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Chromosome 1
Chromosome 2
Chromosome 3
Chromosome 4
Chromosome 5
Position
Exon region
Intron region
UTR region
AGI
% Restriction to highly conserved TF binding sites (0-100)
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1 10 20 30 40 50 60 70 80 90 100
--------->
ANAC58
--------->
ANAC46
--------->
ANAC58
--------->
ANAC58
--------->
ANAC46
<---------
GLK1(2)
<---------
ALFIN1
--------->
LBD16
<---------
ALFIN1
--------->
HSFB2a(2)
-------
GT1
<---------
HSFB2a(2)
--------->
YAB1
<----
-->
YAB1
<-----------
GT1
XXXXXXXXXXXXXXXXXXXX>
MIR2939
--------
-->
AHL20(2)
<---------
CCA1(2)
<---------
LBD16
--------->
ANAC58
--------->
YAB1
--
YAB1
<------
ZmHOX2a(1)
------->
TEIL
--------->
GLK1(2)
--------->
WOX13(1)
acatcccacaccatcttcaggactccatctctccctatgtaacttctccagaat
ctaaaacacacaaaaataatccattagcatctatcaaaaatcaaag
22318500
--------->
ANAC46
<---------
ALFIN1
---------->
DOF2
--------->
ANAC58
--------->
CCA1(2)
--------->
LBD16
<----
<---------
ARR11(3)
<-----------
GT1
<---------
LBD16
<-----------
GT1
-----
-----
At4g35610
<---------
ALFIN1
<---------
DAG2
--------->
ANAC58
>>>>>
-->
DOF2
<-------
TEIL
--------->
ANAC46
<----------
DOF2
---------->
DOF2
--------
ctgatcaagatacaaagctacacacacagcaataaactctatcgaaaaatcgaaactttac
cggaataacaaaagccagagttttgccagacccagttct
22318600
--------->
ANAC46
<---------------
AGL15
----------------->
AGL3
<-----------
ARR10
--------->
ARR11(3)
<---------
ARR11(3)
--------->
RVE1(1)
<------
ZmHOX2a(1)
--------->
At4g35610
--------------->
AGL15
<-----------
HVH21
------
-----
HSFB2a(2)
==================================================================================
---->
HSFB2a(2)
----------------->
AGL2
--------->
WOX13(1)
<--------
>>
ZML2
--------->
YAB1
---------->
DOF2
<---------
ALFIN1
--------->
YAB1
<----------
DOF2
->
AGP1
<---------
GLK1(2)
--------->
DAG2
--------->
At4g35610
------->
TEIL
------>
ZmHOX2a(1)
agcagcaccaagaatatctcttccacataaagcatgaggaatagcagcactctgaacatcagtcatatcaacgtatttcgcatctttcaatcctcttttc
22318700
------
<-----
<-----
------
------
<------
============
------>
ZmHOX2a(2)
============
------>
NtERF2
=============
---------->
ID1
<------
ZmHOX2a(2)
--------->
MYB52(1)
<-----------
GT1
=============
<---------------
AGL15
<---------
MYB52(1)
--------->
ARR11(3)
--------------->
AGL15
<---------
RAP2.6(3)
<---------
ARR11(3)
----------------->
AG
<---------
HSFC1(2)
<---------
ANAC58
--------->
ARR14(2)
<-----------------
AG
--------->
HSFC1(2)
<---------
ANAC58
<---------
ARR14(2)
<-----------------
AGL1
----------->
RAV1(2)
<---------
ANAC46
<----------
DOF2
<--
----------------->
AGL1
--------->
At4g35610
<------
NtERF2
<---------
HSFB2a(1)
---->
ID1
--------->
ANAC55(2)
<---------
ALFIN1
------>
NtERF2
--------------------->
WRI1
====================
MADS_MADS
<---------
ALFIN1
--------->
ABI4(2)
--------->
HSFB2a(1)
--
DOF2
--------->
