------
MYB52(1)
------
--------->
MYB52(1)
<---------
ANAC46
--------->
ABI4(1)
<---------
YAB1
--------->
At4g35610
gctcttctcgctaacgatgaaagtaacggtagcggtgatcctatcgccgccgttgatgataccggttatcattccgatggtcagattcattccaagaagg
24789900
--------->
ANAC55(1)
--------->
ANAC58
--------->
ANAC58
<---------
ANAC55(2)
--------->
YAB1
----
AGL15
--------->
ANAC55(2)
--------->
AHL20(2)
--->
AGL15
--------->
SPL7
<---------
AHL20(2)
-
-----
AGL1
<-------
TEIL
--------->
AHL20(2)
-
---->
AG
<---------------
AtSPL8
--------->
YAB1
--------->
WOX13(1)
---->
AGL1
<---------------
AtSPL3
<---------
ATHB12
<---------
AHL20(2)
------>
GT1
--------->
DAG2
--------->
TOE2(3)
--------->
YAB1
<-----
----->
GT1
---------->
DOF2
--------->
GLK1(2)
--------->
AHL20(2)
<------
gtaaaactgctcatgagaagaaaaagg
gtacgtaatcttctaatctcatcaatttgataatctaaattcaatgaaattaataagaataaatcaaattcag
24790000
---
---
<-------
--------
--------->
REM1(2)
<---------
ANAC58
--------->
ANAC58
--------->
ANAC55(2)
-------->
ANAC58
<---------
ANAC46
-------->
ANAC58
----------->
GT1
--------->
DAG2
<---------
ANAC55(2)
----
LBD16
>>>>>>>>>
TBF1
----------->
GT1
---------->
DOF2
<---------
ANAC58
---
LBD16
--------->
ANAC58
--------->
TOE2(3)
<---------
LBD16
<---------
ANAC55(1)
ggaagccatggacggaagaagaacatcgtaatttcttaatcggtttaaacaaactcggaaaaggagattggagaggcattgcaaagagtttcgtgtcgac
24790100
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AGI:
At5g61620.1
Description:
myb family transcription factor. similar to myb family transcription factor [Arabidopsis thaliana] (TAIR:AT5G47390.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN76720.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO62318.1); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878); contains InterPro domain SANT, DNA-binding; (InterPro:IPR001005); contains InterPro domain Homeodomain-like (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding (InterPro:IPR014778); contains InterPro domain Myb-like DNA-binding region, SHAQKYF class (InterPro:IPR006447)
Range:
from: 24789609
to: 24790733
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.