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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<-----
<---------
ICU4
----------->
GT1
<---------
AHL20(2)
<------
MYB46(1)
--------->
ATHB12
<--------
P
<---------
ANAC58
<------
<------
MYB83
<---------
ANAC58
<------
<-------
TEIL
<------
MYB46(1)
--------->
ICU4
<-----------------
AG
<---------
MYB46(3)
<---------
ANAC46
--------->
CCA1(2)
<---------
AtMYB61
--------->
ALFIN1
<----------
DOF2
<---------
YAB1
<-----------
RAV1(1)
--------->
REM1(2)
--------->
ATHB12
<-----------
GT1
----------->
GT1
<------
MYB83
--------->
ALFIN1
<------
tcttgatttcttttttgatatacgtttttggttatttttgtgtttgtttgaattgtgaaactgttggtagggttttaagcgtgtggagtatttattgcgt
24653900
<---------
ARR14(2)
--------->
ARR14(2)
--------->
ZAT14
<---------
ARR11(3)
--------->
REM1(2)
--------->
AHL20(2)
<---------
ZAT14
==================
HOX2a_HOX2a
--------->
ARR11(3)
-----
DOF2
------>
ZmHOX2a(1)
--------->
AHL20(1)
------>
ZmHOX2a(2)
---
ANAC58
<------
MYB46(1)
<---------
AHL20(2)
<------
ZmHOX2a(2)
----------->
GT1
---
ANAC58
--------->
MYB59
--------->
YAB1
---------->
DOF2
<---------
YAB1
---
ANAC55(2)
<------
MYB83
<------
ZmHOX2a(2)
----------------->
AGL3
<-----------
GT1
tactgtgtagaaattaggtcattgtccttcaatctcgatcagaagtcaaattttttatctaaaaaaagatcggagtttttttcattgttttgtaatacaa
24654000
<------
ZmHOX2a(2)
--------->
MYB52(1)
--------->
ANAC55(2)
<---------
YAB1
<---------
ANAC58
--------->
ANAC55(2)
<---------
ANAC58
<---------
TOE1(3)
<---------
WRKY38(1)
<---------
AHL20(2)
--------->
YAB1
--------->
MYB59
--------->
YAB1
--------->
AHL20(2)
<---------
YAB1
<---------
TOE2(3)
<---------
YAB1
<---
<---------
AHL20(2)
--------->
ICU4
<---------
ANAC46
<------------
CBF
<-----
<---------
WOX13(1)
--------->
YAB1
---------->
ID1
<---------
YAB1
<------
ZmHOX2a(1)
------
gtgattaattttcgtaacggatcatgatcaaaattcaattttgtcgtttaggtattaatgtcattgatgatcaacgaggaaatatacacatatttgatca
24654100
<-
-----
-----
<----
<--------
<---------
bZIP60(1)
--------->
ARR11(3)
--------->
bZIP60(1)
<---------
ARR11(3)
<---------
YAB1
<-----
---------->
DOF2
<---------
GLK1(2)
<----------
DOF2
---------
------
YAB1
<----------
DOF2
<----------
DOF2
---------->
ID1
<--------
----
ICU4
------>
ZmHOX2a(1)
<---------
YAB1
<---------
ARR11(3)
---------
--->
YAB1
---------->
ID1
<------------
CBF
<--------
P
--------->
ARR11(3)
--------->
GLK1(2)
tgactcttaaagtcaacatttgtccttctttgaatgtattgagtcatctttggtagatttttgtctaaagatttgttctttatgatgtcaaattctagaa
24654200
<--
---
<----------
DOF2
------>
ZmHOX2a(2)
===============
----------->
GT1
<------
ZmHOX2a(2)
--------
YAB1
================
---->
ARR14(2)
---------->
DOF2
<---------
RVE1(1)
---->
GLK1(2)
<----------
ID1
<------------
CBF
--------->
ARR11(3)
-----
ARR14(2)
---------->
DOF2
<---------
AHL20(1)
<---------
ARR11(3)
-
HSFC1(1)
--------->
AHL20(2)
<---------
AHL20(2)
<---------
ARR14(3)
----
GLK1(2)
<---------
AHL20(2)
--------->
AHL20(2)
--------->
AGP1
---
>
HSFB2a(2)
----------->
GT1
--------->
GLK1(2)
--------->
AHL20(1)
<---------
ARR14(2)
-
HSFB2a(2)
--------->
ANAC55(2)
--------->
AHL20(2)
--------->
ARR14(3)
>
HSFC1(1)
<---------
ANAC55(2)
--------->
GLK1(2)
--------->
ARR14(2)
tctgattagtgaataggtaataaaagacaaagaatcagtttagaatccattaaattgttctaatatgctctgttcataaacgtcgagatctttttggtaa
24654300
--------->
ARR11(3)
------>
