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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
--------->
ANAC58
--------->
ANAC46
--------->
ANAC58
<---------
ATHB12
<---------
LBD16
--------->
KAN4(2)
--------->
MYB52(1)
<---------
KAN4(1)
--------->
ANAC58
--------->
ANAC46
--------->
ICU4
<---------
ARR14(2)
<---------
ALFIN1
<---------
ANAC55(2)
--------->
ARR14(2)
--------->
ANAC58
--------->
ANAC55(2)
--------->
YAB1
<-----------
GT1
---
--------->
ANAC58
------->
GAMYB
<---------
YAB1
--------->
ZAT14
---
----
ZmHOX2a(1)
--------->
AtMYB61
--------->
AtMYB61
--------->
WOX13(1)
--------->
ANAC58
----
LBD16
<---------
ALFIN1
--------->
MYB46(3)
--------->
TOE2(3)
----------->
ARR10
----
------
RAV1(2)
--------->
YAB1
<xxxxxxxxxxxxxxxxxx
smallRNA(se3)
<---------
ZAT14
---------
ggagcaagagactgacaatgaccacaccacggagcataaaactcaaccaaaacgtattgattattctcaatcacatcagtgaagttacgctccttgataa
24390900
<---------
DOF5.7(2)
--------->
MYB52(1)
----------->
HVH21
--------->
DOF5.7(2)
<---------
DEAR3(2)
<---------
DEAR3(1)
--------------->
AGL15
<------
NtERF2
----------------->
AG
------>
NtERF2
----------------->
AGL1
<---------
DEAR3(1)
<-----------------
AGL1
--------->
DEAR3(1)
--------->
LBD16
--------->
ARR11(3)
<---------
ANAC46
<---------
LBD16
----------->
GT1
<---------
ATERF1(1)
--------->
GLK1(2)
====================
HOX2a_HOX2a
------>
NtERF2
--------->
ARR14(2)
<---------
ARR11(3)
--------->
LBD16
------>
ZmHOX2a(2)
------>
ZmHOX2a(2)
-
------>
TOE2(3)
<---------
DEAR3(1)
<---------
ARR14(2)
----------->
GT1
-
---->
GAMYB
<---------
LBD16
--------->
ARR14(2)
<---------
AGP1
------>
ZmHOX2a(1)
----------
----->
MYB46(3)
--------->
WOX13(1)
<---------
ARR14(2)
<---------
ARR14(2)
<-------
GAMYB
>
YAB1
<----------
DOF2
--------->
ANAC46
<------
ZmHOX2a(2)
--------->
ARR14(2)
<-----------
TGA1
<
ccacaacgtctttctcatcaatctccggcgtcggtaacggatcggaatccggattacctagatcggaaaaatctccttcttcatcgtcatcgtcgttgta
24391000
<<<<<<<<<
TBF1
<---------
DOF5.7(2)
=======================
HOX2a_HOX2a
<------
NtERF2
==
------>
ZmHOX2a(2)
------>
NtERF2
==
====================
HOX2a_HOX2a
--------->
HSFB2a(2)
-----
========================
HOX2a_HOX2a
--------->
LBD16
<----
=====================
HOX2a_HOX2a
<---------
LBD16
------>
ZmHOX2a(2)
<---------
HSFB2a(1)
<---------
ANAC46
=========
--------->
HSFB2a(1)
<---------
LBD16
=========
<------
ZmHOX2a(2)
<------
NtERF2
<------
ZmHOX2a(2)
<---------
ARR14(3)
--------->
DEAR3(1)
==========
--------->
ARR11(3)
--------->
ATERF1(1)
==========
--------->
ARR14(3)
<------
NtERF2
--------->
ARR14(3)
<---------
ARR11(3)
--------->
At4g35610
<---------
ARR14(3)
<---------
ARR14(2)
<---------
ATERF1(1)
--------->
ARR11(3)
--------->
ARR14(2)
<---------
ARR14(2)
---------->
CDC5
<---------
ARR11(3)
<---------
LBD16
<-----------
HVH21
<---------
WRKY38(1)
<---------
ARR14(2)
-------->
ARR14(2)
--------->
ARR14(2)
<------
ZmHOX2a(1)
------>
NtERF2
--------->
AGP1
-------->
MYB52(1)
<---------
ARR14(2)
<---------
TOE2(3)
<---------
At4g35610
--------->
ARR14(2)
----------->
WRI1
------>
ZmHOX2a(1)
<---------
At4g35610
<---------
WRKY12
<----------
DOF2
<-
---------