ANAC46
------>
ZmHOX2a(1)
--------->
MYB52(1)
<---------
RAP2.6(3)
<------
gttttatccgatataggtaactgagcaaacttcctcacacctgcataccgagagaaaacggtgccgtttttgccgtcttcggactttccgatcttcgaat
22318800
--------->
ANAC58
--------->
ANAC58
<------
ZmHOX2a(1)
--->
ARR14(2)
----
ARR14(2)
>>>>>>>>>
GATA-4
----
ARR11(1)
>>>>>>>>>
GATA-2
--------->
ARR14(2)
--->
GLK1(2)
---------->
DOF2
<---------
ARR14(2)
<---------
ARR11(3)
->
TEIL
<------
ZmHOX2a(1)
<---------
LBD16
--------->
ARR11(3)
---
CCA1(2)
--------->
ANAC46
<---------
ARR14(2)
<---------
At4g35610
===============
HOX2a_HOX2a
--------->
ARR14(2)
<---------
ALFIN1
=========
HOX2a_HOX2a
>>>>>>>>>
GATA-3
<---------
MYB52(1)
<-----------
RAV1(2)
=========
HOX2a_HOX2a
>>>>>>>>>
GATA-1
--------->
LBD16
--------->
MYB46(3)
===============
HOX2a_HOX2a
<---------
ARR14(2)
<------
ZmHOX2a(2)
--------
DOF2
--------->
YAB1
------>
ZmHOX2a(1)
--------->
ARR14(2)
<---------
AHL20(2)
---
ARR14(1)
<---------
ATHB12
==============================
HOX2a_HOX2a
--------->
AHL20(2)
ctttaggaagaggacgcaatgaaagtggattgaatcctgaatccggtttctgtgattcgatccactgcttcagaagatttatttcttcgacttcgttgag
22318900
--------->
At4g35610
<---------
At4g35610
---------->
DOF2
--------->
CCA1(2)
--------->
ARR14(2)
<---------
ARR14(2)
--------->
LBD16
--------------->
AGL15
<---------------
AGL15
<-----------------
AGL3
----------------->
AGL2
<---------
ICU4
----------------->
AGL1
------>
ZmHOX2a(1)
<-----------------
AG
--------->
TOE2(3)
<-----------------
AGL1
--------->
At4g35610
----------------->
AGL3
<-----------
ARR10
--------->
ANAC46
<---------
ARR11(3)
<---------
ARR14(2)
<---------
ICU4
<---------
At4g35610
------->
TEIL
<-----------
GT1
--------->
ANAC58
--------->
ARR11(3)
--------->
GLK1(2)
<---------
ICU4
--------->
ANAC58
--------->
ARR11(1)
--------->
ARR14(2)
<---------
MYB52(1)
<---------
At5g28300
--------->
At4g35610
acgaatctgcttcctcattcccttagtcttcttaatttttaccat
cttgacacaaacacgaagttagagctccagatatggaaagcttacgacttgagag
22319000
<------------
CBF
<---------
WOX13(1)
------------>
CBF
-----
--------->
CCA1(2)
<---------
At4g35610
-----
--------->
At4g35610
<---------
TOE1(3)
<---------
ARR11(3)
<--------
---------->
DOF2
<---------
TOE1(3)
<-------
TEIL
<---------
REM1(1)
<---------
TOE2(3)
---------->
DOF2
<---------
TOE2(3)
--------->
CCA1(2)
--------->
At4g35610
<---------
TOE1(3)
<---------
GLK1(2)
---------->
DOF2
<---------
TOE2(3)
--------->
ARR11(3)
----------->
GT1
<-
gctagaatttgcaaaagagcagacaaaagttagggttttaagatttgatagatacacaagaagatgttgaagcagccaattgaagggtttaacgatgagt
22319100
---------->
DOF2
<-------
TEIL
--------->
CCA1(2)
--------->
ARR14(2)
<---------
ARR14(2)
<------
ZmHOX2a(1)
<---------
TOE2(3)
--------------->
AGL15
--------->
YAB1
--------->
AHL20(2)
------------>
CBF
---------->
DOF2
<----------
DOF2
----------------->
AGL1
------>
TGA1
====================================
MADS_MADS
---------->
DOF2
------>
HVH21
<-----------
GT1
