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Chromosome 1
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Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
<-----------
RAV1(2)
<------
ZmHOX2a(2)
--------->
ICU4
--------->
ARR11(3)
--------->
YAB1
<
<---------
YAB1
--------->
GLK1(2)
<-------
TEIL
--------->
At4g35610
---------
---------
TOE2(3)
---------->
DOF2
<---------
ARR11(3)
<---------
YAB1
--------->
TOE2(3)
ttaaggcattctcattatcaagaccgtcgcaattctaaagaatccaattagatcaccaggtacaatttttgataagcagagaaatgctac
ctcagaaagt
23910500
--------->
ARR14(2)
<---------
ARR11(3)
--------->
YAB1
<---------
ARR14(2)
<---------
ICU4
--------->
ARR11(3)
--------->
ICU4
---------->
DOF2
--------->
At4g35610
<---------
ATHB51
<---------
ICU4
<---------
At4g35610
<---------
ARR14(2)
<---------
YAB1
----------->
GT1
--------->
ARR14(2)
--------->
GLK1(2)
--------->
YAB1
--------->
DAG2
---------
GLK1(1)
<---------
GLK1(1)
<---------
ATHB12
---------->
DOF2
->
DOF2
<---------
GLK1(2)
--------->
GLK1(1)
--------->
WOX13(1)
<---------
ZAT6
cgatttccgctctcagattttctgatcactgggaaat
ctgaaataatgaagtagtcaatcaaaattgcaaagctagtggaaaaggagatggcaaaacatt
23910600
<---------
ARR14(2)
--------->
ARR14(2)
------->
TEIL
===========================
HOX2a_HOX2a
============================
HOX2a_HOX2a
--------->
ATERF1(2)
------>
ZmHOX2a(2)
<---------
ATERF1(2)
--------->
CCA1(2)
<---------
LBD16
<------
ZmHOX2a(2)
<---------
At5g28300
<---------
AGP1
--------->
MYB52(1)
--------->
ARR14(2)
<-----------
GT1
<---------
ARR14(3)
--------->
At4g35610
<---------
AHL20(2)
<---------
ARR14(2)
<----------
DOF2
---
--------->
AHL20(2)
--------->
AGP1
--------->
HSFC1(2)
<---------
At4g35610
<---------
AHL20(2)
--------->
ARR14(3)
<---------
ANAC58
<--
--------->
AHL20(2)
--------->
ARR11(3)
<---------
ANAC58
<----------
DOF2
<---------
At4g35610
<------
ZmHOX2a(1)
<---------
ARR11(3)
<----------
DOF2
--------->
At4g35610
--------->
At4g35610
--------->
ATHB12
----------->
ARR10
<---------
HSFC1(2)
<---------
ZAT2
---
gaaattggagatgaataaaattac
cggcaggattgggaatttcactaagatctggacctgaagaagctttgcttagcctttgagctgctctcttttgacg
23910700
<--
<----------
ID1
---
--------->
YAB1
<--
--------->
YAB1
<---------
RAP2.6(2)
--------->
AHL20(2)
--------->
ANAC58
--------->
RAP2.6(3)
<---------
AHL20(2)
--------->
ANAC58
---------->
DOF2
----
--------->
AHL20(2)
--------->
DEAR3(1)
<---------
At4g35610
--------->
ARR14(2)
------>
GLK1(2)
<------
ZmHOX2a(2)
<---------
ABI4(2)
--------->
At4g35610
<---------
ARR14(2)
---------
ARR10
<---------
ARR11(3)
--------->
DAG2
<-----------
RAV1(2)
----------------
---->
TEIL
--------->
ARR11(3)
---------->
DOF2
--------->
GLK1(2)
--------->
ARR11(3)
----
aatctcttccaa
ctacaagatcacagaaattaataacaacaaaaaagcaccgatgtaagaaactgtcttcagatgaagataaagacggccatatcggaaa
23910800
<
-
<-
--
--
---
<--
<---------
DEAR3(1)
---
--------->
SPL7
----
<---------
ZAT14
<---
--------->
ZAT14
----
--------->
ZAT6
--------->
ALFIN1
<---------
GLK1(1)
------>
ZmHOX2a(1)
------->
MYC3
--------->
GLK1(1)
--------->
TOE2(3)
<---------
O2
--------->
ANAC46
*
TSS
<---
---------
GT1
--------->
DEAR3(1)
--------->
GLK1(2)
--------->
HSFB2a(2)
<------
ZmHOX2a(1)
------>
ARR11(3)
<---------
ANAC46
--------->
LBD16
<---------
At5g28300
-
-------
ARR11(3)
<---------
ANAC58
------>
ZmHOX2a(1)
<-----------
GT1
-----
----->
RVE1(1)
<---------
ANAC58
<---------
LBD16
<----------
DOF2
<----
->
AGL1
<---------
SPL7
--------->
CCA1(2)
------>
ZmHOX2a(1)
--------->
SPL7
--------->
ALFIN1
----->
CCA1(1)
------>
NtERF2
<-------
MYC3
<---------
YAB1
<---------
GLK1(2)