ZmHOX2a(1)
--------->
AHL20(1)
<-----------------
AGL1
--------->
YAB1
-------
ZAT18
<---------
WRKY38(1)
------>
ZAT18
<---------
WRKY12
=================
HOX2a_HOX2a
<-----------
HVH21
<---
=================
HOX2a_HOX2a
<---------
ZAT14
--------->
GLK1(1)
----
------>
ZAT14
------------>
CBF
<---------
ARR14(2)
<---------
ARR11(3)
--------
tgcactctgtttcctctacaggtttattttgtca
atggctgaagagaatacttcagaggtcaaagatattgagaattcttccgatacaaaccctccgaag
24654400
<------
ZmHOX2a(1)
<---------
TOE2(3)
---------->
DOF2
<---------
ANAC55(2)
<---------
ANAC58
--------->
ARR11(3)
<---------
ANAC46
<--------
P
<------
ZmHOX2a(2)
<---------
ANAC58
<---------
AtMYB61
<---------
ANAC55(1)
--------->
ALFIN1
------
ARR11(3)
<---------------
AtSPL3
<---------
At4g35610
----->
ARR11(3)
--------------->
AtSPL3
<---------
ARR11(3)
--------->
ANAC58
->
LBD16
<----------
DOF2
--------->
REM1(2)
--------->
ARR11(3)
--------->
ANAC58
<------
atgtctgaagaaggctctttggaaacagtacgtgtaaaggatgtggaaaatgtggaagatgttatagctgtggtagccaaggatcaagaagagattatac
24654500
---
<---
<---
<----
<-------
TEIL
<---------
ANAC46
------>
NtERF2
<---------
TOE1(2)
<---------
ANAC58
--------->
ANAC46
<---------
TOE2(2)
<---------
ANAC58
--------->
ATHB12
--------->
ANAC58
<-----------
RAV1(2)
--------->
TOE1(2)
<---------
YAB1
--------->
ANAC58
--------->
LBD16
<---------
DOF5.7(2)
--------->
ICU4
<----------
DOF2
---------->
DOF2
--------->
DOF5.7(2)
-----
GT1
--------->
ALFIN1
<---------
ANAC55(2)
<---------
MYB52(1)
cagagattattgaagtgcctaagcctcaaggtgggactttgagacgccattcgactggaacgataagtaaaccgcaggttcagtcccgttatcgtgggaa
24654600
--------->
HSFB2a(1)
<---------
HSFB2a(1)
<---------
PCF2
--------->
ALFIN1
<---------
DEAR3(2)
<---------------------
WRI1
--------->
ALFIN1
--------->
LBD16
<---------
ANAC46
<---------
ANAC46
--------->
ALFIN1
<---------
TOE2(3)
<---------
ANAC58
<-
------>
YAB1
--------->
ATHB12
--------->
ANAC58
<---------
ANAC58
<-
------
HSFC1(2)
--------->
ICU4
--------->
ANAC58
---------->
DOF2
--------
------
HSFB2a(1)
<---------
YAB1
--------->
TOE2(2)
----------->
HVH21
---------->
DOF2
-----
KAN4(2)
--------->
YAB1
--------->
TOE1(2)
<---------
ANAC46
<---------
AtLEC2
<----
tcatcgtgtgggttcgactcatgatttatgtaaacatgggaagaaatgtgatcaagatgatgctgtgaagccgtggaagattgcaaggagaaagagtgtt
24654700
<---------
ARR14(2)
--------->
ARR14(2)
--------->
LBD16
<---------
LBD16
<---------
At4g35610
--------->
MYB52(1)
<-------
GAMYB
<---------
ANAC58
------>
MYB46(1)
<-------
TEIL
<---------
ANAC46
------>
MYB83
--------
TOE2(3)
--------->
ATHB12
<---------
ZAT14
--------->
AtMYB61
--------
TOE1(3)
--------->
ANAC58
--------->
ALFIN1
<---------
MYB59
->
ALFIN1
<---------
YAB1
--------->
ANAC58
<---------
ZAT6
<-----------
GT1
-----
REM1(1)
---------->
DOF2
<---------
HSFB2a(2)
<---------
ANAC58
<-----------
RAV1(2)
gaaggttcagttgtgatcaaagttgagacaccaagttcgacaaggaagtcattggggagtgtgagtagacagagtccaggtataaccaaaccggatagtt
24654800
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AGI:
At5g61260.1
Description:
chromosome scaffold protein-related. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G07820.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO15046.1); contains InterPro domain Calmodulin-binding, plant (InterPro:IPR012417)
Range:
from: 24654335
to: 24655825
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.