<-----------------
AGL1
--------->
YAB1
---------->
ID1
-
YAB1
<---------
AHL20(2)
<-----------------
AG
<---------
ATHB12
<-----------
GT1
--------
bZIP60(2)
<---------------
AGL15
<---------
ATHB12
------------>
CBF
<---------
AHL20(2)
<-----
gacgatgctttttttaattaccaaaaaaactaatctaggcccaataaggatacacaaaggcccaataacaaagcattttttttttcgcttccctcgtcta
22319200
<---------
GLK1(2)
<---------
YAB1
------>
ZmHOX2a(2)
---
--------->
GLK1(1)
<------
<---------
GLK1(1)
--------->
ZAT14
<---------
ARR14(2)
--------->
ZAT18
<---------
ARR11(3)
<---------
ZAT14
--------->
ARR11(3)
*
TSS
<---------
ANAC58
<---------
AGP1
<---------
HSFB2a(2)
--------->
AHL20(2)
-------
--------->
ARR14(2)
<---------
ARR14(2)
--------->
TOE1(2)
<---------
ANAC46
<---------
CCA1(2)
--------->
ARR14(2)
<-----------
RAV1(1)
<---------
AHL20(2)
<--------
<---------
LBD16
--------->
HSFB2a(2)
<----------
DOF2
<-------
TEIL
<---------
ANAC58
----
CCA1(2)
<---------
At4g35610
---------->
ID1
<---------
ZAT18
--------->
AHL20(2)
---------
tcttctctggatctcttctgattctc
gaatccctatttgtcttcgtcttcttttgttgtgaacttgcgatacatatatatatagatgcgagtacaccgga
22319300
<------
<-------
<---------
ICU4
--------->
YAB1
------>
ZmHOX2a(1)
------>
ZmHOX2a(2)
<---------
YAB1
======================
HOX2a_HOX2a
<------
ZmHOX2a(2)
--------->
YAB1
-------->
GT1
=======================
HOX2a_HOX2a
---
ZAT14
--------->
ARR11(3)
<---------
ICU4
-->
ZAT14
----------->
GT1
--------->
ANAC58
--------->
ICU4
-
LBD16
--------->
ARR11(3)
--------->
ANAC58
<---------
YAB1
>
ANAC46
--------->
ATHB12
<---------
HSFB2a(2)
<---------
ARR11(3)
<-----------
TGA1
ctgtgaaattttggaacgaattgatttgatttgaat
atggcaatcgcgaagaaattggaaaatgagatctcacgctcttctccttcgtcatcatcatcat
22319400
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AGI:
At5g54910.1
Description:
DEAD/DEAH box helicase, putative. Identical to Probable DEAD-box ATP-dependent RNA helicase 32 (RH32) [Arabidopsis Thaliana] (GB:Q9FFT9); similar to DEAD/DEAH box helicase, putative [Arabidopsis thaliana] (TAIR:AT5G65900.1); similar to predicted protein [Physcomitrella patens subsp. patens] (GB:EDQ80934.1); similar to DEAD-box ATP-dependent RNA helicase 32 (GB:Q0D622); similar to unnamed protein product [Vitis vinifera] (GB:CAO38967.1); contains InterPro domain RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014); contains InterPro domain Helicase, superfamily 1 and 2, ATP-binding (InterPro:IPR014021); contains InterPro domain DEAD-like
Range:
from: 22315783
to: 22318945
Orientation: Reverse
Links:
TAIR
MIPS
AGI:
At5g54920.1
Description:
similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G26990.1); similar to hypothetical protein [Vitis vinifera] (GB:CAN82076.1); contains InterPro domain Like-Sm ribonucleoprotein-related, core (InterPro:IPR010920)
Range:
from: 22319227
to: 22323021
Orientation: Forward
Links:
TAIR
MIPS
Please cite the corresponding
publications
when using AthaMap.