ARR14(2)
------>
ZmHOX2a(1)
--------->
ARR14(2)
<-----------
HVH21
-----------------
catatcgggatcttcttcttctcctccttcgaattcgtcaaatccagttgaggaagagagtgagtcagcgccgggaacgtcgtcttctttgagatcttcg
24391100
------>
ZmHOX2a(1)
==============================
HOX2a_HOX2a
<------
ZmHOX2a(2)
===============================
HOX2a_HOX2a
<---------
GLK1(2)
<---------
ARR11(3)
<---------
ARR14(2)
--------->
ARR14(2)
--------->
ARR11(3)
--------->
AGP1
--------->
GLK1(1)
<---------
GLK1(1)
----------->
ARR10
--------->
ZAT2
<-----------
HVH21
--------->
At4g35610
<---------
DEAR3(1)
<---------
ZAT2
<---------
DOF5.7(2)
<---------
At4g35610
<-----------
HVH21
===============
HOX2a_HOX2a
================
HOX2a_HOX2a
<---------
DEAR3(1)
<------
NtERF2
---->
HSFB2a(2)
<---------
WRKY45
--------->
MYB52(1)
<---------
MYB46(3)
-----
HSFB2a(2)
<---------
WRKY38(1)
<------
ZmHOX2a(1)
--------->
At5g28300
=====
HOX2a_HOX2a
<---------
WRKY12
<------
NtERF2
<---------
ARR14(2)
<---------
ANAC46
==================
HOX2a_HOX2a
<------
ZmHOX2a(1)
----------->
GT1
<---------
ZAT14
==================
HOX2a_HOX2a
<------
NtERF2
---------->
DOF2
--------->
LBD16
--------->
ZAT14
=====
HOX2a_HOX2a
--------->
DOF5.7(2)
--------->
RAP2.3(1)
<---------
DEAR3(1)
<---------
DEAR3(1)
-----
ZmHOX2a(1)
--------->
TOE2(3)
--------->
At4g35610
<---------
ANAC46
--------->
ZAT18
<-----
---->
WRI1
------>
ZmHOX2a(2)
<------
NtERF2
<---------
DEAR3(1)
<---------
LBD16
--------->
ALFIN1
--------
aggaagctgagatcctcatcgtcaacgtcgtcggaggaagaagcggcgaaagaaggagaaacggcggagaagatgagaagtgcggtgagtgagaagagga
24391200
--------->
ANAC55(2)
--------->
ANAC58
<xxxxxxxxxxxxxxxxxxxxxxxxxxx
smallRNA(se3)
<---------
MYB52(2)
--------->
ANAC58
--------->
ANAC46
--------->
ANAC58
----------->
GT1
--------->
ANAC46
<---------
ANAC55(2)
<---------
ARR14(2)
<-------
GAMYB
--------->
ANAC55(1)
--------->
ARR14(2)
--------->
MYB55(2)
<---------
SPL7
--------->
MYB111(2)
--------->
LBD16
<---------
MYB46(3)
--------->
MYB46(3)
--------->
ANAC58
<--------
P
--------->
ANAC58
--------->
ANAC58
<---------
ZAT2
------>
ZmHOX2a(2)
<----
--------->
ANAC46
<---------
PCF2
--------->
CCA1(2)
<----------
<---------
LBD16
----------->
HVH21
<------
ZmHOX2a(2)
--------->
HSFB2a(2)
>>>>>>>>>>
AtSR1
<---------
ANAC58
--------->
AGP1
<---------
HSFB2a(2)
-
ZmHOX2a(1)
<---------
ANAC58
--------->
ARR11(3)
------------>
CBF
<----------
DOF2
->
ALFIN1
--------->
SPL7
--------->
ALFIN1
<---------
ARR11(3)
*
TSS
<-----------
GT1
gcaaaacgcggaacgccat
tttagtgtgtgcgacctggttgttgagatctaacaagtaacaact
acgagtacaatacaagcttgtttcttttctagtaca
24391300
-------->
ATHB1
--------->
ATHB51
--------->
ATHB12
<---------
ICU4
<---------
ATHB51
<---------
AHL20(2)
--------->
ICU4
--------->
AHL20(2)
<---------
ATHB12
--------->
AHL20(1)
<---------
MYB59
<---------
AHL20(2)
<-----------
GT1
--------->
AHL20(2)
<-------
GAMYB
<------
ZmHOX2a(2)
<--------
HAHB4
<----
--------->
MYB52(2)
<------
ZmHOX2a(1)
----------->
TBP
--------->
AHL20(1)
<---------
MYB46(3)
<---------
DEAR3(1)
<---------
AHL20(2)
--------->
YAB1
<---------
AHL20(1)
--------
CBF
------>
MYB46(1)
<---------
TOE2(3)
<---------
YAB1
<---------