--------->
MYB52(1)
<--
tatccttac
agtacggcgacctagagacgcgtggtgcgattccat
ggtatgattcctctcctcggaatttcgaacgtcgatttaacggtga
ggaaatcgc
23910900
----------->
GT1
<------
NtERF2
----------->
RAV1(1)
------>
NtERF2
---------
ETT(2)
-------->
DEAR3(1)
-----
NtERF2
------->
RAP2.3(1)
------->
ATERF1(1)
------>
LBD16
-------
ATERF1(1)
--->
NtERF2
<----------
DOF2
----->
DEAR3(1)
<-----------------
AGL3
------
DEAR3(1)
<---------
AHL20(1)
----->
ATERF1(2)
<-----------------
AGL2
------
ATERF1(2)
<---------
CCA1(2)
---------->
HVH21
--------->
ARR11(3)
----------->
GT1
---->
ATERF1(1)
<---------
ARR11(3)
----------->
GT1
----------->
HVH21
-----
LBD16
--------->
ARR11(3)
<---------
ZAT6
<-----------
GT1
-------
RAP2.3(1)
<---------
ARR11(3)
<------
ZmHOX2a(1)
<-----------
TBP
---------->
DOF2
<---
cggcgacaaaaatggaatatatctatatttgggcttataggagtgttaaataggcccatggacatatataactctctgaccttgaaagcgagcccagttt
23911000
xxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
<---------
AHL20(2)
xxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
--------->
AHL20(2)
xxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
--------->
AHL20(1)
---------->
DOF2
xxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
--------->
AHL20(2)
<---------
YAB1
xxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
----------->
GT1
--------->
YAB1
xxxxxxxxxxxxxxxxxxxx>
smallRNA(le3)
<----------
ID1
---------->
DOF2
----------->
GT1
xxxxxxxxxxxxxxxxxxxxx>
smallRNA(si3)
---------->
DOF2
--------->
AHL20(2)
<---------
YAB1
<---------
ETT(1)
--------
GT1
------------------------>
ANAC81
<------
ZmHOX2a(1)
--------->
ARR14(2)
ttcaatttcaaaaagaaaaaaaaaattgaataaaagttgaaaacaggatgataaaagaaaaccagtttccgacaaaaaaaaaaaaaaaaaaaaaaaacca
23911100
---------->
DOF2
--------->
AHL20(2)
<---------
AHL20(2)
<---------
MYB52(1)
<---------------------
WRI1
--------->
ARR11(3)
--------->
AHL20(2)
<------
ZmHOX2a(1)
<---------
<---------
ARR11(3)
--------->
KAN4(1)
<---------
STY1(2)
--------->
DAG2
---------->
DOF2
<---------
KAN4(2)
--------->
MYB46(2)
---------->
DOF2
gtttatgcaattgcaaagacatttaaaagaaaaaaaaacgagaatgttcaaaaaaatcgttaggcgatagctaggagttcgattctaaaaaagttaccaa
23911200
<------
MYB46(1)
<------
MYB46(1)
<------
MYB83
<--------
<--------
P
<--------
P
---------
<---------
MYB46(3)
--------->
ETT(2)
--------->
MYB55(2)
------>
ZmHOX2a(2)
<---------
DEAR3(2)
--------->
ATHB12
<---------
RAP2.6(2)
-------->
HAHB4
<---------
ANAC46
<---------
ICU4
--------->
ICU4
<---------
DEAR3(1)
--------->
YAB1
<---------
YAB1
<---------
DREB2C(2)
---------->
DOF2
<---------
YAB1
--------->
ICU4
------------>
AtMYB77
<---------
YAB1
<---------
YAB1
<----------
DOF2
--------->
TOE2(3)
--
GT1
<-------
GAMYB
<------
MYB83
<---------
ICU4
--------------->
AtSPL8
--------->
YAB1
agtttggcggttggaaacggttggaagttatcaaagcttgaatcatcattttgatttctaagtactttaaacaatgttcagtcttaatgatcgacatctt
23911300
--------->
DAG2
<---------
ANAC55(2)
--------->
ANAC55(2)
=
<-----------
HVH21
<---------
AHL20(2)
<-----------
RAV1(1)
<
-
ARR11(3)
---------->
DOF2
----------->
GT1
<---------
YAB1
-
>
ARR11(3)
<---------
YAB1
<---------
MYB52(1)
<---------
GLK1(2)
<--
ctaatatgtcacatgataaagtgtgaaccatacccgtttgatgaagagttatataaacatgttttatagattatgttggcaaaaaaaaaaaaaaaacgtt
23911400
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AGI:
At5g59210.1
Description:
myosin heavy chain-related. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G32240.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO21574.1)
Range:
from: 23907832
to: 23910891
Orientation: Reverse
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.