AHL20(2)
--------->
AHL20(2)
-----
AtSPL8
------>
MYB83
<------
NtERF2
--------->
AHL20(2)
<---------
YAB1
----------->
GT1
ttgttcgttgttaccaaatcaaacgtcgtcgttttaggatcaaattaaattattagggactataaatctataattaagtcttaaccagaaaaatatataa
24391400
------>
MYB83
--------
--------->
AHL20(2)
--------->
ARR14(3)
<---------
AHL20(2)
--------->
ARR11(3)
------>
MYB83
--------->
MYB52(1)
<-----------
GT1
--------->
GLK1(2)
------>
MYB46(1)
------>
MYB46(1)
----------->
HVH21
--------->
YAB1
<---------
ARR14(3)
-------
GT1
<---------
MYB59
<----------
DOF2
--------->
YAB1
<---------
ARR11(3)
accgaacaaattaaact
aaaccgaaccgaaatgttttctttgacacattgtaacgttctacataatcaaaacaatagaaatttgacaaaatcttgaaaag
24391500
<---------
ANAC58
<---------
ANAC58
<-------
MYC3
------->
MYC2
<---------
ARR11(3)
--
---------->
DOF2
----------->
HVH21
--------->
ARR11(3)
<-
<---------
YAB1
<-----------
HVH21
<---------
ZAT18
------->
MYC3
<------
-->
DOF2
<-----------
TGA1
<---------
LBD16
<-------
MYC2
---------->
DOF2
agtaatgaaagaagtatgtttttggtatat
ttaagcgtcagagtgagtgacaatagtgcggatgatattagcacgttgtttcttgatcacaaagtagatt
24391600
------>
ZmHOX2a(1)
--------------------->
WRI1
------->
PIF5
<-------
PIF5
--------->
ANAC58
<---------
GLK1(1)
--------->
ZAT6
--------->
ANAC58
--------->
CCA1(2)
------>
ZmHOX2a(1)
--------->
ANAC46
<-
XXXXXXXXXXXXXXXXXXXX>
MIR1886.1
--------->
bZIP60(2)
--
---->
ZmHOX2a(1)
<---------
MYB59
<---------
ALFIN1
<---------
ANAC58
--------------
AGL15
---------->
DOF2
<---------
MYB46(3)
<---------
ANAC58
---
GLK1(2)
---------->
DOF2
<---------
MYB52(1)
<<<<<<<<<
TBF1
<---------
ANAC46
cctaatgagagaaatgcgatgaaagaaagtcctaacactactccgatggtttctccacgtccttcttcttctcgtcgactctcacttgttgtgtgttcgt
24391700
<---------
ANAC58
<---------
ANAC58
<---------
ANAC46
<-----
<-----------
GT1
--------->
ARR11(3)
<----------
DOF2
<---------
ARR14(2)
--------->
ARR14(2)
------->
TEIL
--------->
GLK1(2)
---------->
DOF2
<---------
ARR14(2)
--------
At4g35610
------->
TEIL
---------->
DOF2
<------
ZmHOX2a(1)
------->
At4g35610
--------->
ARR14(2)
--------->
ALFIN1
--------->
LBD16
<---------
AtMYB61
ctgatgaaactttacttccttgtgaatctggttctacaatagatgtttttgaaggtgaaggtgaaagtgaaagcggagaaggcgaggattttggtggatt
24391800
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AGI:
At5g60640.1
Description:
ATPDIL1-4 (PDI-LIKE 1-4); thiol-disulfide exchange intermediate. similar to ATPDIL1-3 (PDI-LIKE 1-3), thiol-disulfide exchange intermediate [Arabidopsis thaliana] (TAIR:AT3G54960.1); similar to protein disulfide isomerase precursor [Oldenlandia affinis] (GB:ABS11216.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO21842.1); similar to unknown [Populus trichocarpa] (GB:ABK94380.1); contains InterPro domain Protein disulphide isomerase; (InterPro:IPR005792); contains InterPro domain Disulphide isomerase; (InterPro:IPR005788); contains InterPro domain Thioredoxin-like fold (InterPro:IPR012336); contains InterPro domain Thioredoxin
Range:
from: 24388185
to: 24391264
Orientation: Reverse
Links:
TAIR
MIPS
AGI:
At5g60650.1
Description:
unknown protein
Range:
from: 24391418
to: 24392024
Orientation: Reverse
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.